Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-26 18:46:19 (21624): Detected: vboxwrapper 26206
2025-04-26 18:46:19 (21624): Detected: BOINC client v8.0.2
2025-04-26 18:46:19 (21624): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2025-04-26 18:46:20 (21624): Successfully copied 'init_data.xml' to the shared directory.
2025-04-26 18:46:20 (21624): Create VM. (boinc_56bb84b6b1cee265, slot#2)
2025-04-26 18:46:21 (21624): Setting Memory Size for VM. (4600MB)
2025-04-26 18:46:21 (21624): Setting CPU Count for VM. (6)
2025-04-26 18:46:21 (21624): Setting Chipset Options for VM.
2025-04-26 18:46:21 (21624): Setting Graphics Controller Options for VM.
2025-04-26 18:46:22 (21624): Setting Boot Options for VM.
2025-04-26 18:46:22 (21624): Setting Network Configuration for NAT.
2025-04-26 18:46:22 (21624): Enabling VM Network Access.
2025-04-26 18:46:22 (21624): Disabling USB Support for VM.
2025-04-26 18:46:23 (21624): Disabling COM Port Support for VM.
2025-04-26 18:46:23 (21624): Disabling LPT Port Support for VM.
2025-04-26 18:46:23 (21624): Disabling Audio Support for VM.
2025-04-26 18:46:23 (21624): Disabling Clipboard Support for VM.
2025-04-26 18:46:24 (21624): Disabling Drag and Drop Support for VM.
2025-04-26 18:46:24 (21624): Adding storage controller(s) to VM.
2025-04-26 18:46:24 (21624): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-26 18:46:27 (21624): Adding VirtualBox Guest Additions to VM.
2025-04-26 18:46:27 (21624): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-26 18:46:27 (21624): forwarding host port 49457 to guest port 80
2025-04-26 18:46:28 (21624): Enabling remote desktop for VM.
2025-04-26 18:46:28 (21624): Required extension pack not installed, remote desktop not enabled.
2025-04-26 18:46:28 (21624): Enabling shared directory for VM.
2025-04-26 18:46:28 (21624): Starting VM using VBoxManage interface. (boinc_56bb84b6b1cee265, slot#2)
2025-04-26 18:46:34 (21624): Successfully started VM. (PID = '16420')
2025-04-26 18:46:34 (21624): Reporting VM Process ID to BOINC.
2025-04-26 18:46:34 (21624): Guest Log: BIOS: VirtualBox 7.0.18
2025-04-26 18:46:34 (21624): Guest Log: CPUID EDX: 0x178bfbff
2025-04-26 18:46:34 (21624): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-26 18:46:34 (21624): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-26 18:46:34 (21624): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-26 18:46:34 (21624): Detected: Web Application Enabled (http://localhost:49457)
2025-04-26 18:46:34 (21624): Preference change detected
2025-04-26 18:46:34 (21624): Setting CPU throttle for VM. (100%)
2025-04-26 18:46:34 (21624): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-26 18:46:36 (21624): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-26 18:46:36 (21624): Guest Log: BIOS: Booting from Hard Disk...
2025-04-26 18:46:40 (21624): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-26 18:46:40 (21624): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-26 18:46:40 (21624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-26 18:46:46 (21624): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-26 18:46:46 (21624): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-26 18:46:52 (21624): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000199 main     Log opened 2025-04-26T18:46:50.910954000Z
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000290 main     OS Product: Linux
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000320 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000345 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000368 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000368 main     Process ID: 1330
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.000369 main     Package type: LINUX_64BITS_GENERIC
2025-04-26 18:46:52 (21624): Guest Log: 00:00:00.001568 main     5.2.32 r132073 started. Verbose level = 0
2025-04-26 18:46:52 (21624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-26 18:46:52 (21624): Guest Log: [INFO] Mounting shared directory
2025-04-26 18:46:52 (21624): Guest Log: [INFO] Checking for init_data.xml
2025-04-26 18:47:02 (21624): Guest Log: 00:00:10.006431 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 163 273 000ns (GuestNow=1 745 686 021 750 354 000 ns GuestLast=1 745 693 210 913 627 000 ns fSetTimeLastLoop=true )
2025-04-26 18:47:03 (21624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-26 18:47:03 (21624): Guest Log: [INFO] Detected branch: prod
2025-04-26 18:47:03 (21624): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-26 18:47:03 (21624): Guest Log: Copying input files
2025-04-26 18:47:05 (21624): Guest Log: Copied input files into RunAtlas.
2025-04-26 18:47:05 (21624): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-26 18:47:05 (21624): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-26 18:47:05 (21624): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-26 18:47:05 (21624): Guest Log: Further information can be found at the LHC@home message board.
2025-04-26 18:47:26 (21624): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-26 18:47:26 (21624): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-26 18:47:26 (21624): Guest Log: 2.6.3.0 1627 0 32168 145309 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-26 18:47:28 (21624): Guest Log: copied the webapp to /var/www
2025-04-26 18:47:28 (21624): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-26 18:47:28 (21624): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-26 18:47:28 (21624): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-26 18:47:28 (21624): Guest Log:  *** Starting ATLAS job. (PandaID=6617361338 taskID=44292257) ***
2025-04-26 19:07:24 (21624): VM state change detected. (old = 'running', new = 'paused')
2025-04-26 20:07:55 (21624): VM state change detected. (old = 'paused', new = 'running')
2025-04-26 20:08:03 (21624): Guest Log: 00:20:40.634688 timesync vgsvcTimeSyncWorker: Radical host time change: 3 641 366 000 000ns (HostNow=1 745 690 883 743 000 000 ns HostLast=1 745 687 242 377 000 000 ns)
2025-04-26 20:08:14 (21624): Guest Log: 00:20:50.635193 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 641 365 362 000ns (GuestNow=1 745 690 893 743 614 000 ns GuestLast=1 745 687 252 378 252 000 ns fSetTimeLastLoop=true )
2025-04-26 21:14:07 (21624): Guest Log:  *** Job finished ***
2025-04-26 21:14:07 (21624): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:13:50,198 | INFO     | [data] queue_monitor thread has finished
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:13:56,893 | INFO     | job.realtimelogging is not enabled
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:13:57,908 | INFO     | [payload] run_realtimelog thread has finished
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:13:59,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775486928704)>', '<ExcThread(monitor, started 139774509692672)>']
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:00,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:00,245 | INFO     | [monitor] control thread has ended
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,415 | INFO     | all workflow threads have been joined
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,416 | INFO     | end of generic workflow (traces error code: 0)
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,416 | INFO     | traces error code: 0
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,485 [wrapper] ==== pilot stdout END ====
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,491 [wrapper] ==== wrapper stdout RESUME ====
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,496 [wrapper] pilotpid: 5949
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,501 [wrapper] Pilot exit status: 0
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,693 [wrapper] pandaids: 6617361338
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,732 [wrapper] cleanup supervisor_pilot  1020 5950
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,737 [wrapper] Test setup, not cleaning
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,743 [wrapper] apfmon messages muted
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,748 [wrapper] ==== wrapper stdout END ====
2025-04-26 21:14:07 (21624): Guest Log: 2025-04-26 19:14:04,753 [wrapper] ==== wrapper stderr END ====
2025-04-26 21:14:07 (21624): Guest Log:  *** Error codes and diagnostics ***
2025-04-26 21:14:07 (21624): Guest Log:     "exeErrorCode": 0,
2025-04-26 21:14:07 (21624): Guest Log:     "exeErrorDiag": "",
2025-04-26 21:14:07 (21624): Guest Log:     "pilotErrorCode": 0,
2025-04-26 21:14:07 (21624): Guest Log:     "pilotErrorDiag": "",
2025-04-26 21:14:07 (21624): Guest Log:  *** Listing of results directory ***
2025-04-26 21:14:07 (21624): Guest Log: total 202972
2025-04-26 21:14:07 (21624): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 07:55 pilot3.tar.gz
2025-04-26 21:14:07 (21624): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 08:15 queuedata.json
2025-04-26 21:14:07 (21624): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 08:16 runpilot2-wrapper.sh
2025-04-26 21:14:07 (21624): Guest Log: -rwxr-xr-x. 1 atlas atlas      9156 Apr 26 16:47 init_data.xml
2025-04-26 21:14:07 (21624): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 Apr 26 16:47 input.tar.gz
2025-04-26 21:14:07 (21624): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 26 16:47 start_atlas.sh
2025-04-26 21:14:07 (21624): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 26 16:47 EVNT.44292255._000287.pool.root.1 -> /data/./ATLAS.root_0
2025-04-26 21:14:07 (21624): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr 26 16:47 pandaJob.out
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas       424 Apr 26 16:47 setup.sh.local
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas    993216 Apr 26 16:48 agis_schedconf.cvmfs.json
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 26 16:48 agis_ddmendpoints.agis.ALL.json
2025-04-26 21:14:07 (21624): Guest Log: drwx------. 4 atlas atlas      4096 Apr 26 16:48 pilot3
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas 202632079 Apr 26 19:13 HITS.44292257._007134.pool.root.1
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas      1030 Apr 26 19:13 memory_monitor_summary.json
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas    286046 Apr 26 19:13 log.44292257._007134.job.log.tgz.1
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas        97 Apr 26 19:13 pilot_heartbeat.json
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas      7720 Apr 26 19:13 heartbeat.json
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 26 19:14 pilotlog.txt
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas    436844 Apr 26 19:14 log.44292257._007134.job.log.1
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas       357 Apr 26 19:14 output.list
2025-04-26 21:14:07 (21624): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 26 19:14 runtime_log
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas    737280 Apr 26 19:14 result.tar.gz
2025-04-26 21:14:07 (21624): Guest Log: -rw-r--r--. 1 atlas atlas     10923 Apr 26 19:14 runtime_log.err
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas       647 Apr 26 19:14 fSwLDm8spS7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmB9pLDmgdRx5n.diag
2025-04-26 21:14:07 (21624): Guest Log: Looking for outputfile HITS.44292257._007134.pool.root.1
2025-04-26 21:14:07 (21624): Guest Log: HITS file was successfully produced
2025-04-26 21:14:07 (21624): Guest Log: -rw-------. 1 atlas atlas 202632079 Apr 26 19:13 /home/atlas/RunAtlas/HITS.44292257._007134.pool.root.1
2025-04-26 21:14:08 (21624): Guest Log: Successfully finished the ATLAS job!
2025-04-26 21:14:08 (21624): Guest Log: Copying the results back to the shared directory!
2025-04-26 21:14:09 (21624): Guest Log:  *** Contents of shared directory: ***
2025-04-26 21:14:09 (21624): Guest Log: total 419300
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root 225445774 Apr 26 16:46 ATLAS.root_0
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root 202632079 Apr 26 19:14 HITS.pool.root.1
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root      9156 Apr 26 16:46 init_data.xml
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root    508875 Apr 26 15:56 input.tar.gz
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root    737280 Apr 26 19:14 result.tar.gz
2025-04-26 21:14:09 (21624): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 26 15:56 start_atlas.sh
2025-04-26 21:14:09 (21624): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-26 21:14:09 (21624): VM Completion File Detected.
2025-04-26 21:14:09 (21624): Powering off VM.
2025-04-26 21:14:10 (21624): Successfully stopped VM.
2025-04-26 21:14:10 (21624): Deregistering VM. (boinc_56bb84b6b1cee265, slot#2)
2025-04-26 21:14:10 (21624): Removing network bandwidth throttle group from VM.
2025-04-26 21:14:10 (21624): Removing VM from VirtualBox.
21:14:15 (21624): called boinc_finish(0)

</stderr_txt>
]]>

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