Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-26 11:41:21 (788066): Detected: vboxwrapper 26206
2025-04-26 11:41:21 (788066): Detected: BOINC client v8.2.1
2025-04-26 11:41:21 (788066): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-04-26 11:41:22 (788066): Successfully copied 'init_data.xml' to the shared directory.
2025-04-26 11:41:22 (788066): Create VM. (boinc_d2f59f97e5a320c9, slot#3)
2025-04-26 11:41:23 (788066): Setting Memory Size for VM. (4800MB)
2025-04-26 11:41:23 (788066): Setting CPU Count for VM. (8)
2025-04-26 11:41:23 (788066): Setting Chipset Options for VM.
2025-04-26 11:41:24 (788066): Setting Graphics Controller Options for VM.
2025-04-26 11:41:24 (788066): Setting Boot Options for VM.
2025-04-26 11:41:24 (788066): Setting Network Configuration for NAT.
2025-04-26 11:41:24 (788066): Enabling VM Network Access.
2025-04-26 11:41:25 (788066): Disabling USB Support for VM.
2025-04-26 11:41:25 (788066): Disabling COM Port Support for VM.
2025-04-26 11:41:25 (788066): Disabling LPT Port Support for VM.
2025-04-26 11:41:26 (788066): Disabling Audio Support for VM.
2025-04-26 11:41:26 (788066): Disabling Clipboard Support for VM.
2025-04-26 11:41:26 (788066): Disabling Drag and Drop Support for VM.
2025-04-26 11:41:26 (788066): Adding storage controller(s) to VM.
2025-04-26 11:41:26 (788066): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-26 11:41:28 (788066): Adding VirtualBox Guest Additions to VM.
2025-04-26 11:41:29 (788066): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-26 11:41:29 (788066): forwarding host port 49225 to guest port 80
2025-04-26 11:41:29 (788066): Enabling remote desktop for VM.
2025-04-26 11:41:29 (788066): Required extension pack not installed, remote desktop not enabled.
2025-04-26 11:41:29 (788066): Enabling shared directory for VM.
2025-04-26 11:41:30 (788066): Starting VM using VBoxManage interface. (boinc_d2f59f97e5a320c9, slot#3)
2025-04-26 11:41:32 (788066): Successfully started VM. (PID = '788670')
2025-04-26 11:41:32 (788066): Reporting VM Process ID to BOINC.
2025-04-26 11:41:32 (788066): Guest Log: BIOS: VirtualBox 7.1.8
2025-04-26 11:41:32 (788066): Guest Log: CPUID EDX: 0x178bfbff
2025-04-26 11:41:32 (788066): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-26 11:41:32 (788066): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-26 11:41:32 (788066): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-26 11:41:32 (788066): Detected: Web Application Enabled (http://localhost:49225)
2025-04-26 11:41:32 (788066): Preference change detected
2025-04-26 11:41:32 (788066): Setting CPU throttle for VM. (100%)
2025-04-26 11:41:32 (788066): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-26 11:41:34 (788066): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-26 11:41:34 (788066): Guest Log: BIOS: Booting from Hard Disk...
2025-04-26 11:41:37 (788066): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-26 11:41:37 (788066): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-26 11:41:37 (788066): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-26 11:41:50 (788066): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-26 11:41:50 (788066): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-26 11:42:16 (788066): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000190 main     Log opened 2025-04-26T09:42:15.097791000Z
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000308 main     OS Product: Linux
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000340 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000365 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000390 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000391 main     Process ID: 1400
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.000392 main     Package type: LINUX_64BITS_GENERIC
2025-04-26 11:42:16 (788066): Guest Log: 00:00:00.004118 main     5.2.32 r132073 started. Verbose level = 0
2025-04-26 11:42:17 (788066): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-26 11:42:17 (788066): Guest Log: [INFO] Mounting shared directory
2025-04-26 11:42:17 (788066): Guest Log: [INFO] Checking for init_data.xml
2025-04-26 11:42:26 (788066): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-26 11:42:26 (788066): Guest Log: [INFO] Detected branch: prod
2025-04-26 11:42:27 (788066): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-26 11:42:27 (788066): Guest Log: Copying input files
2025-04-26 11:42:28 (788066): Guest Log: Copied input files into RunAtlas.
2025-04-26 11:42:28 (788066): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-26 11:42:28 (788066): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-26 11:42:28 (788066): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-26 11:42:28 (788066): Guest Log: Further information can be found at the LHC@home message board.
2025-04-26 11:42:38 (788066): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-26 11:42:39 (788066): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-26 11:42:39 (788066): Guest Log: 2.6.3.0 1677 0 30172 145298 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-26 11:42:42 (788066): Guest Log: copied the webapp to /var/www
2025-04-26 11:42:42 (788066): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-26 11:42:42 (788066): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-26 11:42:42 (788066): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-26 11:42:42 (788066): Guest Log:  *** Starting ATLAS job. (PandaID=6617270856 taskID=44292257) ***
2025-04-26 13:20:33 (788066): Status Report: Elapsed Time: '6000.000000'
2025-04-26 13:20:33 (788066): Status Report: CPU Time: '31209.340000'
2025-04-26 14:59:35 (788066): Status Report: Elapsed Time: '12000.000000'
2025-04-26 14:59:35 (788066): Status Report: CPU Time: '72032.720000'
2025-04-26 16:38:37 (788066): Status Report: Elapsed Time: '18000.000000'
2025-04-26 16:38:37 (788066): Status Report: CPU Time: '111182.330000'
2025-04-26 17:12:16 (788066): Guest Log:  *** Job finished ***
2025-04-26 17:12:16 (788066): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:02,033 | INFO     | [payload] failed_post thread has finished
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:03,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:07,166 | INFO     | [data] queue_monitor thread has finished
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:08,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305797461824)>', '<ExcThread(monitor, started 140305198196480)>']
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:08,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:08,672 | INFO     | [monitor] control thread has ended
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,543 | INFO     | all workflow threads have been joined
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,543 | INFO     | end of generic workflow (traces error code: 0)
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,543 | INFO     | traces error code: 0
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,628 [wrapper] ==== pilot stdout END ====
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,633 [wrapper] ==== wrapper stdout RESUME ====
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,638 [wrapper] pilotpid: 6065
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,643 [wrapper] Pilot exit status: 0
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,847 [wrapper] pandaids: 6617270856
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,883 [wrapper] cleanup supervisor_pilot 20828 6066
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,888 [wrapper] Test setup, not cleaning
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,894 [wrapper] apfmon messages muted
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,899 [wrapper] ==== wrapper stdout END ====
2025-04-26 17:12:16 (788066): Guest Log: 2025-04-26 15:12:13,904 [wrapper] ==== wrapper stderr END ====
2025-04-26 17:12:16 (788066): Guest Log:  *** Error codes and diagnostics ***
2025-04-26 17:12:16 (788066): Guest Log:     "exeErrorCode": 0,
2025-04-26 17:12:16 (788066): Guest Log:     "exeErrorDiag": "",
2025-04-26 17:12:16 (788066): Guest Log:     "pilotErrorCode": 0,
2025-04-26 17:12:16 (788066): Guest Log:     "pilotErrorDiag": "",
2025-04-26 17:12:16 (788066): Guest Log:  *** Listing of results directory ***
2025-04-26 17:12:16 (788066): Guest Log: total 202324
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 05:02 pilot3.tar.gz
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 05:18 queuedata.json
2025-04-26 17:12:16 (788066): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 05:19 runpilot2-wrapper.sh
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas    508877 Apr 26 09:42 input.tar.gz
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 26 09:42 start_atlas.sh
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas      9072 Apr 26 09:42 init_data.xml
2025-04-26 17:12:16 (788066): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 26 09:42 EVNT.44292255._000237.pool.root.1 -> /data/./ATLAS.root_0
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr 26 09:42 pandaJob.out
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas       424 Apr 26 09:43 setup.sh.local
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas    993158 Apr 26 09:45 agis_schedconf.cvmfs.json
2025-04-26 17:12:16 (788066): Guest Log: drwx------. 4 atlas atlas      4096 Apr 26 09:45 pilot3
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas 199552604 Apr 26 15:11 HITS.44292257._005863.pool.root.1
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas        95 Apr 26 15:11 pilot_heartbeat.json
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas      1035 Apr 26 15:11 memory_monitor_summary.json
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 26 15:11 agis_ddmendpoints.agis.ALL.json
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas    419394 Apr 26 15:11 log.44292257._005863.job.log.tgz.1
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas      7699 Apr 26 15:11 heartbeat.json
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 26 15:12 pilotlog.txt
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas   1503546 Apr 26 15:12 log.44292257._005863.job.log.1
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas       357 Apr 26 15:12 output.list
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 26 15:12 runtime_log
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas   1945600 Apr 26 15:12 result.tar.gz
2025-04-26 17:12:16 (788066): Guest Log: -rw-r--r--. 1 atlas atlas     10971 Apr 26 15:12 runtime_log.err
2025-04-26 17:12:16 (788066): Guest Log: -rw-------. 1 atlas atlas       673 Apr 26 15:12 ordMDmz7mS7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm4upLDmLct8pm.diag
2025-04-26 17:12:17 (788066): Guest Log: Looking for outputfile HITS.44292257._005863.pool.root.1
2025-04-26 17:12:17 (788066): Guest Log: HITS file was successfully produced
2025-04-26 17:12:17 (788066): Guest Log: -rw-------. 1 atlas atlas 199552604 Apr 26 15:11 /home/atlas/RunAtlas/HITS.44292257._005863.pool.root.1
2025-04-26 17:12:17 (788066): Guest Log: Successfully finished the ATLAS job!
2025-04-26 17:12:17 (788066): Guest Log: Copying the results back to the shared directory!
2025-04-26 17:12:17 (788066): Guest Log:  *** Contents of shared directory: ***
2025-04-26 17:12:17 (788066): Guest Log: total 219432
2025-04-26 17:12:17 (788066): Guest Log: -rw-r--r--. 1 root root 222203543 Apr 26 09:41 ATLAS.root_0
2025-04-26 17:12:17 (788066): Guest Log: -rw-r--r--. 1 root root      9072 Apr 26 09:41 init_data.xml
2025-04-26 17:12:17 (788066): Guest Log: -rw-r--r--. 1 root root    508877 Apr 26 09:41 input.tar.gz
2025-04-26 17:12:17 (788066): Guest Log: -rw-r--r--. 1 root root   1945600 Apr 26 15:12 result.tar.gz
2025-04-26 17:12:17 (788066): Guest Log: -rw-r--r--. 1 root root     17569 Apr 26 09:41 start_atlas.sh
2025-04-26 17:12:17 (788066): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-26 17:12:17 (788066): VM Completion File Detected.
2025-04-26 17:12:17 (788066): Powering off VM.
2025-04-26 17:12:17 (788066): Successfully stopped VM.
2025-04-26 17:12:17 (788066): Deregistering VM. (boinc_d2f59f97e5a320c9, slot#3)
2025-04-26 17:12:17 (788066): Removing network bandwidth throttle group from VM.
2025-04-26 17:12:18 (788066): Removing VM from VirtualBox.
17:12:23 (788066): called boinc_finish(0)

</stderr_txt>
]]>

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