Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-20 19:23:00 (17108): Detected: vboxwrapper 26206
2025-04-20 19:23:00 (17108): Detected: BOINC client v7.16.11
2025-04-20 19:23:00 (17108): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-04-20 19:23:00 (17108): Successfully copied 'init_data.xml' to the shared directory.
2025-04-20 19:23:01 (17108): Create VM. (boinc_20d71e1be9a27897, slot#8)
2025-04-20 19:23:01 (17108): Setting Memory Size for VM. (4700MB)
2025-04-20 19:23:02 (17108): Setting CPU Count for VM. (7)
2025-04-20 19:23:02 (17108): Setting Chipset Options for VM.
2025-04-20 19:23:02 (17108): Setting Graphics Controller Options for VM.
2025-04-20 19:23:02 (17108): Setting Boot Options for VM.
2025-04-20 19:23:03 (17108): Setting Network Configuration for NAT.
2025-04-20 19:23:03 (17108): Enabling VM Network Access.
2025-04-20 19:23:03 (17108): Disabling USB Support for VM.
2025-04-20 19:23:03 (17108): Disabling COM Port Support for VM.
2025-04-20 19:23:04 (17108): Disabling LPT Port Support for VM.
2025-04-20 19:23:04 (17108): Disabling Audio Support for VM.
2025-04-20 19:23:04 (17108): Disabling Clipboard Support for VM.
2025-04-20 19:23:04 (17108): Disabling Drag and Drop Support for VM.
2025-04-20 19:23:05 (17108): Adding storage controller(s) to VM.
2025-04-20 19:23:05 (17108): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-20 19:23:05 (17108): Adding VirtualBox Guest Additions to VM.
2025-04-20 19:23:06 (17108): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-20 19:23:06 (17108): forwarding host port 52897 to guest port 80
2025-04-20 19:23:06 (17108): Enabling remote desktop for VM.
2025-04-20 19:23:06 (17108): Required extension pack not installed, remote desktop not enabled.
2025-04-20 19:23:06 (17108): Enabling shared directory for VM.
2025-04-20 19:23:07 (17108): Starting VM using VBoxManage interface. (boinc_20d71e1be9a27897, slot#8)
2025-04-20 19:23:11 (17108): Successfully started VM. (PID = '11736')
2025-04-20 19:23:11 (17108): Reporting VM Process ID to BOINC.
2025-04-20 19:23:11 (17108): Guest Log: BIOS: VirtualBox 6.1.12
2025-04-20 19:23:11 (17108): Guest Log: CPUID EDX: 0x178bfbff
2025-04-20 19:23:11 (17108): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-20 19:23:11 (17108): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-20 19:23:11 (17108): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-20 19:23:11 (17108): Detected: Web Application Enabled (http://localhost:52897)
2025-04-20 19:23:11 (17108): Preference change detected
2025-04-20 19:23:11 (17108): Setting CPU throttle for VM. (40%)
2025-04-20 19:23:11 (17108): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 19:23:13 (17108): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-20 19:23:13 (17108): Guest Log: BIOS: Booting from Hard Disk...
2025-04-20 19:23:17 (17108): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-20 19:23:17 (17108): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-20 19:23:17 (17108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-20 19:23:29 (17108): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-20 19:23:29 (17108): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-20 19:23:40 (17108): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000134 main     Log opened 2025-04-20T19:23:37.684705000Z
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000243 main     OS Product: Linux
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000274 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000298 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000323 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000323 main     Process ID: 1350
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.000324 main     Package type: LINUX_64BITS_GENERIC
2025-04-20 19:23:40 (17108): Guest Log: 00:00:00.001507 main     5.2.32 r132073 started. Verbose level = 0
2025-04-20 19:23:40 (17108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-20 19:23:40 (17108): Guest Log: [INFO] Mounting shared directory
2025-04-20 19:23:40 (17108): Guest Log: [INFO] Checking for init_data.xml
2025-04-20 19:23:45 (17108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-20 19:23:45 (17108): Guest Log: [INFO] Detected branch: prod
2025-04-20 19:23:45 (17108): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-20 19:23:45 (17108): Guest Log: Copying input files
2025-04-20 19:23:50 (17108): Guest Log: 00:00:10.004277 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 312 693 000ns (GuestNow=1 745 173 429 375 562 000 ns GuestLast=1 745 177 017 688 255 000 ns fSetTimeLastLoop=true )
2025-04-20 19:23:50 (17108): Guest Log: Copied input files into RunAtlas.
2025-04-20 19:23:50 (17108): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-20 19:23:50 (17108): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-20 19:23:50 (17108): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-20 19:23:50 (17108): Guest Log: Further information can be found at the LHC@home message board.
2025-04-20 19:24:00 (17108): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-20 19:24:01 (17108): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-20 19:24:01 (17108): Guest Log: 2.6.3.0 1625 0 30168 145084 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-20 19:24:02 (17108): Guest Log: copied the webapp to /var/www
2025-04-20 19:24:02 (17108): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-20 19:24:02 (17108): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-20 19:24:02 (17108): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-20 19:24:02 (17108): Guest Log:  *** Starting ATLAS job. (PandaID=6609748424 taskID=44178468) ***
2025-04-20 19:30:08 (17108): Guest Log:  *** Job finished ***
2025-04-20 19:30:08 (17108): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:29:56,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:29:56,537 | INFO     | [data] copytool_out thread has finished
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:00,564 | INFO     | [data] queue_monitor thread has finished
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:01,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564556187456)>', '<ExcThread(monitor, started 140564104193792)>']
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:01,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:01,293 | INFO     | [monitor] control thread has ended
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,196 | INFO     | all workflow threads have been joined
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,197 | INFO     | end of generic workflow (traces error code: 0)
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,197 | INFO     | traces error code: 0
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,336 [wrapper] ==== pilot stdout END ====
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,340 [wrapper] ==== wrapper stdout RESUME ====
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,345 [wrapper] pilotpid: 5973
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,407 [wrapper] Pilot exit status: 0
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,567 [wrapper] pandaids: 6609748424
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,605 [wrapper] cleanup supervisor_pilot  5979 5974
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,610 [wrapper] Test setup, not cleaning
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,616 [wrapper] apfmon messages muted
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,621 [wrapper] ==== wrapper stdout END ====
2025-04-20 19:30:08 (17108): Guest Log: 2025-04-20 18:30:06,626 [wrapper] ==== wrapper stderr END ====
2025-04-20 19:30:08 (17108): Guest Log:  *** Error codes and diagnostics ***
2025-04-20 19:30:08 (17108): Guest Log:     "exeErrorCode": 0,
2025-04-20 19:30:08 (17108): Guest Log:     "exeErrorDiag": "",
2025-04-20 19:30:08 (17108): Guest Log:     "pilotErrorCode": 1305,
2025-04-20 19:30:08 (17108): Guest Log:     "pilotErrorDiag": "Failed to execute payload:/bin/bash: Sim_tf.py: command not found",
2025-04-20 19:30:08 (17108): Guest Log:  *** Listing of results directory ***
2025-04-20 19:30:08 (17108): Guest Log: total 3876
2025-04-20 19:30:08 (17108): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 20 13:28 pilot3.tar.gz
2025-04-20 19:30:08 (17108): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 20 13:47 queuedata.json
2025-04-20 19:30:08 (17108): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 20 13:52 runpilot2-wrapper.sh
2025-04-20 19:30:08 (17108): Guest Log: -rwxr-xr-x. 1 atlas atlas   12649 Apr 20 18:23 init_data.xml
2025-04-20 19:30:08 (17108): Guest Log: -rwxr-xr-x. 1 atlas atlas  508888 Apr 20 18:23 input.tar.gz
2025-04-20 19:30:08 (17108): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 20 18:23 start_atlas.sh
2025-04-20 19:30:08 (17108): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 20 18:23 EVNT.44178466._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-04-20 19:30:08 (17108): Guest Log: -rw-r--r--. 1 atlas atlas    2589 Apr 20 18:24 pandaJob.out
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas     424 Apr 20 18:24 setup.sh.local
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas  991284 Apr 20 18:25 agis_schedconf.cvmfs.json
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 20 18:25 agis_ddmendpoints.agis.ALL.json
2025-04-20 19:30:08 (17108): Guest Log: drwx------. 4 atlas atlas    4096 Apr 20 18:25 pilot3
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas    8248 Apr 20 18:27 log.44178468._000032.job.log.tgz.1
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas      95 Apr 20 18:29 pilot_heartbeat.json
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas    2220 Apr 20 18:29 heartbeat.json
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas    4722 Apr 20 18:30 pilotlog.txt
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas   84163 Apr 20 18:30 log.44178468._000032.job.log.1
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas     188 Apr 20 18:30 output.list
2025-04-20 19:30:08 (17108): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 20 18:30 runtime_log
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas  102400 Apr 20 18:30 result.tar.gz
2025-04-20 19:30:08 (17108): Guest Log: -rw-r--r--. 1 atlas atlas   10773 Apr 20 18:30 runtime_log.err
2025-04-20 19:30:08 (17108): Guest Log: -rw-------. 1 atlas atlas     636 Apr 20 18:30 NCGODmqGkQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmZr7KDmze9X2m.diag
2025-04-20 19:30:08 (17108): Guest Log: Looking for outputfile HITS.44178468._000032.pool.root.1
2025-04-20 19:30:09 (17108): Guest Log: No HITS file was produced
2025-04-20 19:30:09 (17108): Guest Log: Successfully finished the ATLAS job!
2025-04-20 19:30:09 (17108): Guest Log: Copying the results back to the shared directory!
2025-04-20 19:30:09 (17108): Guest Log:  *** Contents of shared directory: ***
2025-04-20 19:30:09 (17108): Guest Log: total 313196
2025-04-20 19:30:09 (17108): Guest Log: -rwxrwxrwx. 1 root root 320061102 Apr 20 18:23 ATLAS.root_0
2025-04-20 19:30:09 (17108): Guest Log: -rwxrwxrwx. 1 root root     12649 Apr 20 18:23 init_data.xml
2025-04-20 19:30:09 (17108): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 20 16:41 input.tar.gz
2025-04-20 19:30:09 (17108): Guest Log: -rwxrwxrwx. 1 root root    102400 Apr 20 18:30 result.tar.gz
2025-04-20 19:30:09 (17108): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 20 16:41 start_atlas.sh
2025-04-20 19:30:09 (17108): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-20 19:30:09 (17108): VM Completion File Detected.
2025-04-20 19:30:09 (17108): Powering off VM.
2025-04-20 19:30:10 (17108): Successfully stopped VM.
2025-04-20 19:30:10 (17108): Deregistering VM. (boinc_20d71e1be9a27897, slot#8)
2025-04-20 19:30:10 (17108): Removing network bandwidth throttle group from VM.
2025-04-20 19:30:10 (17108): Removing VM from VirtualBox.
19:30:15 (17108): called boinc_finish(0)

</stderr_txt>
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