Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-20 09:36:30 (6276): Detected: vboxwrapper 26206
2025-04-20 09:36:30 (6276): Detected: BOINC client v7.22.2
2025-04-20 09:36:32 (6276): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-20 09:36:32 (6276): Successfully copied 'init_data.xml' to the shared directory.
2025-04-20 09:36:33 (6276): Create VM. (boinc_86cdc04dbaafcbd4, slot#1)
2025-04-20 09:36:33 (6276): Setting Memory Size for VM. (4700MB)
2025-04-20 09:36:34 (6276): Setting CPU Count for VM. (7)
2025-04-20 09:36:34 (6276): Setting Chipset Options for VM.
2025-04-20 09:36:34 (6276): Setting Graphics Controller Options for VM.
2025-04-20 09:36:35 (6276): Setting Boot Options for VM.
2025-04-20 09:36:35 (6276): Setting Network Configuration for NAT.
2025-04-20 09:36:35 (6276): Enabling VM Network Access.
2025-04-20 09:36:36 (6276): Disabling USB Support for VM.
2025-04-20 09:36:36 (6276): Disabling COM Port Support for VM.
2025-04-20 09:36:36 (6276): Disabling LPT Port Support for VM.
2025-04-20 09:36:37 (6276): Disabling Audio Support for VM.
2025-04-20 09:36:37 (6276): Disabling Clipboard Support for VM.
2025-04-20 09:36:37 (6276): Disabling Drag and Drop Support for VM.
2025-04-20 09:36:38 (6276): Adding storage controller(s) to VM.
2025-04-20 09:36:38 (6276): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-20 09:36:42 (6276): Adding VirtualBox Guest Additions to VM.
2025-04-20 09:36:42 (6276): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-20 09:36:42 (6276): forwarding host port 60541 to guest port 80
2025-04-20 09:36:42 (6276): Enabling remote desktop for VM.
2025-04-20 09:36:43 (6276): Required extension pack not installed, remote desktop not enabled.
2025-04-20 09:36:43 (6276): Enabling shared directory for VM.
2025-04-20 09:36:43 (6276): Starting VM using VBoxManage interface. (boinc_86cdc04dbaafcbd4, slot#1)
2025-04-20 09:36:54 (6276): Successfully started VM. (PID = '4428')
2025-04-20 09:36:54 (6276): Reporting VM Process ID to BOINC.
2025-04-20 09:36:54 (6276): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-20 09:36:54 (6276): Guest Log: CPUID EDX: 0x178bfbff
2025-04-20 09:36:54 (6276): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-20 09:36:54 (6276): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-20 09:36:54 (6276): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-20 09:36:54 (6276): Detected: Web Application Enabled (http://localhost:60541)
2025-04-20 09:36:54 (6276): Preference change detected
2025-04-20 09:36:54 (6276): Setting CPU throttle for VM. (75%)
2025-04-20 09:36:55 (6276): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 09:36:56 (6276): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-20 09:36:56 (6276): Guest Log: BIOS: Booting from Hard Disk...
2025-04-20 09:37:00 (6276): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-20 09:37:00 (6276): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-20 09:37:00 (6276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-20 09:38:16 (6276): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-20 09:38:16 (6276): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-20 09:38:49 (6276): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000325 main     Log opened 2025-04-20T09:38:47.721892000Z
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000573 main     OS Product: Linux
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000659 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000724 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000816 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000818 main     Process ID: 1315
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.000819 main     Package type: LINUX_64BITS_GENERIC
2025-04-20 09:38:49 (6276): Guest Log: 00:00:00.002505 main     5.2.32 r132073 started. Verbose level = 0
2025-04-20 09:38:51 (6276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-20 09:38:51 (6276): Guest Log: [INFO] Mounting shared directory
2025-04-20 09:38:51 (6276): Guest Log: [INFO] Checking for init_data.xml
2025-04-20 09:38:59 (6276): Guest Log: 00:00:10.008538 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 386 914 728 000ns (GuestNow=1 745 156 314 643 822 000 ns GuestLast=1 745 141 927 729 094 000 ns fSetTimeLastLoop=true )
2025-04-20 09:39:01 (6276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-20 09:39:01 (6276): Guest Log: [INFO] Detected branch: prod
2025-04-20 09:39:01 (6276): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-20 09:39:01 (6276): Guest Log: Copying input files
2025-04-20 09:39:06 (6276): Guest Log: Copied input files into RunAtlas.
2025-04-20 09:39:06 (6276): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-20 09:39:06 (6276): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-20 09:39:06 (6276): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-20 09:39:06 (6276): Guest Log: Further information can be found at the LHC@home message board.
2025-04-20 09:39:19 (6276): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-20 09:39:19 (6276): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-20 09:39:19 (6276): Guest Log: 2.6.3.0 1597 0 31988 145076 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-20 09:39:31 (6276): Guest Log: copied the webapp to /var/www
2025-04-20 09:39:31 (6276): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-20 09:39:31 (6276): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-20 09:39:31 (6276): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-20 09:39:31 (6276): Guest Log:  *** Starting ATLAS job. (PandaID=6608625960 taskID=44075483) ***
2025-04-20 09:51:40 (6276): Guest Log:  *** Job finished ***
2025-04-20 09:51:40 (6276): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:04,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:05,808 | INFO     | [job] queue monitor thread has finished
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:07,314 | INFO     | [data] queue_monitor thread has finished
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:08,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642605606720)>', '<ExcThread(monitor, started 140641648502528)>']
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:09,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:09,095 | INFO     | [monitor] control thread has ended
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,264 | INFO     | all workflow threads have been joined
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,265 | INFO     | end of generic workflow (traces error code: 0)
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,266 | INFO     | traces error code: 0
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,684 [wrapper] ==== pilot stdout END ====
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,708 [wrapper] ==== wrapper stdout RESUME ====
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,730 [wrapper] pilotpid: 5977
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,753 [wrapper] Pilot exit status: 0
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:13,934 [wrapper] pandaids: 6608625960
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:14,083 [wrapper] cleanup supervisor_pilot  5983 5978
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:14,102 [wrapper] Test setup, not cleaning
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:14,122 [wrapper] apfmon messages muted
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:14,140 [wrapper] ==== wrapper stdout END ====
2025-04-20 09:51:40 (6276): Guest Log: 2025-04-20 13:51:14,160 [wrapper] ==== wrapper stderr END ====
2025-04-20 09:51:40 (6276): Guest Log:  *** Error codes and diagnostics ***
2025-04-20 09:51:40 (6276): Guest Log:     "exeErrorCode": 65,
2025-04-20 09:51:40 (6276): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-20 09:51:40 (6276): Guest Log:     "pilotErrorCode": 1305,
2025-04-20 09:51:40 (6276): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-20 09:51:40 (6276): Guest Log:  *** Listing of results directory ***
2025-04-20 09:51:40 (6276): Guest Log: total 4184
2025-04-20 09:51:40 (6276): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 20 04:28 pilot3.tar.gz
2025-04-20 09:51:40 (6276): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 20 04:39 queuedata.json
2025-04-20 09:51:40 (6276): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 20 04:40 runpilot2-wrapper.sh
2025-04-20 09:51:40 (6276): Guest Log: -rwxr-xr-x. 1 atlas atlas    6103 Apr 20 13:38 init_data.xml
2025-04-20 09:51:40 (6276): Guest Log: -rwxr-xr-x. 1 atlas atlas  508888 Apr 20 13:38 input.tar.gz
2025-04-20 09:51:40 (6276): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 20 13:38 start_atlas.sh
2025-04-20 09:51:40 (6276): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 20 13:38 EVNT.44075481._003574.pool.root.1 -> /data/./ATLAS.root_0
2025-04-20 09:51:40 (6276): Guest Log: -rw-r--r--. 1 atlas atlas    2577 Apr 20 13:39 pandaJob.out
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas     424 Apr 20 13:39 setup.sh.local
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas  991292 Apr 20 13:40 agis_schedconf.cvmfs.json
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 20 13:40 agis_ddmendpoints.agis.ALL.json
2025-04-20 09:51:40 (6276): Guest Log: drwx------. 4 atlas atlas    4096 Apr 20 13:40 pilot3
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas   51770 Apr 20 13:48 log.44075483._092713.job.log.tgz.1
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas      95 Apr 20 13:50 pilot_heartbeat.json
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas    8124 Apr 20 13:50 heartbeat.json
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 20 13:51 pilotlog.txt
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas  196914 Apr 20 13:51 log.44075483._092713.job.log.1
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas     188 Apr 20 13:51 output.list
2025-04-20 09:51:40 (6276): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 20 13:51 runtime_log
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas  266240 Apr 20 13:51 result.tar.gz
2025-04-20 09:51:40 (6276): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Apr 20 13:51 runtime_log.err
2025-04-20 09:51:40 (6276): Guest Log: -rw-------. 1 atlas atlas     647 Apr 20 13:51 oASMDmiebQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDijLDmV3lOlm.diag
2025-04-20 09:51:40 (6276): Guest Log: Looking for outputfile HITS.44075483._092713.pool.root.1
2025-04-20 09:51:40 (6276): Guest Log: No HITS file was produced
2025-04-20 09:51:40 (6276): Guest Log: Successfully finished the ATLAS job!
2025-04-20 09:51:40 (6276): Guest Log: Copying the results back to the shared directory!
2025-04-20 09:51:40 (6276): Guest Log:  *** Contents of shared directory: ***
2025-04-20 09:51:40 (6276): Guest Log: total 217844
2025-04-20 09:51:40 (6276): Guest Log: -rwxrwxrwx. 1 root root 222261638 Apr 20 13:36 ATLAS.root_0
2025-04-20 09:51:40 (6276): Guest Log: -rwxrwxrwx. 1 root root      6103 Apr 20 13:36 init_data.xml
2025-04-20 09:51:40 (6276): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 20 10:37 input.tar.gz
2025-04-20 09:51:40 (6276): Guest Log: -rwxrwxrwx. 1 root root    266240 Apr 20  2025 result.tar.gz
2025-04-20 09:51:40 (6276): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 20 10:37 start_atlas.sh
2025-04-20 09:51:40 (6276): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-20 09:51:40 (6276): VM Completion File Detected.
2025-04-20 09:51:40 (6276): Powering off VM.
2025-04-20 09:51:42 (6276): Successfully stopped VM.
2025-04-20 09:51:42 (6276): Deregistering VM. (boinc_86cdc04dbaafcbd4, slot#1)
2025-04-20 09:51:42 (6276): Removing network bandwidth throttle group from VM.
2025-04-20 09:51:42 (6276): Removing VM from VirtualBox.
09:51:48 (6276): called boinc_finish(0)

</stderr_txt>
]]>

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