Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:41:48 (1803578): wrapper (7.7.26015): starting
15:41:48 (1803578): wrapper: running run_atlas (--nthreads 3)
[2025-04-20 15:41:48] Arguments: --nthreads 3
[2025-04-20 15:41:48] Threads: 3
[2025-04-20 15:41:48] Checking for CVMFS
[2025-04-20 15:41:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-20 15:41:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-20 15:41:48] Running cvmfs_config stat atlas.cern.ch
[2025-04-20 15:41:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-20 15:41:49] 2.9.2.0 66143 5957 73008 145076 0 56 28687892 36864001 0 130560 0 4456452 99.991 1547315 6820 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-20 15:41:49] CVMFS is ok
[2025-04-20 15:41:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-20 15:41:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-20 15:41:49] Further information can be found at the LHC@home message board.
[2025-04-20 15:41:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-20 15:41:49] Checking for apptainer binary...
[2025-04-20 15:41:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-20 15:41:49] Running /usr/bin/apptainer --version
[2025-04-20 15:41:49] apptainer version 1.3.6-6.1
[2025-04-20 15:41:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-20 15:41:49] atlasA141
[2025-04-20 15:41:49] apptainer works
[2025-04-20 15:41:49] Set ATHENA_PROC_NUMBER=3
[2025-04-20 15:41:49] Set ATHENA_CORE_NUMBER=3
[2025-04-20 15:41:49] Starting ATLAS job with PandaID=6608565524
[2025-04-20 15:41:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 17:18:38]  *** The last 200 lines of the pilot log: ***
[2025-04-20 17:18:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-20 17:18:38]  is_altstaged=None
[2025-04-20 17:18:38]  is_tar=False
[2025-04-20 17:18:38]  lfn=log.44075483._092089.job.log.tgz.1
[2025-04-20 17:18:38]  mtime=0
[2025-04-20 17:18:38]  protocol_id=None
[2025-04-20 17:18:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-20 17:18:38]  replicas=None
[2025-04-20 17:18:38]  scope=mc23_13p6TeV
[2025-04-20 17:18:38]  status=None
[2025-04-20 17:18:38]  status_code=0
[2025-04-20 17:18:38]  storage_token=
[2025-04-20 17:18:38]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6608565524/log.44075483._092089.job.log.tgz.1
[2025-04-20 17:18:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/6c/log.44075483._092089.job.log.tgz.1
[2025-04-20 17:18:38]  workdir=None
[2025-04-20 17:18:38] ]
[2025-04-20 17:18:38] 2025-04-20 15:18:11,389 | INFO     | transferring file log.44075483._092089.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6608565524/log.44075483._092089.job.log.tgz.1 to /local/data/boinc/
[2025-04-20 17:18:38] 2025-04-20 15:18:11,389 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6608565524/log.44075483._092089.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0920
[2025-04-20 17:18:38] 2025-04-20 15:18:11,401 | INFO     | adding to output.list: log.44075483._092089.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/6c/log.44075483._092089.job.log.tg
[2025-04-20 17:18:38] 2025-04-20 15:18:11,402 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-20 17:18:38] 2025-04-20 15:18:11,402 | INFO     | summary of transferred files:
[2025-04-20 17:18:38] 2025-04-20 15:18:11,402 | INFO     |  -- lfn=log.44075483._092089.job.log.tgz.1, status_code=0, status=transferred
[2025-04-20 17:18:38] 2025-04-20 15:18:11,402 | INFO     | stage-out finished correctly
[2025-04-20 17:18:38] 2025-04-20 15:18:11,856 | INFO     | monitor loop #444: job 0:6608565524 is in state 'finished'
[2025-04-20 17:18:38] 2025-04-20 15:18:11,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 17:18:38] 2025-04-20 15:18:13,691 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | job 6608565524 has state=finished
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | preparing for final server update for job 6608565524 in state='finished'
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | this job has now completed (state=finished)
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | log transfer has been attempted: DONE
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | job 6608565524 has finished - writing final server update
[2025-04-20 17:18:38] 2025-04-20 15:18:13,724 | INFO     | total number of processed events: 400 (read)
[2025-04-20 17:18:38] 2025-04-20 15:18:13,725 | INFO     | executing command: lscpu
[2025-04-20 17:18:38] 2025-04-20 15:18:13,739 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-20 17:18:38] 2025-04-20 15:18:14,359 | INFO     | monitor loop #445: job 0:6608565524 is in state 'finished'
[2025-04-20 17:18:38] 2025-04-20 15:18:14,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 17:18:38] 2025-04-20 15:18:16,863 | INFO     | monitor loop #446: job 0:6608565524 is in state 'finished'
[2025-04-20 17:18:38] 2025-04-20 15:18:16,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,061 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-20 17:18:38] 2025-04-20 15:18:19,061 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6608565524/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,062 | INFO     | extracted standard info from prmon json
[2025-04-20 17:18:38] 2025-04-20 15:18:19,062 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 17:18:38] 2025-04-20 15:18:19,062 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 17:18:38] 2025-04-20 15:18:19,062 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 17:18:38] 2025-04-20 15:18:19,062 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | fitting pss+swap vs Time
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | sum of square deviations: 211285822.0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | sum of deviations: 2531466236.499998
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | mean x: 1745159502.5
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | mean y: 2376825.534090909
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | -- intersect: -20906798792.912678
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | intersect: -20906798792.912678
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | chi2: 1.4891634309731725
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | -- intersect: -20906798792.912678
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | current memory leak: 11.98 B/s (using 88 data points, chi2=1.49)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | ..............................
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | . Timing measurements:
[2025-04-20 17:18:38] 2025-04-20 15:18:19,063 | INFO     | . get job = 0 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . initial setup = 1 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . payload setup = 5 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . stage-in = 0 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . payload execution = 5747 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . stage-out = 0 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | . log creation = 0 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,064 | INFO     | ..............................
[2025-04-20 17:18:38] 2025-04-20 15:18:19,451 | INFO     | 
[2025-04-20 17:18:38] 2025-04-20 15:18:19,451 | INFO     | job summary report
[2025-04-20 17:18:38] 2025-04-20 15:18:19,451 | INFO     | --------------------------------------------------
[2025-04-20 17:18:38] 2025-04-20 15:18:19,451 | INFO     | PanDA job id: 6608565524
[2025-04-20 17:18:38] 2025-04-20 15:18:19,451 | INFO     | task id: 44075483
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | errors: (none)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | pilot state: finished 
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | transexitcode: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | exeerrorcode: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | exeerrordiag: 
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | exitcode: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,452 | INFO     | exitmsg: OK
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | cpuconsumptiontime: 15339 s
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | nevents: 400
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | neventsw: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | pid: 1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | pgrp: 1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | corecount: 3
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | event service: False
[2025-04-20 17:18:38] 2025-04-20 15:18:19,453 | INFO     | sizes: {0: 2426774, 5: 2426980, 10: 2427036, 5756: 2453677, 5757: 2462624, 5759: 2462680, 5764: 2462978}
[2025-04-20 17:18:38] 2025-04-20 15:18:19,454 | INFO     | --------------------------------------------------
[2025-04-20 17:18:38] 2025-04-20 15:18:19,454 | INFO     | 
[2025-04-20 17:18:38] 2025-04-20 15:18:19,454 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,468 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 17:18:38] 2025-04-20 15:18:19,469 | INFO     | job 6608565524 has completed (purged errors)
[2025-04-20 17:18:38] 2025-04-20 15:18:19,469 | INFO     | overall cleanup function is called
[2025-04-20 17:18:38] 2025-04-20 15:18:20,475 | INFO     | --- collectZombieJob: --- 10, [1813676]
[2025-04-20 17:18:38] 2025-04-20 15:18:20,475 | INFO     | zombie collector waiting for pid 1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:20,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 17:18:38] 2025-04-20 15:18:20,476 | INFO     | collected zombie processes
[2025-04-20 17:18:38] 2025-04-20 15:18:20,476 | INFO     | will attempt to kill all subprocesses of pid=1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:20,516 | INFO     | process IDs to be killed: [1813676] (in reverse order)
[2025-04-20 17:18:38] 2025-04-20 15:18:20,544 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 17:18:38] 2025-04-20 15:18:20,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 17:18:38] 2025-04-20 15:18:20,545 | INFO     | did not find any defunct processes belonging to 1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:20,546 | INFO     | did not find any defunct processes belonging to 1813676
[2025-04-20 17:18:38] 2025-04-20 15:18:20,546 | INFO     | ready for new job
[2025-04-20 17:18:38] 2025-04-20 15:18:20,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | **************************************
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | **************************************
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | 
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | architecture information:
[2025-04-20 17:18:38] 2025-04-20 15:18:20,547 | INFO     | executing command: cat /etc/os-release
[2025-04-20 17:18:38] 2025-04-20 15:18:20,557 | INFO     | cat /etc/os-release:
[2025-04-20 17:18:38] NAME="CentOS Linux"
[2025-04-20 17:18:38] VERSION="7 (Core)"
[2025-04-20 17:18:38] ID="centos"
[2025-04-20 17:18:38] ID_LIKE="rhel fedora"
[2025-04-20 17:18:38] VERSION_ID="7"
[2025-04-20 17:18:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 17:18:38] ANSI_COLOR="0;31"
[2025-04-20 17:18:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 17:18:38] HOME_URL="https://www.centos.org/"
[2025-04-20 17:18:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 17:18:38] 
[2025-04-20 17:18:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 17:18:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 17:18:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 17:18:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 17:18:38] 
[2025-04-20 17:18:38] 2025-04-20 15:18:20,557 | INFO     | **************************************
[2025-04-20 17:18:38] 2025-04-20 15:18:21,060 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | INFO     | sufficient remaining disk space (326826459136 B)
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | INFO     | update_server=False
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 17:18:38] 2025-04-20 15:18:21,074 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-20 17:18:38] 2025-04-20 15:18:21,075 | INFO     | aborting loop
[2025-04-20 17:18:38] 2025-04-20 15:18:21,075 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 17:18:38] 2025-04-20 15:18:21,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 17:18:38] 2025-04-20 15:18:21,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 17:18:38] 2025-04-20 15:18:21,486 | INFO     | all data control threads have been joined
[2025-04-20 17:18:38] 2025-04-20 15:18:21,708 | INFO     | all job control threads have been joined
[2025-04-20 17:18:38] 2025-04-20 15:18:21,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 17:18:38] 2025-04-20 15:18:22,080 | INFO     | [job] retrieve thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,081 | INFO     | [job] queue monitor thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,082 | INFO     | [job] job monitor thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,178 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,492 | INFO     | [data] control thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,510 | INFO     | all payload control threads have been joined
[2025-04-20 17:18:38] 2025-04-20 15:18:22,575 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:22,714 | INFO     | [job] control thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,082 | INFO     | [data] copytool_in thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,313 | INFO     | [payload] validate_post thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,462 | INFO     | [job] validate thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,516 | INFO     | [payload] control thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,529 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,621 | INFO     | [payload] failed_post thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:23,958 | INFO     | [data] copytool_out thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:24,235 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 17:18:38] 2025-04-20 15:18:28,242 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:31,499 | INFO     | job.realtimelogging is not enabled
[2025-04-20 17:18:38] 2025-04-20 15:18:32,505 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 17:18:38] 2025-04-20 15:18:32,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943026210624)>', '<ExcThread(monitor, started 139942130849536)>']
[2025-04-20 17:18:38] 2025-04-20 15:18:33,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 17:18:38] 2025-04-20 15:18:33,129 | INFO     | [monitor] control thread has ended
[2025-04-20 17:18:38] 2025-04-20 15:18:37,884 | INFO     | all workflow threads have been joined
[2025-04-20 17:18:38] 2025-04-20 15:18:37,884 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 17:18:38] 2025-04-20 15:18:37,885 | INFO     | traces error code: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:37,885 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 17:18:38] 2025-04-20 15:18:37,932 [wrapper] ==== pilot stdout END ====
[2025-04-20 17:18:38] 2025-04-20 15:18:37,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 17:18:38] 2025-04-20 15:18:37,938 [wrapper] pilotpid: 1807235
[2025-04-20 17:18:38] 2025-04-20 15:18:37,941 [wrapper] Pilot exit status: 0
[2025-04-20 17:18:38] 2025-04-20 15:18:37,949 [wrapper] pandaids: 6608565524
[2025-04-20 17:18:38] 2025-04-20 15:18:37,967 [wrapper] cleanup supervisor_pilot 1825947 1807236
[2025-04-20 17:18:38] 2025-04-20 15:18:37,970 [wrapper] Test setup, not cleaning
[2025-04-20 17:18:38] 2025-04-20 15:18:37,972 [wrapper] apfmon messages muted
[2025-04-20 17:18:38] 2025-04-20 15:18:37,975 [wrapper] ==== wrapper stdout END ====
[2025-04-20 17:18:38] 2025-04-20 15:18:37,977 [wrapper] ==== wrapper stderr END ====
[2025-04-20 17:18:38]  *** Error codes and diagnostics ***
[2025-04-20 17:18:38]     "exeErrorCode": 0,
[2025-04-20 17:18:38]     "exeErrorDiag": "",
[2025-04-20 17:18:38]     "pilotErrorCode": 0,
[2025-04-20 17:18:38]     "pilotErrorDiag": "",
[2025-04-20 17:18:38]  *** Listing of results directory ***
[2025-04-20 17:18:38] total 410960
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc    495897 Apr 20 05:40 pilot3.tar.gz
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc      5111 Apr 20 05:43 queuedata.json
[2025-04-20 17:18:38] -rwx------ 1 boinc boinc     37140 Apr 20 05:43 runpilot2-wrapper.sh
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc       100 Apr 20 15:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 17:18:38] -rwxr-xr-x 1 boinc boinc      7986 Apr 20 15:41 run_atlas
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc       105 Apr 20 15:41 job.xml
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc 222990041 Apr 20 15:41 EVNT.44075481._003600.pool.root.1
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc      6683 Apr 20 15:41 init_data.xml
[2025-04-20 17:18:38] drwxrwx--x 2 boinc boinc      4096 Apr 20 15:41 shared
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc    508890 Apr 20 15:41 input.tar.gz
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc     17569 Apr 20 15:41 start_atlas.sh
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc         0 Apr 20 15:41 boinc_lockfile
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc      2577 Apr 20 15:41 pandaJob.out
[2025-04-20 17:18:38] -rw------- 1 boinc boinc       424 Apr 20 15:41 setup.sh.local
[2025-04-20 17:18:38] -rw------- 1 boinc boinc    991292 Apr 20 15:41 agis_schedconf.cvmfs.json
[2025-04-20 17:18:38] -rw------- 1 boinc boinc   1618536 Apr 20 15:41 agis_ddmendpoints.agis.ALL.json
[2025-04-20 17:18:38] drwx------ 4 boinc boinc      4096 Apr 20 15:41 pilot3
[2025-04-20 17:18:38] -rw------- 1 boinc boinc        95 Apr 20 17:17 pilot_heartbeat.json
[2025-04-20 17:18:38] -rw------- 1 boinc boinc 192410153 Apr 20 17:17 HITS.44075483._092089.pool.root.1
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc       529 Apr 20 17:18 boinc_task_state.xml
[2025-04-20 17:18:38] -rw------- 1 boinc boinc      1018 Apr 20 17:18 memory_monitor_summary.json
[2025-04-20 17:18:38] -rw------- 1 boinc boinc    224633 Apr 20 17:18 log.44075483._092089.job.log.tgz.1
[2025-04-20 17:18:38] -rw------- 1 boinc boinc      7664 Apr 20 17:18 heartbeat.json
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc      8192 Apr 20 17:18 boinc_mmap_file
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc        27 Apr 20 17:18 wrapper_checkpoint.txt
[2025-04-20 17:18:38] -rw------- 1 boinc boinc      4552 Apr 20 17:18 pilotlog.txt
[2025-04-20 17:18:38] -rw------- 1 boinc boinc    555188 Apr 20 17:18 log.44075483._092089.job.log.1
[2025-04-20 17:18:38] -rw------- 1 boinc boinc       357 Apr 20 17:18 output.list
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc       620 Apr 20 17:18 runtime_log
[2025-04-20 17:18:38] -rw------- 1 boinc boinc    798720 Apr 20 17:18 result.tar.gz
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc     11114 Apr 20 17:18 runtime_log.err
[2025-04-20 17:18:38] -rw------- 1 boinc boinc       661 Apr 20 17:18 RRCMDmZlaQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmYZjLDmO58Mgn.diag
[2025-04-20 17:18:38] -rw-r--r-- 1 boinc boinc     21350 Apr 20 17:18 stderr.txt
[2025-04-20 17:18:38] HITS file was successfully produced:
[2025-04-20 17:18:38] -rw------- 1 boinc boinc 192410153 Apr 20 17:17 shared/HITS.pool.root.1
[2025-04-20 17:18:38]  *** Contents of shared directory: ***
[2025-04-20 17:18:38] total 406972
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc 222990041 Apr 20 15:41 ATLAS.root_0
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc    508890 Apr 20 15:41 input.tar.gz
[2025-04-20 17:18:38] -rw-r--r-- 2 boinc boinc     17569 Apr 20 15:41 start_atlas.sh
[2025-04-20 17:18:38] -rw------- 1 boinc boinc 192410153 Apr 20 17:17 HITS.pool.root.1
[2025-04-20 17:18:38] -rw------- 1 boinc boinc    798720 Apr 20 17:18 result.tar.gz
17:18:39 (1803578): run_atlas exited; CPU time 15368.402194
17:18:39 (1803578): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN