Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-20 04:36:24 (8148): Detected: vboxwrapper 26206
2025-04-20 04:36:24 (8148): Detected: BOINC client v7.22.2
2025-04-20 04:36:25 (8148): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-20 04:36:25 (8148): Successfully copied 'init_data.xml' to the shared directory.
2025-04-20 04:36:26 (8148): Create VM. (boinc_d1a04c678c166f5a, slot#26)
2025-04-20 04:36:27 (8148): Setting Memory Size for VM. (4800MB)
2025-04-20 04:36:27 (8148): Setting CPU Count for VM. (8)
2025-04-20 04:36:27 (8148): Setting Chipset Options for VM.
2025-04-20 04:36:27 (8148): Setting Graphics Controller Options for VM.
2025-04-20 04:36:28 (8148): Setting Boot Options for VM.
2025-04-20 04:36:28 (8148): Setting Network Configuration for NAT.
2025-04-20 04:36:28 (8148): Enabling VM Network Access.
2025-04-20 04:36:28 (8148): Disabling USB Support for VM.
2025-04-20 04:36:29 (8148): Disabling COM Port Support for VM.
2025-04-20 04:36:29 (8148): Disabling LPT Port Support for VM.
2025-04-20 04:36:29 (8148): Disabling Audio Support for VM.
2025-04-20 04:36:29 (8148): Disabling Clipboard Support for VM.
2025-04-20 04:36:30 (8148): Disabling Drag and Drop Support for VM.
2025-04-20 04:36:30 (8148): Adding storage controller(s) to VM.
2025-04-20 04:36:30 (8148): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-20 04:36:31 (8148): Adding VirtualBox Guest Additions to VM.
2025-04-20 04:36:32 (8148): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-20 04:36:32 (8148): forwarding host port 54715 to guest port 80
2025-04-20 04:36:32 (8148): Enabling remote desktop for VM.
2025-04-20 04:36:32 (8148): Required extension pack not installed, remote desktop not enabled.
2025-04-20 04:36:32 (8148): Enabling shared directory for VM.
2025-04-20 04:36:33 (8148): Starting VM using VBoxManage interface. (boinc_d1a04c678c166f5a, slot#26)
2025-04-20 04:36:37 (8148): Successfully started VM. (PID = '12352')
2025-04-20 04:36:37 (8148): Reporting VM Process ID to BOINC.
2025-04-20 04:36:37 (8148): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-20 04:36:37 (8148): Guest Log: CPUID EDX: 0x178bfbff
2025-04-20 04:36:37 (8148): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-20 04:36:37 (8148): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-20 04:36:37 (8148): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-20 04:36:37 (8148): Detected: Web Application Enabled (http://localhost:54715)
2025-04-20 04:36:37 (8148): Preference change detected
2025-04-20 04:36:37 (8148): Setting CPU throttle for VM. (100%)
2025-04-20 04:36:37 (8148): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 04:36:39 (8148): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-20 04:36:39 (8148): Guest Log: BIOS: Booting from Hard Disk...
2025-04-20 04:36:43 (8148): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-20 04:36:43 (8148): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-20 04:36:43 (8148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-20 04:37:01 (8148): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-20 04:37:01 (8148): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-20 04:37:07 (8148): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000247 main     Log opened 2025-04-20T04:37:05.068562000Z
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000326 main     OS Product: Linux
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000374 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000399 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000420 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000421 main     Process ID: 1367
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.000421 main     Package type: LINUX_64BITS_GENERIC
2025-04-20 04:37:07 (8148): Guest Log: 00:00:00.001275 main     5.2.32 r132073 started. Verbose level = 0
2025-04-20 04:37:07 (8148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-20 04:37:07 (8148): Guest Log: [INFO] Mounting shared directory
2025-04-20 04:37:07 (8148): Guest Log: [INFO] Checking for init_data.xml
2025-04-20 04:37:10 (8148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-20 04:37:10 (8148): Guest Log: [INFO] Detected branch: prod
2025-04-20 04:37:10 (8148): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-20 04:37:10 (8148): Guest Log: Copying input files
2025-04-20 04:37:11 (8148): Guest Log: Copied input files into RunAtlas.
2025-04-20 04:37:11 (8148): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-20 04:37:11 (8148): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-20 04:37:11 (8148): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-20 04:37:11 (8148): Guest Log: Further information can be found at the LHC@home message board.
2025-04-20 04:37:17 (8148): Guest Log: 00:00:10.063195 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 204 841 192 000ns (GuestNow=1 745 116 620 229 628 000 ns GuestLast=1 745 123 825 070 820 000 ns fSetTimeLastLoop=true )
2025-04-20 04:37:21 (8148): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-20 04:37:21 (8148): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-20 04:37:21 (8148): Guest Log: 2.6.3.0 1642 0 30180 145059 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-20 04:37:22 (8148): Guest Log: copied the webapp to /var/www
2025-04-20 04:37:22 (8148): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-20 04:37:22 (8148): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-20 04:37:22 (8148): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-20 04:37:22 (8148): Guest Log:  *** Starting ATLAS job. (PandaID=6608356005 taskID=44075483) ***
2025-04-20 05:42:37 (8148): Preference change detected
2025-04-20 05:42:37 (8148): Setting CPU throttle for VM. (100%)
2025-04-20 05:42:37 (8148): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 05:46:42 (8148): Preference change detected
2025-04-20 05:46:42 (8148): Setting CPU throttle for VM. (100%)
2025-04-20 05:46:43 (8148): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 06:07:03 (8148): VM state change detected. (old = 'running', new = 'paused')
2025-04-20 06:07:28 (8148): VM state change detected. (old = 'paused', new = 'running')
2025-04-20 06:17:07 (8148): Status Report: Elapsed Time: '6000.000000'
2025-04-20 06:17:07 (8148): Status Report: CPU Time: '40076.031250'
2025-04-20 06:25:42 (8148): Guest Log:  *** Job finished ***
2025-04-20 06:25:42 (8148): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:48,020 | INFO     | [data] queue_monitor thread has finished
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:52,373 | INFO     | job.realtimelogging is not enabled
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:53,375 | INFO     | [payload] run_realtimelog thread has finished
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:55,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358224172864)>', '<ExcThread(monitor, started 140356913985280)>']
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:56,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:24:56,235 | INFO     | [monitor] control thread has ended
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,311 | INFO     | all workflow threads have been joined
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,311 | INFO     | end of generic workflow (traces error code: 0)
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,311 | INFO     | traces error code: 0
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,425 [wrapper] ==== pilot stdout END ====
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,431 [wrapper] ==== wrapper stdout RESUME ====
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,436 [wrapper] pilotpid: 6003
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,440 [wrapper] Pilot exit status: 0
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,539 [wrapper] pandaids: 6608356005
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,569 [wrapper] cleanup supervisor_pilot  3490 6004
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,580 [wrapper] Test setup, not cleaning
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,584 [wrapper] apfmon messages muted
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,589 [wrapper] ==== wrapper stdout END ====
2025-04-20 06:25:42 (8148): Guest Log: 2025-04-20 04:25:00,593 [wrapper] ==== wrapper stderr END ====
2025-04-20 06:25:42 (8148): Guest Log:  *** Error codes and diagnostics ***
2025-04-20 06:25:42 (8148): Guest Log:     "exeErrorCode": 0,
2025-04-20 06:25:42 (8148): Guest Log:     "exeErrorDiag": "",
2025-04-20 06:25:42 (8148): Guest Log:     "pilotErrorCode": 0,
2025-04-20 06:25:42 (8148): Guest Log:     "pilotErrorDiag": "",
2025-04-20 06:25:42 (8148): Guest Log:  *** Listing of results directory ***
2025-04-20 06:25:42 (8148): Guest Log: total 198076
2025-04-20 06:25:42 (8148): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 19 23:04 pilot3.tar.gz
2025-04-20 06:25:42 (8148): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 19 23:23 runpilot2-wrapper.sh
2025-04-20 06:25:42 (8148): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 19 23:23 queuedata.json
2025-04-20 06:25:42 (8148): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 20 02:36 start_atlas.sh
2025-04-20 06:25:42 (8148): Guest Log: -rwxr-xr-x. 1 atlas atlas    508891 Apr 20 02:36 input.tar.gz
2025-04-20 06:25:42 (8148): Guest Log: -rwxr-xr-x. 1 atlas atlas      9453 Apr 20 02:36 init_data.xml
2025-04-20 06:25:42 (8148): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 20 02:36 EVNT.44075481._003488.pool.root.1 -> /data/./ATLAS.root_0
2025-04-20 06:25:42 (8148): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 20 02:37 pandaJob.out
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas       424 Apr 20 02:37 setup.sh.local
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas    991300 Apr 20 02:38 agis_schedconf.cvmfs.json
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 20 02:38 agis_ddmendpoints.agis.ALL.json
2025-04-20 06:25:42 (8148): Guest Log: drwx------. 4 atlas atlas      4096 Apr 20 02:38 pilot3
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas        95 Apr 20 04:24 pilot_heartbeat.json
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas 197243010 Apr 20 04:24 HITS.44075483._089529.pool.root.1
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 20 04:24 memory_monitor_summary.json
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas    327155 Apr 20 04:24 log.44075483._089529.job.log.tgz.1
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas      7713 Apr 20 04:24 heartbeat.json
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas      4801 Apr 20 04:25 pilotlog.txt
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas    566018 Apr 20 04:25 log.44075483._089529.job.log.1
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas       357 Apr 20 04:25 output.list
2025-04-20 06:25:42 (8148): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 20 04:25 runtime_log
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas    911360 Apr 20 04:25 result.tar.gz
2025-04-20 06:25:42 (8148): Guest Log: -rw-r--r--. 1 atlas atlas     10953 Apr 20 04:25 runtime_log.err
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas       658 Apr 20 04:25 QhTMDmlhWQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA7iLDmWh6GZm.diag
2025-04-20 06:25:42 (8148): Guest Log: Looking for outputfile HITS.44075483._089529.pool.root.1
2025-04-20 06:25:42 (8148): Guest Log: HITS file was successfully produced
2025-04-20 06:25:42 (8148): Guest Log: -rw-------. 1 atlas atlas 197243010 Apr 20 04:24 /home/atlas/RunAtlas/HITS.44075483._089529.pool.root.1
2025-04-20 06:25:43 (8148): Guest Log: Successfully finished the ATLAS job!
2025-04-20 06:25:43 (8148): Guest Log: Copying the results back to the shared directory!
2025-04-20 06:25:43 (8148): Guest Log:  *** Contents of shared directory: ***
2025-04-20 06:25:43 (8148): Guest Log: total 412384
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root 223575278 Apr 20 02:36 ATLAS.root_0
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root 197243010 Apr 20  2025 HITS.pool.root.1
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root      9453 Apr 20 02:36 init_data.xml
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root    508891 Apr 20 02:30 input.tar.gz
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root    911360 Apr 20  2025 result.tar.gz
2025-04-20 06:25:43 (8148): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 20 02:30 start_atlas.sh
2025-04-20 06:25:43 (8148): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-20 06:25:43 (8148): VM Completion File Detected.
2025-04-20 06:25:43 (8148): Powering off VM.
2025-04-20 06:25:43 (8148): Successfully stopped VM.
2025-04-20 06:25:43 (8148): Deregistering VM. (boinc_d1a04c678c166f5a, slot#26)
2025-04-20 06:25:43 (8148): Removing network bandwidth throttle group from VM.
2025-04-20 06:25:43 (8148): Removing VM from VirtualBox.
06:25:49 (8148): called boinc_finish(0)

</stderr_txt>
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