Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:29:29 (946886): wrapper (7.7.26015): starting
14:29:29 (946886): wrapper: running run_atlas (--nthreads 3)
[2025-04-20 14:29:29] Arguments: --nthreads 3
[2025-04-20 14:29:29] Threads: 3
[2025-04-20 14:29:29] Checking for CVMFS
[2025-04-20 14:29:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-20 14:29:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-20 14:29:29] Running cvmfs_config stat atlas.cern.ch
[2025-04-20 14:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-20 14:29:30] 2.9.2.0 1746900 12163 74424 145075 2 55 27878850 36864001 0 130560 0 8524177 99.991 2924685 9212 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-20 14:29:30] CVMFS is ok
[2025-04-20 14:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-20 14:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-20 14:29:30] Further information can be found at the LHC@home message board.
[2025-04-20 14:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-20 14:29:30] Checking for apptainer binary...
[2025-04-20 14:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-20 14:29:30] Running /usr/bin/apptainer --version
[2025-04-20 14:29:30] apptainer version 1.3.6-6.1
[2025-04-20 14:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-20 14:29:30] thA312
[2025-04-20 14:29:30] apptainer works
[2025-04-20 14:29:30] Set ATHENA_PROC_NUMBER=3
[2025-04-20 14:29:30] Set ATHENA_CORE_NUMBER=3
[2025-04-20 14:29:30] Starting ATLAS job with PandaID=6608328033
[2025-04-20 14:29:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 16:14:25]  *** The last 200 lines of the pilot log: ***
[2025-04-20 16:14:25] 2025-04-20 14:13:53,448 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6608328033/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,449 | INFO     | extracted standard info from prmon json
[2025-04-20 16:14:25] 2025-04-20 14:13:53,449 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 16:14:25] 2025-04-20 14:13:53,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 16:14:25] 2025-04-20 14:13:53,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 16:14:25] 2025-04-20 14:13:53,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | fitting pss+swap vs Time
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | sum of square deviations: 329031285.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | sum of deviations: 13566248414.999992
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | mean x: 1745155288.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | mean y: 2377773.3333333335
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | -- intersect: -71951905025.53438
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | intersect: -71951905025.53438
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | chi2: 3.566511616806796
[2025-04-20 16:14:25] 2025-04-20 14:13:53,450 | INFO     | sum of square deviations: 282974608.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | sum of deviations: 13858599882.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | mean x: 1745155136.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | mean y: 2378734.2680412373
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | -- intersect: -85466091149.93195
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | intersect: -85466091149.93195
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | chi2: 3.571021844060999
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | current chi2=3.571021844060999 (change=-0.12646046722373902 %)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | right removable region: 96
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | sum of square deviations: 282974608.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | sum of deviations: -7161074930.999995
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | mean x: 1745155441.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | mean y: 2445846.6391752576
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | -- intersect: 44166086420.5077
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | intersect: 44166086420.5077
[2025-04-20 16:14:25] 2025-04-20 14:13:53,451 | INFO     | chi2: 1.3351837625725202
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | current chi2=1.3351837625725202 (change=62.56331379153196 %)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | sum of square deviations: 241429643.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | sum of deviations: -21990395019.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | mean x: 1745155593.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | mean y: 2500312.2608695654
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | -- intersect: 158958378280.74374
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | intersect: 158958378280.74374
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | chi2: 0.19391892451872617
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | current chi2=0.19391892451872617 (change=85.47623705780397 %)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | sum of square deviations: 204163828.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | sum of deviations: -20281730790.00001
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | mean x: 1745155746.0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | mean y: 2493127.896551724
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | -- intersect: 173367086521.95084
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | intersect: 173367086521.95084
[2025-04-20 16:14:25] 2025-04-20 14:13:53,452 | INFO     | chi2: 0.173121720846018
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | current chi2=0.173121720846018 (change=10.72469008598479 %)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | left removable region: 30
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | sum of square deviations: 89127252.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | sum of deviations: -9322090912.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | mean x: 1745156020.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | mean y: 2448678.5
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | -- intersect: 182533634407.5531
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | intersect: 182533634407.5531
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | chi2: 0.1530823460828579
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | -- intersect: 182533634407.5531
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | current memory leak: -104.59 B/s (using 66 data points, chi2=0.15)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | ..............................
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . Timing measurements:
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . get job = 0 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . initial setup = 1 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . payload setup = 5 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . stage-in = 0 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . payload execution = 6214 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . stage-out = 0 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | . log creation = 0 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,453 | INFO     | ..............................
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | 
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | job summary report
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | --------------------------------------------------
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | PanDA job id: 6608328033
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | task id: 44075483
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | errors: (none)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 16:14:25] 2025-04-20 14:13:53,486 | INFO     | pilot state: finished 
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | transexitcode: 0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | exeerrorcode: 0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | exeerrordiag: 
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | exitcode: 0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | exitmsg: OK
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | cpuconsumptiontime: 16591 s
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | nevents: 400
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | neventsw: 0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | pid: 956983
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | pgrp: 956983
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | corecount: 3
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | event service: False
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | sizes: {0: 2425995, 1: 2426854, 5: 2427060, 11: 2427116, 6224: 2462945, 6227: 2462945, 6235: 2463243}
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | --------------------------------------------------
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | 
[2025-04-20 16:14:25] 2025-04-20 14:13:53,487 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,500 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 16:14:25] 2025-04-20 14:13:53,500 | INFO     | job 6608328033 has completed (purged errors)
[2025-04-20 16:14:25] 2025-04-20 14:13:53,500 | INFO     | overall cleanup function is called
[2025-04-20 16:14:25] 2025-04-20 14:13:54,506 | INFO     | --- collectZombieJob: --- 10, [956983]
[2025-04-20 16:14:25] 2025-04-20 14:13:54,506 | INFO     | zombie collector waiting for pid 956983
[2025-04-20 16:14:25] 2025-04-20 14:13:54,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 16:14:25] 2025-04-20 14:13:54,507 | INFO     | collected zombie processes
[2025-04-20 16:14:25] 2025-04-20 14:13:54,507 | INFO     | will attempt to kill all subprocesses of pid=956983
[2025-04-20 16:14:25] 2025-04-20 14:13:54,552 | INFO     | process IDs to be killed: [956983] (in reverse order)
[2025-04-20 16:14:25] 2025-04-20 14:13:54,581 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 16:14:25] 2025-04-20 14:13:54,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 16:14:25] 2025-04-20 14:13:54,582 | INFO     | did not find any defunct processes belonging to 956983
[2025-04-20 16:14:25] 2025-04-20 14:13:54,583 | INFO     | did not find any defunct processes belonging to 956983
[2025-04-20 16:14:25] 2025-04-20 14:13:54,583 | INFO     | ready for new job
[2025-04-20 16:14:25] 2025-04-20 14:13:54,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 16:14:25] 2025-04-20 14:13:54,584 | INFO     | **************************************
[2025-04-20 16:14:25] 2025-04-20 14:13:54,584 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 16:14:25] 2025-04-20 14:13:54,584 | INFO     | **************************************
[2025-04-20 16:14:25] 2025-04-20 14:13:54,584 | INFO     | 
[2025-04-20 16:14:25] 2025-04-20 14:13:54,585 | INFO     | architecture information:
[2025-04-20 16:14:25] 2025-04-20 14:13:54,585 | INFO     | executing command: cat /etc/os-release
[2025-04-20 16:14:25] 2025-04-20 14:13:54,594 | INFO     | cat /etc/os-release:
[2025-04-20 16:14:25] NAME="CentOS Linux"
[2025-04-20 16:14:25] VERSION="7 (Core)"
[2025-04-20 16:14:25] ID="centos"
[2025-04-20 16:14:25] ID_LIKE="rhel fedora"
[2025-04-20 16:14:25] VERSION_ID="7"
[2025-04-20 16:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 16:14:25] ANSI_COLOR="0;31"
[2025-04-20 16:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 16:14:25] HOME_URL="https://www.centos.org/"
[2025-04-20 16:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 16:14:25] 
[2025-04-20 16:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 16:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 16:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 16:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 16:14:25] 
[2025-04-20 16:14:25] 2025-04-20 14:13:54,594 | INFO     | **************************************
[2025-04-20 16:14:25] 2025-04-20 14:13:55,097 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-20 16:14:25] 2025-04-20 14:13:55,110 | INFO     | sufficient remaining disk space (829274718208 B)
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | INFO     | update_server=False
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 16:14:25] 2025-04-20 14:13:55,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 16:14:25] 2025-04-20 14:13:55,117 | INFO     | all data control threads have been joined
[2025-04-20 16:14:25] 2025-04-20 14:13:55,380 | INFO     | all payload control threads have been joined
[2025-04-20 16:14:25] 2025-04-20 14:13:55,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 16:14:25] 2025-04-20 14:13:55,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 16:14:25] 2025-04-20 14:13:55,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 16:14:25] 2025-04-20 14:13:55,815 | INFO     | aborting loop
[2025-04-20 16:14:25] 2025-04-20 14:13:55,960 | INFO     | all job control threads have been joined
[2025-04-20 16:14:25] 2025-04-20 14:13:56,116 | INFO     | [job] retrieve thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,117 | INFO     | [job] queue monitor thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,122 | INFO     | [data] control thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,218 | INFO     | [payload] validate_post thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,370 | INFO     | [payload] failed_post thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,386 | INFO     | [payload] control thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,814 | INFO     | [data] copytool_in thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,820 | INFO     | [job] job monitor thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,858 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,868 | INFO     | [job] validate thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,883 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,940 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:56,966 | INFO     | [job] control thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:57,757 | INFO     | [data] copytool_out thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:59,617 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 16:14:25] 2025-04-20 14:13:59,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782682744640)>', '<ExcThread(monitor, started 139782059456256)>']
[2025-04-20 16:14:25] 2025-04-20 14:14:00,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 16:14:25] 2025-04-20 14:14:00,139 | INFO     | [monitor] control thread has ended
[2025-04-20 16:14:25] 2025-04-20 14:14:04,802 | INFO     | all workflow threads have been joined
[2025-04-20 16:14:25] 2025-04-20 14:14:04,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 16:14:25] 2025-04-20 14:14:04,803 | INFO     | traces error code: 0
[2025-04-20 16:14:25] 2025-04-20 14:14:04,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 16:14:25] 2025-04-20 14:14:04,853 [wrapper] ==== pilot stdout END ====
[2025-04-20 16:14:25] 2025-04-20 14:14:04,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 16:14:25] 2025-04-20 14:14:04,859 [wrapper] pilotpid: 950542
[2025-04-20 16:14:25] 2025-04-20 14:14:04,862 [wrapper] Pilot exit status: 0
[2025-04-20 16:14:25] 2025-04-20 14:14:04,870 [wrapper] pandaids: 6608328033
[2025-04-20 16:14:25] 2025-04-20 14:14:04,888 [wrapper] cleanup supervisor_pilot  969276 950543
[2025-04-20 16:14:25] 2025-04-20 14:14:04,891 [wrapper] Test setup, not cleaning
[2025-04-20 16:14:25] 2025-04-20 14:14:04,894 [wrapper] apfmon messages muted
[2025-04-20 16:14:25] 2025-04-20 14:14:04,896 [wrapper] ==== wrapper stdout END ====
[2025-04-20 16:14:25] 2025-04-20 14:14:04,899 [wrapper] ==== wrapper stderr END ====
[2025-04-20 16:14:25]  *** Error codes and diagnostics ***
[2025-04-20 16:14:25]     "exeErrorCode": 0,
[2025-04-20 16:14:25]     "exeErrorDiag": "",
[2025-04-20 16:14:25]     "pilotErrorCode": 0,
[2025-04-20 16:14:25]     "pilotErrorDiag": "",
[2025-04-20 16:14:25]  *** Listing of results directory ***
[2025-04-20 16:14:25] total 422904
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc    495897 Apr 20 00:19 pilot3.tar.gz
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc      5111 Apr 20 00:25 queuedata.json
[2025-04-20 16:14:25] -rwx------ 1 boinc boinc     37140 Apr 20 00:26 runpilot2-wrapper.sh
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc       100 Apr 20 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 16:14:25] -rwxr-xr-x 1 boinc boinc      7986 Apr 20 14:29 run_atlas
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc       105 Apr 20 14:29 job.xml
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc 225857119 Apr 20 14:29 EVNT.44075481._003468.pool.root.1
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc      6679 Apr 20 14:29 init_data.xml
[2025-04-20 16:14:25] drwxrwx--x 2 boinc boinc      4096 Apr 20 14:29 shared
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc    508899 Apr 20 14:29 input.tar.gz
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc     17569 Apr 20 14:29 start_atlas.sh
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc         0 Apr 20 14:29 boinc_lockfile
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc      2578 Apr 20 14:29 pandaJob.out
[2025-04-20 16:14:25] -rw------- 1 boinc boinc       424 Apr 20 14:29 setup.sh.local
[2025-04-20 16:14:25] -rw------- 1 boinc boinc    991292 Apr 20 14:29 agis_schedconf.cvmfs.json
[2025-04-20 16:14:25] -rw------- 1 boinc boinc   1618536 Apr 20 14:29 agis_ddmendpoints.agis.ALL.json
[2025-04-20 16:14:25] drwx------ 4 boinc boinc      4096 Apr 20 14:29 pilot3
[2025-04-20 16:14:25] -rw------- 1 boinc boinc        95 Apr 20 16:13 pilot_heartbeat.json
[2025-04-20 16:14:25] -rw------- 1 boinc boinc 201628500 Apr 20 16:13 HITS.44075483._089016.pool.root.1
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc       530 Apr 20 16:13 boinc_task_state.xml
[2025-04-20 16:14:25] -rw------- 1 boinc boinc      1018 Apr 20 16:13 memory_monitor_summary.json
[2025-04-20 16:14:25] -rw------- 1 boinc boinc    250644 Apr 20 16:13 log.44075483._089016.job.log.tgz.1
[2025-04-20 16:14:25] -rw------- 1 boinc boinc      7660 Apr 20 16:13 heartbeat.json
[2025-04-20 16:14:25] -rw------- 1 boinc boinc      4480 Apr 20 16:14 pilotlog.txt
[2025-04-20 16:14:25] -rw------- 1 boinc boinc    596730 Apr 20 16:14 log.44075483._089016.job.log.1
[2025-04-20 16:14:25] -rw------- 1 boinc boinc       357 Apr 20 16:14 output.list
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc       620 Apr 20 16:14 runtime_log
[2025-04-20 16:14:25] -rw------- 1 boinc boinc    870400 Apr 20 16:14 result.tar.gz
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc     11099 Apr 20 16:14 runtime_log.err
[2025-04-20 16:14:25] -rw------- 1 boinc boinc       659 Apr 20 16:14 6MiNDm5oVQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmC2iLDm0McWim.diag
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc      8192 Apr 20 16:14 boinc_mmap_file
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc        27 Apr 20 16:14 wrapper_checkpoint.txt
[2025-04-20 16:14:25] -rw-r--r-- 1 boinc boinc     20798 Apr 20 16:14 stderr.txt
[2025-04-20 16:14:25] HITS file was successfully produced:
[2025-04-20 16:14:25] -rw------- 1 boinc boinc 201628500 Apr 20 16:13 shared/HITS.pool.root.1
[2025-04-20 16:14:25]  *** Contents of shared directory: ***
[2025-04-20 16:14:25] total 418848
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc 225857119 Apr 20 14:29 ATLAS.root_0
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc    508899 Apr 20 14:29 input.tar.gz
[2025-04-20 16:14:25] -rw-r--r-- 2 boinc boinc     17569 Apr 20 14:29 start_atlas.sh
[2025-04-20 16:14:25] -rw------- 1 boinc boinc 201628500 Apr 20 16:13 HITS.pool.root.1
[2025-04-20 16:14:25] -rw------- 1 boinc boinc    870400 Apr 20 16:14 result.tar.gz
16:14:27 (946886): run_atlas exited; CPU time 16629.274527
16:14:27 (946886): called boinc_finish(0)

</stderr_txt>
]]>

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