Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:13:07 (319155): wrapper (7.7.26015): starting
03:13:07 (319155): wrapper: running run_atlas (--nthreads 12)
[2025-04-20 03:13:07] Arguments: --nthreads 12
[2025-04-20 03:13:07] Threads: 12
[2025-04-20 03:13:07] Checking for CVMFS
[2025-04-20 03:13:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-20 03:13:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-20 03:13:07] Running cvmfs_config stat atlas.cern.ch
[2025-04-20 03:13:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-20 03:13:08] 2.12.7.0 3563 491 61704 145056 2 189 3629055 4096001 0 130560 0 725762 99.982 245002 1792 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-20 03:13:08] CVMFS is ok
[2025-04-20 03:13:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-20 03:13:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-20 03:13:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-20 03:13:08] Further information can be found at the LHC@home message board.
[2025-04-20 03:13:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-20 03:13:08] Checking for apptainer binary...
[2025-04-20 03:13:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-20 03:13:08] Running /usr/bin/apptainer --version
[2025-04-20 03:13:08] apptainer version 1.3.6
[2025-04-20 03:13:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-20 03:13:08] subzero
[2025-04-20 03:13:08] apptainer works
[2025-04-20 03:13:08] Set ATHENA_PROC_NUMBER=12
[2025-04-20 03:13:08] Set ATHENA_CORE_NUMBER=12
[2025-04-20 03:13:08] Starting ATLAS job with PandaID=6608227639
[2025-04-20 03:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/david/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 04:02:14]  *** The last 200 lines of the pilot log: ***
[2025-04-20 04:02:14]  is_tar=False
[2025-04-20 04:02:14]  lfn=log.44075483._088627.job.log.tgz.1
[2025-04-20 04:02:14]  mtime=0
[2025-04-20 04:02:14]  protocol_id=None
[2025-04-20 04:02:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-20 04:02:14]  replicas=None
[2025-04-20 04:02:14]  scope=mc23_13p6TeV
[2025-04-20 04:02:14]  status=None
[2025-04-20 04:02:14]  status_code=0
[2025-04-20 04:02:14]  storage_token=
[2025-04-20 04:02:14]  surl=/home/david/boinc/slots/0/PanDA_Pilot-6608227639/log.44075483._088627.job.log.tgz.1
[2025-04-20 04:02:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/75/log.44075483._088627.job.log.tgz.1
[2025-04-20 04:02:14]  workdir=None
[2025-04-20 04:02:14] ]
[2025-04-20 04:02:14] 2025-04-20 02:01:54,766 | INFO     | transferring file log.44075483._088627.job.log.tgz.1 from /home/david/boinc/slots/0/PanDA_Pilot-6608227639/log.44075483._088627.job.log.tgz.1 to /home/david/boinc/
[2025-04-20 04:02:14] 2025-04-20 02:01:54,766 | INFO     | executing command: /usr/bin/env mv /home/david/boinc/slots/0/PanDA_Pilot-6608227639/log.44075483._088627.job.log.tgz.1 /home/david/boinc/slots/0/log.44075483._0886
[2025-04-20 04:02:14] 2025-04-20 02:01:54,775 | INFO     | adding to output.list: log.44075483._088627.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/75/log.44075483._088627.job.log.tg
[2025-04-20 04:02:14] 2025-04-20 02:01:54,775 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-20 04:02:14] 2025-04-20 02:01:54,775 | INFO     | summary of transferred files:
[2025-04-20 04:02:14] 2025-04-20 02:01:54,775 | INFO     |  -- lfn=log.44075483._088627.job.log.tgz.1, status_code=0, status=transferred
[2025-04-20 04:02:14] 2025-04-20 02:01:54,775 | INFO     | stage-out finished correctly
[2025-04-20 04:02:14] 2025-04-20 02:01:57,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-20 04:02:14] 2025-04-20 02:01:57,538 | WARNING  | process 329414 can no longer be monitored (due to stat problems) - aborting
[2025-04-20 04:02:14] 2025-04-20 02:01:57,538 | INFO     | using path: /home/david/boinc/slots/0/PanDA_Pilot-6608227639/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 04:02:14] 2025-04-20 02:01:57,617 | INFO     | number of running child processes to parent process 329414: 1
[2025-04-20 04:02:14] 2025-04-20 02:01:57,617 | INFO     | maximum number of monitored processes: 6
[2025-04-20 04:02:14] 2025-04-20 02:01:58,699 | INFO     | job 6608227639 has state=finished
[2025-04-20 04:02:14] 2025-04-20 02:01:58,699 | INFO     | preparing for final server update for job 6608227639 in state='finished'
[2025-04-20 04:02:14] 2025-04-20 02:01:58,699 | INFO     | this job has now completed (state=finished)
[2025-04-20 04:02:14] 2025-04-20 02:01:58,700 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-20 04:02:14] 2025-04-20 02:01:58,700 | INFO     | log transfer has been attempted: DONE
[2025-04-20 04:02:14] 2025-04-20 02:01:58,700 | INFO     | job 6608227639 has finished - writing final server update
[2025-04-20 04:02:14] 2025-04-20 02:01:58,700 | INFO     | total number of processed events: 400 (read)
[2025-04-20 04:02:14] 2025-04-20 02:01:58,701 | INFO     | executing command: lscpu
[2025-04-20 04:02:14] 2025-04-20 02:01:58,715 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-20 04:02:14] 2025-04-20 02:01:59,670 | INFO     | PID=322847 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-20 04:02:14] 2025-04-20 02:02:00,119 | INFO     | monitor loop #224: job 0:6608227639 is in state 'finished'
[2025-04-20 04:02:14] 2025-04-20 02:02:00,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | INFO     | using path: /home/david/boinc/slots/0/PanDA_Pilot-6608227639/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | INFO     | extracted standard info from prmon json
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 04:02:14] 2025-04-20 02:02:00,523 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | fitting pss+swap vs Time
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | sum of square deviations: 21358540.0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | sum of deviations: 11246062601.999998
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | mean x: 1745113136.0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | mean y: 2627354.2682926827
[2025-04-20 04:02:14] 2025-04-20 02:02:00,524 | INFO     | -- intersect: -918864091767.3821
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | intersect: -918864091767.3821
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | chi2: 1.675025507242447
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | -- intersect: -918864091767.3821
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | current memory leak: 526.54 B/s (using 41 data points, chi2=1.68)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | ..............................
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . Timing measurements:
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . get job = 0 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . initial setup = 1 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . payload setup = 2 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . stage-in = 0 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . payload execution = 2901 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . stage-out = 0 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | . log creation = 0 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,525 | INFO     | ..............................
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | 
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | job summary report
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | --------------------------------------------------
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | PanDA job id: 6608227639
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | task id: 44075483
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | errors: (none)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | pilot state: finished 
[2025-04-20 04:02:14] 2025-04-20 02:02:00,566 | INFO     | transexitcode: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | exeerrorcode: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | exeerrordiag: 
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | exitcode: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | exitmsg: OK
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | cpuconsumptiontime: 25649 s
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | nevents: 400
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | neventsw: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | pid: 329414
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | pgrp: 329414
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | corecount: 12
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | event service: False
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | sizes: {0: 2426776, 2: 2426982, 11: 2427010, 2907: 2452368, 2909: 2461315, 2911: 2461371, 2914: 2461669}
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | --------------------------------------------------
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | 
[2025-04-20 04:02:14] 2025-04-20 02:02:00,567 | INFO     | executing command: ls -lF /home/david/boinc/slots/0
[2025-04-20 04:02:14] 2025-04-20 02:02:00,577 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 04:02:14] 2025-04-20 02:02:00,579 | INFO     | job 6608227639 has completed (purged errors)
[2025-04-20 04:02:14] 2025-04-20 02:02:00,579 | INFO     | overall cleanup function is called
[2025-04-20 04:02:14] 2025-04-20 02:02:01,586 | INFO     | --- collectZombieJob: --- 10, [329414]
[2025-04-20 04:02:14] 2025-04-20 02:02:01,586 | INFO     | zombie collector waiting for pid 329414
[2025-04-20 04:02:14] 2025-04-20 02:02:01,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 04:02:14] 2025-04-20 02:02:01,586 | INFO     | collected zombie processes
[2025-04-20 04:02:14] 2025-04-20 02:02:01,586 | INFO     | will attempt to kill all subprocesses of pid=329414
[2025-04-20 04:02:14] 2025-04-20 02:02:01,664 | INFO     | process IDs to be killed: [329414] (in reverse order)
[2025-04-20 04:02:14] 2025-04-20 02:02:01,689 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 04:02:14] 2025-04-20 02:02:01,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 04:02:14] 2025-04-20 02:02:01,691 | INFO     | did not find any defunct processes belonging to 329414
[2025-04-20 04:02:14] 2025-04-20 02:02:01,693 | INFO     | did not find any defunct processes belonging to 329414
[2025-04-20 04:02:14] 2025-04-20 02:02:01,693 | INFO     | ready for new job
[2025-04-20 04:02:14] 2025-04-20 02:02:01,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 04:02:14] 2025-04-20 02:02:01,694 | INFO     | **************************************
[2025-04-20 04:02:14] 2025-04-20 02:02:01,694 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 04:02:14] 2025-04-20 02:02:01,694 | INFO     | **************************************
[2025-04-20 04:02:14] 2025-04-20 02:02:01,694 | INFO     | 
[2025-04-20 04:02:14] 2025-04-20 02:02:01,694 | INFO     | architecture information:
[2025-04-20 04:02:14] 2025-04-20 02:02:01,695 | INFO     | executing command: cat /etc/os-release
[2025-04-20 04:02:14] 2025-04-20 02:02:01,701 | INFO     | cat /etc/os-release:
[2025-04-20 04:02:14] NAME="CentOS Linux"
[2025-04-20 04:02:14] VERSION="7 (Core)"
[2025-04-20 04:02:14] ID="centos"
[2025-04-20 04:02:14] ID_LIKE="rhel fedora"
[2025-04-20 04:02:14] VERSION_ID="7"
[2025-04-20 04:02:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 04:02:14] ANSI_COLOR="0;31"
[2025-04-20 04:02:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 04:02:14] HOME_URL="https://www.centos.org/"
[2025-04-20 04:02:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 04:02:14] 
[2025-04-20 04:02:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 04:02:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 04:02:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 04:02:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 04:02:14] 
[2025-04-20 04:02:14] 2025-04-20 02:02:01,701 | INFO     | **************************************
[2025-04-20 04:02:14] 2025-04-20 02:02:02,204 | INFO     | executing command: df -mP /home/david/boinc/slots/0
[2025-04-20 04:02:14] 2025-04-20 02:02:02,211 | INFO     | sufficient remaining disk space (237596835840 B)
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | INFO     | update_server=False
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 04:02:14] 2025-04-20 02:02:02,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 04:02:14] 2025-04-20 02:02:02,473 | INFO     | all data control threads have been joined
[2025-04-20 04:02:14] 2025-04-20 02:02:02,618 | INFO     | all job control threads have been joined
[2025-04-20 04:02:14] 2025-04-20 02:02:02,622 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-20 04:02:14] 2025-04-20 02:02:02,622 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-20 04:02:14] 2025-04-20 02:02:02,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 04:02:14] 2025-04-20 02:02:02,622 | INFO     | will abort loop
[2025-04-20 04:02:14] 2025-04-20 02:02:02,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 04:02:14] 2025-04-20 02:02:03,154 | INFO     | all payload control threads have been joined
[2025-04-20 04:02:14] 2025-04-20 02:02:03,217 | INFO     | [job] retrieve thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,217 | INFO     | [job] queue monitor thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,478 | INFO     | [data] control thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 04:02:14] 2025-04-20 02:02:03,531 | INFO     | [payload] failed_post thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,549 | INFO     | [job] validate thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,622 | INFO     | [job] control thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,627 | INFO     | [job] job monitor thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,673 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:03,717 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:04,034 | INFO     | [payload] validate_post thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:04,159 | INFO     | [payload] control thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:04,187 | INFO     | [data] copytool_in thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:04,446 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:04,826 | INFO     | [data] copytool_out thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:07,494 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 04:02:14] 2025-04-20 02:02:09,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995467581248)>', '<ExcThread(monitor, started 139994962310912)>']
[2025-04-20 04:02:14] 2025-04-20 02:02:09,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 04:02:14] 2025-04-20 02:02:09,237 | INFO     | [monitor] control thread has ended
[2025-04-20 04:02:14] 2025-04-20 02:02:14,128 | INFO     | all workflow threads have been joined
[2025-04-20 04:02:14] 2025-04-20 02:02:14,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 04:02:14] 2025-04-20 02:02:14,128 | INFO     | traces error code: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:14,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 04:02:14] 2025-04-20 02:02:14,190 [wrapper] ==== pilot stdout END ====
[2025-04-20 04:02:14] 2025-04-20 02:02:14,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 04:02:14] 2025-04-20 02:02:14,193 [wrapper] pilotpid: 322847
[2025-04-20 04:02:14] 2025-04-20 02:02:14,194 [wrapper] Pilot exit status: 0
[2025-04-20 04:02:14] 2025-04-20 02:02:14,200 [wrapper] pandaids: 6608227639
[2025-04-20 04:02:14] 2025-04-20 02:02:14,218 [wrapper] cleanup supervisor_pilot  342520 322848
[2025-04-20 04:02:14] 2025-04-20 02:02:14,219 [wrapper] Test setup, not cleaning
[2025-04-20 04:02:14] 2025-04-20 02:02:14,221 [wrapper] apfmon messages muted
[2025-04-20 04:02:14] 2025-04-20 02:02:14,222 [wrapper] ==== wrapper stdout END ====
[2025-04-20 04:02:14] 2025-04-20 02:02:14,224 [wrapper] ==== wrapper stderr END ====
[2025-04-20 04:02:14]  *** Error codes and diagnostics ***
[2025-04-20 04:02:14]     "exeErrorCode": 0,
[2025-04-20 04:02:14]     "exeErrorDiag": "",
[2025-04-20 04:02:14]     "pilotErrorCode": 0,
[2025-04-20 04:02:14]     "pilotErrorDiag": "",
[2025-04-20 04:02:14]  *** Listing of results directory ***
[2025-04-20 04:02:14] total 422216
[2025-04-20 04:02:14] -rw-r--r-- 1 david david    495897 Apr 19 23:39 pilot3.tar.gz
[2025-04-20 04:02:14] -rw-r--r-- 1 david david      5111 Apr 19 23:46 queuedata.json
[2025-04-20 04:02:14] -rwx------ 1 david david     37140 Apr 19 23:47 runpilot2-wrapper.sh
[2025-04-20 04:02:14] -rw-r--r-- 1 david david       100 Apr 20 03:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 04:02:14] -rwxr-xr-x 1 david david      7986 Apr 20 03:13 run_atlas
[2025-04-20 04:02:14] -rw-r--r-- 1 david david       105 Apr 20 03:13 job.xml
[2025-04-20 04:02:14] -rw-r--r-- 2 david david     17569 Apr 20 03:13 start_atlas.sh
[2025-04-20 04:02:14] drwxrwx--x 1 david david        76 Apr 20 03:13 shared
[2025-04-20 04:02:14] -rw-r--r-- 2 david david    508894 Apr 20 03:13 input.tar.gz
[2025-04-20 04:02:14] -rw-r--r-- 1 david david      7526 Apr 20 03:13 init_data.xml
[2025-04-20 04:02:14] -rw-r--r-- 2 david david 223578796 Apr 20 03:13 EVNT.44075481._003455.pool.root.1
[2025-04-20 04:02:14] -rw-r--r-- 1 david david         0 Apr 20 03:13 boinc_setup_complete
[2025-04-20 04:02:14] -rw-r--r-- 1 david david         0 Apr 20 03:13 boinc_lockfile
[2025-04-20 04:02:14] -rw-r--r-- 1 david david      2578 Apr 20 03:13 pandaJob.out
[2025-04-20 04:02:14] -rw------- 1 david david       424 Apr 20 03:13 setup.sh.local
[2025-04-20 04:02:14] -rw------- 1 david david    991300 Apr 20 03:13 agis_schedconf.cvmfs.json
[2025-04-20 04:02:14] -rw------- 1 david david   1618536 Apr 20 03:13 agis_ddmendpoints.agis.ALL.json
[2025-04-20 04:02:14] drwx------ 1 david david       368 Apr 20 03:13 pilot3
[2025-04-20 04:02:14] -rw-r--r-- 1 david david       529 Apr 20 04:01 boinc_task_state.xml
[2025-04-20 04:02:14] -rw------- 1 david david 203625645 Apr 20 04:01 HITS.44075483._088627.pool.root.1
[2025-04-20 04:02:14] -rw------- 1 david david        95 Apr 20 04:01 pilot_heartbeat.json
[2025-04-20 04:02:14] -rw------- 1 david david      1012 Apr 20 04:01 memory_monitor_summary.json
[2025-04-20 04:02:14] -rw-r--r-- 1 david david      8192 Apr 20 04:01 boinc_mmap_file
[2025-04-20 04:02:14] -rw-r--r-- 1 david david        27 Apr 20 04:01 wrapper_checkpoint.txt
[2025-04-20 04:02:14] -rw------- 1 david david    336636 Apr 20 04:01 log.44075483._088627.job.log.tgz.1
[2025-04-20 04:02:14] -rw------- 1 david david      7650 Apr 20 04:02 heartbeat.json
[2025-04-20 04:02:14] -rw------- 1 david david      4666 Apr 20 04:02 pilotlog.txt
[2025-04-20 04:02:14] -rw------- 1 david david    308693 Apr 20 04:02 log.44075483._088627.job.log.1
[2025-04-20 04:02:14] -rw------- 1 david david       357 Apr 20 04:02 output.list
[2025-04-20 04:02:14] -rw-r--r-- 1 david david       620 Apr 20 04:02 runtime_log
[2025-04-20 04:02:14] -rw------- 1 david david    665600 Apr 20 04:02 result.tar.gz
[2025-04-20 04:02:14] -rw-r--r-- 1 david david     11014 Apr 20 04:02 runtime_log.err
[2025-04-20 04:02:14] -rw------- 1 david david       638 Apr 20 04:02 6KbKDmIDVQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmKyiLDm7jNqNm.diag
[2025-04-20 04:02:14] -rw-r--r-- 1 david david     21658 Apr 20 04:02 stderr.txt
[2025-04-20 04:02:14] HITS file was successfully produced:
[2025-04-20 04:02:14] -rw------- 1 david david 203625645 Apr 20 04:01 shared/HITS.pool.root.1
[2025-04-20 04:02:14]  *** Contents of shared directory: ***
[2025-04-20 04:02:14] total 418368
[2025-04-20 04:02:14] -rw-r--r-- 2 david david     17569 Apr 20 03:13 start_atlas.sh
[2025-04-20 04:02:14] -rw-r--r-- 2 david david    508894 Apr 20 03:13 input.tar.gz
[2025-04-20 04:02:14] -rw-r--r-- 2 david david 223578796 Apr 20 03:13 ATLAS.root_0
[2025-04-20 04:02:14] -rw------- 1 david david 203625645 Apr 20 04:01 HITS.pool.root.1
[2025-04-20 04:02:14] -rw------- 1 david david    665600 Apr 20 04:02 result.tar.gz
04:02:15 (319155): run_atlas exited; CPU time 25649.504591
04:02:15 (319155): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN