Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-20 02:43:07 (14024): Detected: vboxwrapper 26206
2025-04-20 02:43:07 (14024): Detected: BOINC client v8.0.2
2025-04-20 02:43:08 (14024): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-20 02:43:09 (14024): Successfully copied 'init_data.xml' to the shared directory.
2025-04-20 02:43:09 (14024): Create VM. (boinc_a2da332ad55773bc, slot#0)
2025-04-20 02:43:10 (14024): Setting Memory Size for VM. (4200MB)
2025-04-20 02:43:10 (14024): Setting CPU Count for VM. (2)
2025-04-20 02:43:10 (14024): Setting Chipset Options for VM.
2025-04-20 02:43:11 (14024): Setting Graphics Controller Options for VM.
2025-04-20 02:43:11 (14024): Setting Boot Options for VM.
2025-04-20 02:43:11 (14024): Setting Network Configuration for NAT.
2025-04-20 02:43:11 (14024): Enabling VM Network Access.
2025-04-20 02:43:12 (14024): Disabling USB Support for VM.
2025-04-20 02:43:12 (14024): Disabling COM Port Support for VM.
2025-04-20 02:43:12 (14024): Disabling LPT Port Support for VM.
2025-04-20 02:43:13 (14024): Disabling Audio Support for VM.
2025-04-20 02:43:13 (14024): Disabling Clipboard Support for VM.
2025-04-20 02:43:13 (14024): Disabling Drag and Drop Support for VM.
2025-04-20 02:43:13 (14024): Adding storage controller(s) to VM.
2025-04-20 02:43:14 (14024): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-20 02:43:17 (14024): Adding VirtualBox Guest Additions to VM.
2025-04-20 02:43:17 (14024): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-20 02:43:17 (14024): forwarding host port 55750 to guest port 80
2025-04-20 02:43:17 (14024): Enabling remote desktop for VM.
2025-04-20 02:43:18 (14024): Required extension pack not installed, remote desktop not enabled.
2025-04-20 02:43:18 (14024): Enabling shared directory for VM.
2025-04-20 02:43:18 (14024): Starting VM using VBoxManage interface. (boinc_a2da332ad55773bc, slot#0)
2025-04-20 02:43:24 (14024): Successfully started VM. (PID = '18216')
2025-04-20 02:43:24 (14024): Reporting VM Process ID to BOINC.
2025-04-20 02:43:24 (14024): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-20 02:43:24 (14024): Guest Log: CPUID EDX: 0x178bfbff
2025-04-20 02:43:24 (14024): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-20 02:43:24 (14024): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-20 02:43:24 (14024): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-20 02:43:24 (14024): Detected: Web Application Enabled (http://localhost:55750)
2025-04-20 02:43:25 (14024): VM state change detected. (old = 'running', new = 'paused')
2025-04-20 02:43:33 (14024): Preference change detected
2025-04-20 02:43:33 (14024): Setting CPU throttle for VM. (75%)
2025-04-20 02:43:33 (14024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-20 02:43:34 (14024): VM state change detected. (old = 'paused', new = 'running')
2025-04-20 02:43:35 (14024): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-20 02:43:35 (14024): Guest Log: BIOS: Booting from Hard Disk...
2025-04-20 02:43:38 (14024): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-20 02:43:38 (14024): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-20 02:43:38 (14024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-20 02:43:44 (14024): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-20 02:43:44 (14024): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-20 02:43:51 (14024): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000106 main     Log opened 2025-04-20T02:43:40.647444000Z
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000176 main     OS Product: Linux
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000192 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000206 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000220 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000221 main     Process ID: 1257
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.000221 main     Package type: LINUX_64BITS_GENERIC
2025-04-20 02:43:51 (14024): Guest Log: 00:00:00.002387 main     5.2.32 r132073 started. Verbose level = 0
2025-04-20 02:43:51 (14024): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-20 02:43:51 (14024): Guest Log: [INFO] Mounting shared directory
2025-04-20 02:43:51 (14024): Guest Log: [INFO] Checking for init_data.xml
2025-04-20 02:44:01 (14024): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-20 02:44:01 (14024): Guest Log: [INFO] Detected branch: prod
2025-04-20 02:44:01 (14024): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-20 02:44:01 (14024): Guest Log: Copying input files
2025-04-20 02:44:01 (14024): Guest Log: 00:00:10.004993 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 179 786 055 000ns (GuestNow=1 745 109 840 866 120 000 ns GuestLast=1 745 117 020 652 175 000 ns fSetTimeLastLoop=true )
2025-04-20 02:44:02 (14024): Guest Log: Copied input files into RunAtlas.
2025-04-20 02:44:02 (14024): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-20 02:44:02 (14024): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-20 02:44:02 (14024): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-20 02:44:02 (14024): Guest Log: Further information can be found at the LHC@home message board.
2025-04-20 02:44:11 (14024): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-20 02:44:12 (14024): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-20 02:44:12 (14024): Guest Log: 2.6.3.0 1531 0 32200 145056 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-20 02:44:12 (14024): Guest Log: copied the webapp to /var/www
2025-04-20 02:44:12 (14024): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-20 02:44:12 (14024): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-20 02:44:12 (14024): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-20 02:44:12 (14024): Guest Log:  *** Starting ATLAS job. (PandaID=6608146130 taskID=44075483) ***
2025-04-20 04:23:37 (14024): Status Report: Elapsed Time: '6000.000000'
2025-04-20 04:23:37 (14024): Status Report: CPU Time: '7820.718750'
2025-04-20 06:03:43 (14024): Status Report: Elapsed Time: '12000.000000'
2025-04-20 06:03:43 (14024): Status Report: CPU Time: '16858.125000'
2025-04-20 07:14:17 (14024): Guest Log:  *** Job finished ***
2025-04-20 07:14:17 (14024): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:01,964 | INFO     | [payload] run_realtimelog thread has finished
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:02,159 | INFO     | [data] copytool_out thread has finished
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:04,449 | INFO     | [data] queue_monitor thread has finished
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:06,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201293678400)>', '<ExcThread(monitor, started 140200407721728)>']
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:07,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:07,442 | INFO     | [monitor] control thread has ended
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,784 | INFO     | all workflow threads have been joined
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,784 | INFO     | end of generic workflow (traces error code: 0)
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,784 | INFO     | traces error code: 0
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,872 [wrapper] ==== pilot stdout END ====
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,876 [wrapper] ==== wrapper stdout RESUME ====
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,879 [wrapper] pilotpid: 5835
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,882 [wrapper] Pilot exit status: 0
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:11,995 [wrapper] pandaids: 6608146130
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:12,015 [wrapper] cleanup supervisor_pilot 15248 5836
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:12,034 [wrapper] Test setup, not cleaning
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:12,040 [wrapper] apfmon messages muted
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:12,043 [wrapper] ==== wrapper stdout END ====
2025-04-20 07:14:17 (14024): Guest Log: 2025-04-20 05:14:12,046 [wrapper] ==== wrapper stderr END ====
2025-04-20 07:14:17 (14024): Guest Log:  *** Error codes and diagnostics ***
2025-04-20 07:14:17 (14024): Guest Log:     "exeErrorCode": 0,
2025-04-20 07:14:17 (14024): Guest Log:     "exeErrorDiag": "",
2025-04-20 07:14:17 (14024): Guest Log:     "pilotErrorCode": 0,
2025-04-20 07:14:17 (14024): Guest Log:     "pilotErrorDiag": "",
2025-04-20 07:14:17 (14024): Guest Log:  *** Listing of results directory ***
2025-04-20 07:14:17 (14024): Guest Log: total 198812
2025-04-20 07:14:17 (14024): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 19 21:05 pilot3.tar.gz
2025-04-20 07:14:17 (14024): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 19 21:16 runpilot2-wrapper.sh
2025-04-20 07:14:17 (14024): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 19 21:16 queuedata.json
2025-04-20 07:14:17 (14024): Guest Log: -rwxr-xr-x. 1 atlas atlas     12239 Apr 20 00:44 init_data.xml
2025-04-20 07:14:17 (14024): Guest Log: -rwxr-xr-x. 1 atlas atlas    508895 Apr 20 00:44 input.tar.gz
2025-04-20 07:14:17 (14024): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 20 00:44 start_atlas.sh
2025-04-20 07:14:17 (14024): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 20 00:44 EVNT.44075481._003446.pool.root.1 -> /data/./ATLAS.root_0
2025-04-20 07:14:17 (14024): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 20 00:44 pandaJob.out
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas       424 Apr 20 00:44 setup.sh.local
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas    991300 Apr 20 00:44 agis_schedconf.cvmfs.json
2025-04-20 07:14:17 (14024): Guest Log: drwx------. 4 atlas atlas      4096 Apr 20 00:44 pilot3
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas 196462070 Apr 20 05:13 HITS.44075483._088376.pool.root.1
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas        95 Apr 20 05:13 pilot_heartbeat.json
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas      1035 Apr 20 05:13 memory_monitor_summary.json
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 20 05:13 agis_ddmendpoints.agis.ALL.json
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas    316505 Apr 20 05:13 log.44075483._088376.job.log.tgz.1
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas      7748 Apr 20 05:13 heartbeat.json
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 20 05:14 pilotlog.txt
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas   1346271 Apr 20 05:14 log.44075483._088376.job.log.1
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas       357 Apr 20 05:14 output.list
2025-04-20 07:14:17 (14024): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 20 05:14 runtime_log
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas   1679360 Apr 20 05:14 result.tar.gz
2025-04-20 07:14:17 (14024): Guest Log: -rw-r--r--. 1 atlas atlas     10960 Apr 20 05:14 runtime_log.err
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas       663 Apr 20 05:14 63PLDmGjUQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmYy6KDms7KkDo.diag
2025-04-20 07:14:17 (14024): Guest Log: Looking for outputfile HITS.44075483._088376.pool.root.1
2025-04-20 07:14:17 (14024): Guest Log: HITS file was successfully produced
2025-04-20 07:14:17 (14024): Guest Log: -rw-------. 1 atlas atlas 196462070 Apr 20 05:13 /home/atlas/RunAtlas/HITS.44075483._088376.pool.root.1
2025-04-20 07:14:19 (14024): Guest Log: Successfully finished the ATLAS job!
2025-04-20 07:14:19 (14024): Guest Log: Copying the results back to the shared directory!
2025-04-20 07:14:19 (14024): Guest Log:  *** Contents of shared directory: ***
2025-04-20 07:14:19 (14024): Guest Log: total 411328
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root 222509306 Apr 20 00:43 ATLAS.root_0
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root 196462070 Apr 20 05:14 HITS.pool.root.1
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root     12239 Apr 20 00:43 init_data.xml
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root    508895 Apr 20 00:42 input.tar.gz
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root   1679360 Apr 20 05:14 result.tar.gz
2025-04-20 07:14:19 (14024): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 20 00:42 start_atlas.sh
2025-04-20 07:14:19 (14024): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-20 07:14:19 (14024): VM Completion File Detected.
2025-04-20 07:14:19 (14024): Powering off VM.
2025-04-20 07:14:20 (14024): Successfully stopped VM.
2025-04-20 07:14:20 (14024): Deregistering VM. (boinc_a2da332ad55773bc, slot#0)
2025-04-20 07:14:20 (14024): Removing network bandwidth throttle group from VM.
2025-04-20 07:14:20 (14024): Removing VM from VirtualBox.
07:14:25 (14024): called boinc_finish(0)

</stderr_txt>
]]>

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