Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:31:41 (226051): wrapper (7.7.26015): starting
01:31:41 (226051): wrapper: running run_atlas (--nthreads 12)
[2025-04-20 01:31:41] Arguments: --nthreads 12
[2025-04-20 01:31:41] Threads: 12
[2025-04-20 01:31:41] Checking for CVMFS
[2025-04-20 01:31:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-20 01:31:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-20 01:31:42] Running cvmfs_config stat atlas.cern.ch
[2025-04-20 01:31:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-20 01:31:45] 2.12.7.0 3563 390 57520 145055 3 56 3625592 4096001 0 130560 0 522343 99.975 243816 1824 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-20 01:31:45] CVMFS is ok
[2025-04-20 01:31:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-20 01:31:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-20 01:31:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-20 01:31:45] Further information can be found at the LHC@home message board.
[2025-04-20 01:31:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-20 01:31:45] Checking for apptainer binary...
[2025-04-20 01:31:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-20 01:31:45] Running /usr/bin/apptainer --version
[2025-04-20 01:31:45] apptainer version 1.3.6
[2025-04-20 01:31:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-20 01:31:45] subzero
[2025-04-20 01:31:45] apptainer works
[2025-04-20 01:31:45] Set ATHENA_PROC_NUMBER=12
[2025-04-20 01:31:45] Set ATHENA_CORE_NUMBER=12
[2025-04-20 01:31:45] Starting ATLAS job with PandaID=6608071883
[2025-04-20 01:31:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/david/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 02:19:58]  *** The last 200 lines of the pilot log: ***
[2025-04-20 02:19:58]  mtime=0
[2025-04-20 02:19:58]  protocol_id=None
[2025-04-20 02:19:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-20 02:19:58]  replicas=None
[2025-04-20 02:19:58]  scope=mc23_13p6TeV
[2025-04-20 02:19:58]  status=None
[2025-04-20 02:19:58]  status_code=0
[2025-04-20 02:19:58]  storage_token=
[2025-04-20 02:19:58]  surl=/home/david/boinc/slots/0/PanDA_Pilot-6608071883/log.44075483._087004.job.log.tgz.1
[2025-04-20 02:19:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/f6/log.44075483._087004.job.log.tgz.1
[2025-04-20 02:19:58]  workdir=None
[2025-04-20 02:19:58] ]
[2025-04-20 02:19:58] 2025-04-20 00:19:34,616 | INFO     | transferring file log.44075483._087004.job.log.tgz.1 from /home/david/boinc/slots/0/PanDA_Pilot-6608071883/log.44075483._087004.job.log.tgz.1 to /home/david/boinc/
[2025-04-20 02:19:58] 2025-04-20 00:19:34,616 | INFO     | executing command: /usr/bin/env mv /home/david/boinc/slots/0/PanDA_Pilot-6608071883/log.44075483._087004.job.log.tgz.1 /home/david/boinc/slots/0/log.44075483._0870
[2025-04-20 02:19:58] 2025-04-20 00:19:34,625 | INFO     | adding to output.list: log.44075483._087004.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/f6/log.44075483._087004.job.log.tg
[2025-04-20 02:19:58] 2025-04-20 00:19:34,625 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-20 02:19:58] 2025-04-20 00:19:34,625 | INFO     | summary of transferred files:
[2025-04-20 02:19:58] 2025-04-20 00:19:34,625 | INFO     |  -- lfn=log.44075483._087004.job.log.tgz.1, status_code=0, status=transferred
[2025-04-20 02:19:58] 2025-04-20 00:19:34,626 | INFO     | stage-out finished correctly
[2025-04-20 02:19:58] 2025-04-20 00:19:36,268 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-20 02:19:58] 2025-04-20 00:19:36,304 | INFO     | job 6608071883 has state=finished
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | preparing for final server update for job 6608071883 in state='finished'
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | this job has now completed (state=finished)
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | log transfer has been attempted: DONE
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | job 6608071883 has finished - writing final server update
[2025-04-20 02:19:58] 2025-04-20 00:19:36,305 | INFO     | total number of processed events: 400 (read)
[2025-04-20 02:19:58] 2025-04-20 00:19:36,306 | INFO     | executing command: lscpu
[2025-04-20 02:19:58] 2025-04-20 00:19:36,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-20 02:19:58] 2025-04-20 00:19:38,520 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-20 02:19:58] 2025-04-20 00:19:38,520 | INFO     | using path: /home/david/boinc/slots/0/PanDA_Pilot-6608071883/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 02:19:58] 2025-04-20 00:19:38,521 | INFO     | extracted standard info from prmon json
[2025-04-20 02:19:58] 2025-04-20 00:19:38,521 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 02:19:58] 2025-04-20 00:19:38,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 02:19:58] 2025-04-20 00:19:38,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 02:19:58] 2025-04-20 00:19:38,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | fitting pss+swap vs Time
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | sum of square deviations: 19832930.0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | sum of deviations: 9902911410.0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | mean x: 1745107022.5
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | mean y: 2867370.9
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | -- intersect: -871358058361.5247
[2025-04-20 02:19:58] 2025-04-20 00:19:38,522 | INFO     | intersect: -871358058361.5247
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | chi2: 1.295933605805119
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | -- intersect: -871358058361.5247
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | current memory leak: 499.32 B/s (using 40 data points, chi2=1.30)
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | ..............................
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . Timing measurements:
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . get job = 0 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . initial setup = 1 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . payload setup = 2 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . stage-in = 0 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . payload execution = 2843 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . stage-out = 0 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | . log creation = 0 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,523 | INFO     | ..............................
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | 
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | job summary report
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | --------------------------------------------------
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | PanDA job id: 6608071883
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | task id: 44075483
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | errors: (none)
[2025-04-20 02:19:58] 2025-04-20 00:19:38,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | pilot state: finished 
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | transexitcode: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | exeerrorcode: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | exeerrordiag: 
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | exitcode: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | exitmsg: OK
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | cpuconsumptiontime: 25151 s
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | nevents: 400
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | neventsw: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | pid: 236321
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | pgrp: 236321
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | corecount: 12
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | event service: False
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | sizes: {0: 2426776, 2: 2426982, 10: 2427010, 2850: 2452340, 2852: 2461287, 2853: 2461343, 2855: 2461641}
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | --------------------------------------------------
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | 
[2025-04-20 02:19:58] 2025-04-20 00:19:38,564 | INFO     | executing command: ls -lF /home/david/boinc/slots/0
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,574 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | job 6608071883 has completed (purged errors)
[2025-04-20 02:19:58] 2025-04-20 00:19:38,575 | INFO     | overall cleanup function is called
[2025-04-20 02:19:58] 2025-04-20 00:19:39,515 | WARNING  | process 236321 can no longer be monitored (due to stat problems) - aborting
[2025-04-20 02:19:58] 2025-04-20 00:19:39,563 | INFO     | using path: /home/david/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 02:19:58] 2025-04-20 00:19:39,564 | INFO     | using path: /home/david/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 02:19:58] 2025-04-20 00:19:39,564 | INFO     | skipping file size check of payload stdout file (/home/david/boinc/slots/0/PanDA_Pilot-6608071883/payload.stdout) since it has not been created yet
[2025-04-20 02:19:58] 2025-04-20 00:19:39,564 | INFO     | executing command: df -mP /home/david/boinc/slots/0
[2025-04-20 02:19:58] 2025-04-20 00:19:39,572 | INFO     | sufficient remaining disk space (238556282880 B)
[2025-04-20 02:19:58] 2025-04-20 00:19:39,572 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-04-20 02:19:58] 2025-04-20 00:19:39,572 | INFO     | output file size check: skipping output file /home/david/boinc/slots/0/PanDA_Pilot-6608071883/HITS.44075483._087004.pool.root.1 since it does not exist
[2025-04-20 02:19:58] 2025-04-20 00:19:39,580 | INFO     | --- collectZombieJob: --- 10, [236321]
[2025-04-20 02:19:58] 2025-04-20 00:19:39,580 | INFO     | zombie collector waiting for pid 236321
[2025-04-20 02:19:58] 2025-04-20 00:19:39,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 02:19:58] 2025-04-20 00:19:39,580 | INFO     | collected zombie processes
[2025-04-20 02:19:58] 2025-04-20 00:19:39,580 | INFO     | will attempt to kill all subprocesses of pid=236321
[2025-04-20 02:19:58] 2025-04-20 00:19:39,735 | INFO     | number of running child processes to parent process 236321: 1
[2025-04-20 02:19:58] 2025-04-20 00:19:39,735 | INFO     | maximum number of monitored processes: 6
[2025-04-20 02:19:58] 2025-04-20 00:19:39,735 | INFO     | aborting job monitoring since job object (job id=6608071883) has expired
[2025-04-20 02:19:58] 2025-04-20 00:19:39,740 | INFO     | process IDs to be killed: [236321] (in reverse order)
[2025-04-20 02:19:58] 2025-04-20 00:19:39,764 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 02:19:58] 2025-04-20 00:19:39,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 02:19:58] 2025-04-20 00:19:39,767 | INFO     | did not find any defunct processes belonging to 236321
[2025-04-20 02:19:58] 2025-04-20 00:19:39,768 | INFO     | did not find any defunct processes belonging to 236321
[2025-04-20 02:19:58] 2025-04-20 00:19:39,768 | INFO     | ready for new job
[2025-04-20 02:19:58] 2025-04-20 00:19:39,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 02:19:58] 2025-04-20 00:19:39,769 | INFO     | **************************************
[2025-04-20 02:19:58] 2025-04-20 00:19:39,769 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 02:19:58] 2025-04-20 00:19:39,769 | INFO     | **************************************
[2025-04-20 02:19:58] 2025-04-20 00:19:39,769 | INFO     | 
[2025-04-20 02:19:58] 2025-04-20 00:19:39,770 | INFO     | architecture information:
[2025-04-20 02:19:58] 2025-04-20 00:19:39,770 | INFO     | executing command: cat /etc/os-release
[2025-04-20 02:19:58] 2025-04-20 00:19:39,776 | INFO     | cat /etc/os-release:
[2025-04-20 02:19:58] NAME="CentOS Linux"
[2025-04-20 02:19:58] VERSION="7 (Core)"
[2025-04-20 02:19:58] ID="centos"
[2025-04-20 02:19:58] ID_LIKE="rhel fedora"
[2025-04-20 02:19:58] VERSION_ID="7"
[2025-04-20 02:19:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 02:19:58] ANSI_COLOR="0;31"
[2025-04-20 02:19:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 02:19:58] HOME_URL="https://www.centos.org/"
[2025-04-20 02:19:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 02:19:58] 
[2025-04-20 02:19:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 02:19:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 02:19:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 02:19:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 02:19:58] 
[2025-04-20 02:19:58] 2025-04-20 00:19:39,776 | INFO     | **************************************
[2025-04-20 02:19:58] 2025-04-20 00:19:40,279 | INFO     | executing command: df -mP /home/david/boinc/slots/0
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | INFO     | sufficient remaining disk space (238556282880 B)
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | INFO     | update_server=False
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 02:19:58] 2025-04-20 00:19:40,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 02:19:58] 2025-04-20 00:19:40,289 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 02:19:58] 2025-04-20 00:19:40,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 02:19:58] 2025-04-20 00:19:40,289 | INFO     | will abort loop
[2025-04-20 02:19:58] 2025-04-20 00:19:40,293 | INFO     | all data control threads have been joined
[2025-04-20 02:19:58] 2025-04-20 00:19:40,348 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 02:19:58] 2025-04-20 00:19:40,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 02:19:58] 2025-04-20 00:19:40,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 02:19:58] 2025-04-20 00:19:40,413 | INFO     | all payload control threads have been joined
[2025-04-20 02:19:58] 2025-04-20 00:19:41,293 | INFO     | [job] queue monitor thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,293 | INFO     | [job] retrieve thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,293 | INFO     | [job] job monitor thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,296 | INFO     | [data] control thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,418 | INFO     | [payload] control thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,476 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,508 | INFO     | [data] copytool_in thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,660 | INFO     | [payload] failed_post thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:41,879 | INFO     | all job control threads have been joined
[2025-04-20 02:19:58] 2025-04-20 00:19:42,216 | INFO     | [payload] validate_post thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:42,294 | INFO     | [data] copytool_out thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:42,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 02:19:58] 2025-04-20 00:19:42,473 | INFO     | [job] validate thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:42,623 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:42,649 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:42,883 | INFO     | [job] control thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:46,315 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:51,118 | INFO     | job.realtimelogging is not enabled
[2025-04-20 02:19:58] 2025-04-20 00:19:52,123 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 02:19:58] 2025-04-20 00:19:52,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340792207168)>', '<ExcThread(monitor, started 140340287739648)>']
[2025-04-20 02:19:58] 2025-04-20 00:19:53,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 02:19:58] 2025-04-20 00:19:53,410 | INFO     | [monitor] control thread has ended
[2025-04-20 02:19:58] 2025-04-20 00:19:58,000 | INFO     | all workflow threads have been joined
[2025-04-20 02:19:58] 2025-04-20 00:19:58,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 02:19:58] 2025-04-20 00:19:58,000 | INFO     | traces error code: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:58,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 02:19:58] 2025-04-20 00:19:58,050 [wrapper] ==== pilot stdout END ====
[2025-04-20 02:19:58] 2025-04-20 00:19:58,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 02:19:58] 2025-04-20 00:19:58,053 [wrapper] pilotpid: 229749
[2025-04-20 02:19:58] 2025-04-20 00:19:58,054 [wrapper] Pilot exit status: 0
[2025-04-20 02:19:58] 2025-04-20 00:19:58,059 [wrapper] pandaids: 6608071883
[2025-04-20 02:19:58] 2025-04-20 00:19:58,077 [wrapper] cleanup supervisor_pilot  250966 229750
[2025-04-20 02:19:58] 2025-04-20 00:19:58,079 [wrapper] Test setup, not cleaning
[2025-04-20 02:19:58] 2025-04-20 00:19:58,080 [wrapper] apfmon messages muted
[2025-04-20 02:19:58] 2025-04-20 00:19:58,082 [wrapper] ==== wrapper stdout END ====
[2025-04-20 02:19:58] 2025-04-20 00:19:58,083 [wrapper] ==== wrapper stderr END ====
[2025-04-20 02:19:58]  *** Error codes and diagnostics ***
[2025-04-20 02:19:58]     "exeErrorCode": 0,
[2025-04-20 02:19:58]     "exeErrorDiag": "",
[2025-04-20 02:19:58]     "pilotErrorCode": 0,
[2025-04-20 02:19:58]     "pilotErrorDiag": "",
[2025-04-20 02:19:58]  *** Listing of results directory ***
[2025-04-20 02:19:58] total 415324
[2025-04-20 02:19:58] -rw-r--r-- 1 david david    495897 Apr 19 20:50 pilot3.tar.gz
[2025-04-20 02:19:58] -rw-r--r-- 1 david david      5111 Apr 19 20:51 queuedata.json
[2025-04-20 02:19:58] -rwx------ 1 david david     37140 Apr 19 20:52 runpilot2-wrapper.sh
[2025-04-20 02:19:58] -rw-r--r-- 1 david david       100 Apr 20 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 02:19:58] -rwxr-xr-x 1 david david      7986 Apr 20 01:31 run_atlas
[2025-04-20 02:19:58] -rw-r--r-- 1 david david       105 Apr 20 01:31 job.xml
[2025-04-20 02:19:58] -rw-r--r-- 2 david david     17569 Apr 20 01:31 start_atlas.sh
[2025-04-20 02:19:58] drwxrwx--x 1 david david        76 Apr 20 01:31 shared
[2025-04-20 02:19:58] -rw-r--r-- 2 david david    508893 Apr 20 01:31 input.tar.gz
[2025-04-20 02:19:58] -rw-r--r-- 2 david david 225756772 Apr 20 01:31 EVNT.44075481._003393.pool.root.1
[2025-04-20 02:19:58] -rw-r--r-- 1 david david         0 Apr 20 01:31 boinc_setup_complete
[2025-04-20 02:19:58] -rw-r--r-- 1 david david      7526 Apr 20 01:31 init_data.xml
[2025-04-20 02:19:58] -rw-r--r-- 1 david david         0 Apr 20 01:31 boinc_lockfile
[2025-04-20 02:19:58] -rw-r--r-- 1 david david      2578 Apr 20 01:31 pandaJob.out
[2025-04-20 02:19:58] -rw------- 1 david david       424 Apr 20 01:31 setup.sh.local
[2025-04-20 02:19:58] -rw------- 1 david david    991300 Apr 20 01:31 agis_schedconf.cvmfs.json
[2025-04-20 02:19:58] -rw------- 1 david david   1618536 Apr 20 01:31 agis_ddmendpoints.agis.ALL.json
[2025-04-20 02:19:58] drwx------ 1 david david       368 Apr 20 01:31 pilot3
[2025-04-20 02:19:58] -rw------- 1 david david        95 Apr 20 02:19 pilot_heartbeat.json
[2025-04-20 02:19:58] -rw------- 1 david david 194406368 Apr 20 02:19 HITS.44075483._087004.pool.root.1
[2025-04-20 02:19:58] -rw-r--r-- 1 david david       530 Apr 20 02:19 boinc_task_state.xml
[2025-04-20 02:19:58] -rw------- 1 david david      1019 Apr 20 02:19 memory_monitor_summary.json
[2025-04-20 02:19:58] -rw------- 1 david david    337527 Apr 20 02:19 log.44075483._087004.job.log.tgz.1
[2025-04-20 02:19:58] -rw------- 1 david david      7655 Apr 20 02:19 heartbeat.json
[2025-04-20 02:19:58] -rw-r--r-- 1 david david      8192 Apr 20 02:19 boinc_mmap_file
[2025-04-20 02:19:58] -rw-r--r-- 1 david david        27 Apr 20 02:19 wrapper_checkpoint.txt
[2025-04-20 02:19:58] -rw------- 1 david david      4431 Apr 20 02:19 pilotlog.txt
[2025-04-20 02:19:58] -rw------- 1 david david    304124 Apr 20 02:19 log.44075483._087004.job.log.1
[2025-04-20 02:19:58] -rw------- 1 david david       357 Apr 20 02:19 output.list
[2025-04-20 02:19:58] -rw-r--r-- 1 david david       620 Apr 20 02:19 runtime_log
[2025-04-20 02:19:58] -rw------- 1 david david    655360 Apr 20 02:19 result.tar.gz
[2025-04-20 02:19:58] -rw-r--r-- 1 david david     11014 Apr 20 02:19 runtime_log.err
[2025-04-20 02:19:58] -rw------- 1 david david       639 Apr 20 02:19 51LKDm8TSQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmrfiLDmorZtOm.diag
[2025-04-20 02:19:58] -rw-r--r-- 1 david david     21797 Apr 20 02:19 stderr.txt
[2025-04-20 02:19:58] HITS file was successfully produced:
[2025-04-20 02:19:58] -rw------- 1 david david 194406368 Apr 20 02:19 shared/HITS.pool.root.1
[2025-04-20 02:19:58]  *** Contents of shared directory: ***
[2025-04-20 02:19:58] total 411480
[2025-04-20 02:19:58] -rw-r--r-- 2 david david     17569 Apr 20 01:31 start_atlas.sh
[2025-04-20 02:19:58] -rw-r--r-- 2 david david    508893 Apr 20 01:31 input.tar.gz
[2025-04-20 02:19:58] -rw-r--r-- 2 david david 225756772 Apr 20 01:31 ATLAS.root_0
[2025-04-20 02:19:58] -rw------- 1 david david 194406368 Apr 20 02:19 HITS.pool.root.1
[2025-04-20 02:19:58] -rw------- 1 david david    655360 Apr 20 02:19 result.tar.gz
02:19:59 (226051): run_atlas exited; CPU time 25162.294174
02:19:59 (226051): called boinc_finish(0)

</stderr_txt>
]]>

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