Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:27:50 (245578): wrapper (7.7.26015): starting
21:27:50 (245578): wrapper: running run_atlas (--nthreads 9)
[2025-04-19 21:27:50] Arguments: --nthreads 9
[2025-04-19 21:27:50] Threads: 9
[2025-04-19 21:27:50] Checking for CVMFS
[2025-04-19 21:27:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 21:27:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 21:27:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 21:27:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 21:27:53] 2.11.2.0 6664 26145 131044 145057 2 151 10459253 18432000 14759 130560 0 62566212 98.601 193932401 45213 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 21:27:53] CVMFS is ok
[2025-04-19 21:27:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 21:27:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 21:27:53] Further information can be found at the LHC@home message board.
[2025-04-19 21:27:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 21:27:53] Checking for apptainer binary...
[2025-04-19 21:27:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 21:27:53] Running /usr/bin/apptainer --version
[2025-04-19 21:27:54] apptainer version 1.3.2-1.el7
[2025-04-19 21:27:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 21:28:19] c-210-37-2.aglt2.org
[2025-04-19 21:28:19] apptainer works
[2025-04-19 21:28:19] Set ATHENA_PROC_NUMBER=9
[2025-04-19 21:28:19] Set ATHENA_CORE_NUMBER=9
[2025-04-19 21:28:19] Starting ATLAS job with PandaID=6607871234
[2025-04-19 21:28:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:30:09 (55430): wrapper (7.7.26015): starting
23:30:09 (55430): wrapper: running run_atlas (--nthreads 9)
[2025-04-19 23:30:09] Arguments: --nthreads 9
[2025-04-19 23:30:09] Threads: 9
[2025-04-19 23:30:09] This job has been restarted, cleaning up previous attempt
[2025-04-19 23:30:09] Checking for CVMFS
[2025-04-19 23:30:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 23:30:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 23:30:11] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 23:30:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 23:30:12] 2.11.2.0 6664 26267 131520 145061 0 254 12207454 18432000 12277 130560 0 62976737 98.598 194746677 45252 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 23:30:12] CVMFS is ok
[2025-04-19 23:30:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 23:30:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 23:30:12] Further information can be found at the LHC@home message board.
[2025-04-19 23:30:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 23:30:12] Checking for apptainer binary...
[2025-04-19 23:30:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 23:30:12] Running /usr/bin/apptainer --version
[2025-04-19 23:30:12] apptainer version 1.3.2-1.el7
[2025-04-19 23:30:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 23:30:18] c-210-37-2.aglt2.org
[2025-04-19 23:30:18] apptainer works
[2025-04-19 23:30:18] Set ATHENA_PROC_NUMBER=9
[2025-04-19 23:30:18] Set ATHENA_CORE_NUMBER=9
[2025-04-19 23:30:18] Starting ATLAS job with PandaID=6607871234
[2025-04-19 23:30:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 06:24:12]  *** The last 200 lines of the pilot log: ***
[2025-04-20 06:24:12] 2025-04-20 10:23:46,620 | INFO     | sum of deviations: 261756727423.48126
[2025-04-20 06:24:12] 2025-04-20 10:23:46,620 | INFO     | mean x: 1745132275.5657568
[2025-04-20 06:24:12] 2025-04-20 10:23:46,620 | INFO     | mean y: 2442478.5856079403
[2025-04-20 06:24:12] 2025-04-20 10:23:46,620 | INFO     | -- intersect: -22505093832.066956
[2025-04-20 06:24:12] 2025-04-20 10:23:46,620 | INFO     | intersect: -22505093832.066956
[2025-04-20 06:24:12] 2025-04-20 10:23:46,621 | INFO     | chi2: 9.383632565999651
[2025-04-20 06:24:12] 2025-04-20 10:23:46,632 | INFO     | sum of square deviations: 19549429100.88697
[2025-04-20 06:24:12] 2025-04-20 10:23:46,644 | INFO     | sum of deviations: 339238334579.0704
[2025-04-20 06:24:12] 2025-04-20 10:23:46,644 | INFO     | mean x: 1745132123.0728643
[2025-04-20 06:24:12] 2025-04-20 10:23:46,644 | INFO     | mean y: 2458233.3768844223
[2025-04-20 06:24:12] 2025-04-20 10:23:46,644 | INFO     | -- intersect: -30280559853.571526
[2025-04-20 06:24:12] 2025-04-20 10:23:46,644 | INFO     | intersect: -30280559853.571526
[2025-04-20 06:24:12] 2025-04-20 10:23:46,645 | INFO     | chi2: 7.079901683890952
[2025-04-20 06:24:12] 2025-04-20 10:23:46,645 | INFO     | current chi2=7.079901683890952 (change=24.550523114640725 %)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,645 | INFO     | right removable region: 397
[2025-04-20 06:24:12] 2025-04-20 10:23:46,646 | INFO     | sum of square deviations: 19549290020.886982
[2025-04-20 06:24:12] 2025-04-20 10:23:46,658 | INFO     | sum of deviations: 139924648554.50766
[2025-04-20 06:24:12] 2025-04-20 10:23:46,659 | INFO     | mean x: 1745132428.0728643
[2025-04-20 06:24:12] 2025-04-20 10:23:46,659 | INFO     | mean y: 2467353.361809045
[2025-04-20 06:24:12] 2025-04-20 10:23:46,659 | INFO     | -- intersect: -12488372028.440508
[2025-04-20 06:24:12] 2025-04-20 10:23:46,659 | INFO     | intersect: -12488372028.440508
[2025-04-20 06:24:12] 2025-04-20 10:23:46,670 | INFO     | chi2: 5.806417397764419
[2025-04-20 06:24:12] 2025-04-20 10:23:46,670 | INFO     | current chi2=5.806417397764419 (change=38.12185891844057 %)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,671 | INFO     | sum of square deviations: 18821662651.72518
[2025-04-20 06:24:12] 2025-04-20 10:23:46,684 | INFO     | sum of deviations: 50503362420.992294
[2025-04-20 06:24:12] 2025-04-20 10:23:46,685 | INFO     | mean x: 1745132580.5801528
[2025-04-20 06:24:12] 2025-04-20 10:23:46,685 | INFO     | mean y: 2486090.127226463
[2025-04-20 06:24:12] 2025-04-20 10:23:46,685 | INFO     | -- intersect: -4680153526.816635
[2025-04-20 06:24:12] 2025-04-20 10:23:46,685 | INFO     | intersect: -4680153526.816635
[2025-04-20 06:24:12] 2025-04-20 10:23:46,685 | INFO     | chi2: 4.002350174128652
[2025-04-20 06:24:12] 2025-04-20 10:23:46,686 | INFO     | current chi2=4.002350174128652 (change=31.07022971394319 %)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,686 | INFO     | sum of square deviations: 18112314695.020557
[2025-04-20 06:24:12] 2025-04-20 10:23:46,701 | INFO     | sum of deviations: -26888343987.97426
[2025-04-20 06:24:12] 2025-04-20 10:23:46,701 | INFO     | mean x: 1745132733.0876288
[2025-04-20 06:24:12] 2025-04-20 10:23:46,701 | INFO     | mean y: 2502714.2345360825
[2025-04-20 06:24:12] 2025-04-20 10:23:46,701 | INFO     | -- intersect: 2593211302.3993673
[2025-04-20 06:24:12] 2025-04-20 10:23:46,701 | INFO     | intersect: 2593211302.3993673
[2025-04-20 06:24:12] 2025-04-20 10:23:46,702 | INFO     | chi2: 2.62578266281068
[2025-04-20 06:24:12] 2025-04-20 10:23:46,702 | INFO     | current chi2=2.62578266281068 (change=34.3939798225592 %)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,716 | INFO     | sum of square deviations: 17421013588.2715
[2025-04-20 06:24:12] 2025-04-20 10:23:46,743 | INFO     | sum of deviations: -55050186965.07832
[2025-04-20 06:24:12] 2025-04-20 10:23:46,744 | INFO     | mean x: 1745132885.5953002
[2025-04-20 06:24:12] 2025-04-20 10:23:46,744 | INFO     | mean y: 2508912.289817232
[2025-04-20 06:24:12] 2025-04-20 10:23:46,744 | INFO     | -- intersect: 5517107195.802199
[2025-04-20 06:24:12] 2025-04-20 10:23:46,744 | INFO     | intersect: 5517107195.802199
[2025-04-20 06:24:12] 2025-04-20 10:23:46,744 | INFO     | chi2: 2.4281691670928636
[2025-04-20 06:24:12] 2025-04-20 10:23:46,745 | INFO     | current chi2=2.4281691670928636 (change=7.525889271669116 %)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,745 | INFO     | left removable region: 40
[2025-04-20 06:24:12] 2025-04-20 10:23:46,745 | INFO     | sum of square deviations: 14108515208.8796
[2025-04-20 06:24:12] 2025-04-20 10:23:46,760 | INFO     | sum of deviations: 25256109807.17369
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | mean x: 1745133312.6106443
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | mean y: 2525585.37535014
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | -- intersect: -3121494052.3333125
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | intersect: -3121494052.3333125
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | chi2: 0.00035271097507976205
[2025-04-20 06:24:12] 2025-04-20 10:23:46,761 | INFO     | -- intersect: -3121494052.3333125
[2025-04-20 06:24:12] 2025-04-20 10:23:46,762 | INFO     | current memory leak: 1.79 B/s (using 357 data points, chi2=0.00)
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | ..............................
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | . Timing measurements:
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | . get job = 0 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | . initial setup = 2 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | . payload setup = 36 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,776 | INFO     | . stage-in = 0 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,777 | INFO     | . payload execution = 24572 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,777 | INFO     | . stage-out = 8 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,777 | INFO     | . log creation = 1 s
[2025-04-20 06:24:12] 2025-04-20 10:23:46,777 | INFO     | ..............................
[2025-04-20 06:24:12] 2025-04-20 10:23:47,336 | INFO     | 
[2025-04-20 06:24:12] 2025-04-20 10:23:47,348 | INFO     | job summary report
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | --------------------------------------------------
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | PanDA job id: 6607871234
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | task id: 44075483
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | errors: (none)
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | pilot state: finished 
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | transexitcode: 0
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | exeerrorcode: 0
[2025-04-20 06:24:12] 2025-04-20 10:23:47,349 | INFO     | exeerrordiag: 
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | exitcode: 0
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | exitmsg: OK
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | cpuconsumptiontime: 42531 s
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | nevents: 400
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | neventsw: 0
[2025-04-20 06:24:12] 2025-04-20 10:23:47,350 | INFO     | pid: 86215
[2025-04-20 06:24:12] 2025-04-20 10:23:47,367 | INFO     | pgrp: 86215
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | corecount: 9
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | event service: False
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | sizes: {0: 2425995, 1: 2426851, 12: 2426851, 23: 2426879, 28: 2427113, 34: 2427141, 24613: 2461758, 24623: 2470699, 24624: 2470755, 24697: 2470925}
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | --------------------------------------------------
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | 
[2025-04-20 06:24:12] 2025-04-20 10:23:47,368 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-20 06:24:12] 2025-04-20 10:23:47,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 06:24:12] 2025-04-20 10:23:47,635 | INFO     | job 6607871234 has completed (purged errors)
[2025-04-20 06:24:12] 2025-04-20 10:23:47,636 | INFO     | overall cleanup function is called
[2025-04-20 06:24:12] 2025-04-20 10:23:48,657 | INFO     | --- collectZombieJob: --- 10, [86215]
[2025-04-20 06:24:12] 2025-04-20 10:23:48,658 | INFO     | zombie collector waiting for pid 86215
[2025-04-20 06:24:12] 2025-04-20 10:23:48,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 06:24:12] 2025-04-20 10:23:48,658 | INFO     | collected zombie processes
[2025-04-20 06:24:12] 2025-04-20 10:23:48,658 | INFO     | will attempt to kill all subprocesses of pid=86215
[2025-04-20 06:24:12] 2025-04-20 10:23:50,456 | INFO     | process IDs to be killed: [86215] (in reverse order)
[2025-04-20 06:24:12] 2025-04-20 10:23:51,156 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 06:24:12] 2025-04-20 10:23:51,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 06:24:12] 2025-04-20 10:23:51,200 | INFO     | did not find any defunct processes belonging to 86215
[2025-04-20 06:24:12] 2025-04-20 10:23:51,278 | INFO     | did not find any defunct processes belonging to 86215
[2025-04-20 06:24:12] 2025-04-20 10:23:51,278 | INFO     | ready for new job
[2025-04-20 06:24:12] 2025-04-20 10:23:51,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 06:24:12] 2025-04-20 10:23:51,292 | INFO     | **************************************
[2025-04-20 06:24:12] 2025-04-20 10:23:51,292 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 06:24:12] 2025-04-20 10:23:51,292 | INFO     | **************************************
[2025-04-20 06:24:12] 2025-04-20 10:23:51,292 | INFO     | 
[2025-04-20 06:24:12] 2025-04-20 10:23:51,303 | INFO     | architecture information:
[2025-04-20 06:24:12] 2025-04-20 10:23:51,315 | INFO     | executing command: cat /etc/os-release
[2025-04-20 06:24:12] 2025-04-20 10:23:51,502 | INFO     | cat /etc/os-release:
[2025-04-20 06:24:12] NAME="CentOS Linux"
[2025-04-20 06:24:12] VERSION="7 (Core)"
[2025-04-20 06:24:12] ID="centos"
[2025-04-20 06:24:12] ID_LIKE="rhel fedora"
[2025-04-20 06:24:12] VERSION_ID="7"
[2025-04-20 06:24:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 06:24:12] ANSI_COLOR="0;31"
[2025-04-20 06:24:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 06:24:12] HOME_URL="https://www.centos.org/"
[2025-04-20 06:24:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 06:24:12] 
[2025-04-20 06:24:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 06:24:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 06:24:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 06:24:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 06:24:12] 
[2025-04-20 06:24:12] 2025-04-20 10:23:51,502 | INFO     | **************************************
[2025-04-20 06:24:12] 2025-04-20 10:23:52,005 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-20 06:24:12] 2025-04-20 10:23:52,183 | INFO     | sufficient remaining disk space (56080990208 B)
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | INFO     | update_server=False
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 06:24:12] 2025-04-20 10:23:52,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 06:24:12] 2025-04-20 10:23:52,185 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 06:24:12] 2025-04-20 10:23:52,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 06:24:12] 2025-04-20 10:23:52,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 06:24:12] 2025-04-20 10:23:52,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 06:24:12] 2025-04-20 10:23:52,271 | INFO     | aborting loop
[2025-04-20 06:24:12] 2025-04-20 10:23:52,601 | INFO     | all data control threads have been joined
[2025-04-20 06:24:12] 2025-04-20 10:23:53,189 | INFO     | [job] retrieve thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,230 | INFO     | [job] queue monitor thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,280 | INFO     | [job] job monitor thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,309 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,314 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,324 | INFO     | [payload] validate_post thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,599 | INFO     | [payload] failed_post thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,615 | INFO     | [data] control thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,623 | INFO     | all job control threads have been joined
[2025-04-20 06:24:12] 2025-04-20 10:23:53,675 | INFO     | all payload control threads have been joined
[2025-04-20 06:24:12] 2025-04-20 10:23:53,846 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,852 | INFO     | [data] copytool_in thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,909 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:53,997 | INFO     | [job] validate thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:54,191 | INFO     | [data] copytool_out thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:54,629 | INFO     | [job] control thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:54,688 | INFO     | [payload] control thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:56,259 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 06:24:12] 2025-04-20 10:23:57,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139653364688704)>', '<ExcThread(monitor, started 139652765820672)>']
[2025-04-20 06:24:12] 2025-04-20 10:23:58,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 06:24:12] 2025-04-20 10:23:58,240 | INFO     | [monitor] control thread has ended
[2025-04-20 06:24:12] 2025-04-20 10:24:02,742 | INFO     | all workflow threads have been joined
[2025-04-20 06:24:12] 2025-04-20 10:24:02,743 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 06:24:12] 2025-04-20 10:24:02,758 | INFO     | traces error code: 0
[2025-04-20 06:24:12] 2025-04-20 10:24:02,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 06:24:12] 2025-04-20 10:24:07,257 [wrapper] ==== pilot stdout END ====
[2025-04-20 06:24:12] 2025-04-20 10:24:07,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 06:24:12] 2025-04-20 10:24:07,398 [wrapper] pilotpid: 66563
[2025-04-20 06:24:12] 2025-04-20 10:24:07,585 [wrapper] Pilot exit status: 0
[2025-04-20 06:24:12] 2025-04-20 10:24:07,930 [wrapper] pandaids: 6607871234 6607871234
[2025-04-20 06:24:12] 2025-04-20 10:24:08,938 [wrapper] cleanup supervisor_pilot 143850 66564
[2025-04-20 06:24:12] 2025-04-20 10:24:08,986 [wrapper] Test setup, not cleaning
[2025-04-20 06:24:12] 2025-04-20 10:24:09,130 [wrapper] apfmon messages muted
[2025-04-20 06:24:12] 2025-04-20 10:24:09,206 [wrapper] ==== wrapper stdout END ====
[2025-04-20 06:24:12] 2025-04-20 10:24:09,261 [wrapper] ==== wrapper stderr END ====
[2025-04-20 06:24:12]  *** Error codes and diagnostics ***
[2025-04-20 06:24:12]     "exeErrorCode": 0,
[2025-04-20 06:24:12]     "exeErrorDiag": "",
[2025-04-20 06:24:12]     "pilotErrorCode": 0,
[2025-04-20 06:24:12]     "pilotErrorDiag": "",
[2025-04-20 06:24:12]  *** Listing of results directory ***
[2025-04-20 06:24:12] total 628360
[2025-04-20 06:24:12] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 10:16 queuedata.json
[2025-04-20 06:24:12] -rwx------ 1 boincer umatlas     37140 Apr 19 10:17 runpilot2-wrapper.sh
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 10:17 pilot3.tar.gz
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas       100 Apr 19 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 06:24:12] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 21:27 run_atlas
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas       105 Apr 19 21:27 job.xml
[2025-04-20 06:24:12] -rw-r--r-- 3 boincer umatlas 222302303 Apr 19 21:27 EVNT.44075481._003253.pool.root.1
[2025-04-20 06:24:12] -rw-r--r-- 3 boincer umatlas 222302303 Apr 19 21:27 ATLAS.root_0
[2025-04-20 06:24:12] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 21:27 start_atlas.sh
[2025-04-20 06:24:12] drwxrwx--x 2 boincer umatlas      4096 Apr 19 21:27 shared
[2025-04-20 06:24:12] -rw-r--r-- 2 boincer umatlas    508885 Apr 19 21:27 input.tar.gz
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas         0 Apr 19 21:27 boinc_lockfile
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas      2578 Apr 19 23:30 pandaJob.out
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas       467 Apr 19 23:30 setup.sh.local
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas    991292 Apr 19 23:31 agis_schedconf.cvmfs.json
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas 190067488 Apr 20 06:19 HITS.44075483._083948.pool.root.1
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas       531 Apr 20 06:19 boinc_task_state.xml
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas      1064 Apr 20 06:22 memory_monitor_summary.json
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas   1618536 Apr 20 06:22 agis_ddmendpoints.agis.ALL.json
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas    500800 Apr 20 06:22 log.44075483._083948.job.log.tgz.1
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas      6355 Apr 20 06:23 init_data.xml
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas        96 Apr 20 06:23 pilot_heartbeat.json
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas      7763 Apr 20 06:23 heartbeat.json
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas      4476 Apr 20 06:24 pilotlog.txt
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas      8192 Apr 20 06:24 boinc_mmap_file
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas        28 Apr 20 06:24 wrapper_checkpoint.txt
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas   1943051 Apr 20 06:24 log.44075483._083948.job.log.1
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas       357 Apr 20 06:24 output.list
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas       620 Apr 20 06:24 runtime_log
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas   2467840 Apr 20 06:24 result.tar.gz
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas     11514 Apr 20 06:24 runtime_log.err
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas       789 Apr 20 06:24 K6FLDm3BOQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmx7hLDmNvDLmn.diag
[2025-04-20 06:24:12] -rw-r--r-- 1 boincer umatlas     23011 Apr 20 06:24 stderr.txt
[2025-04-20 06:24:12] HITS file was successfully produced:
[2025-04-20 06:24:12] -rw------- 1 boincer umatlas 190067488 Apr 20 06:19 shared/HITS.pool.root.1
[2025-04-20 06:24:12]  *** Contents of shared directory: ***
[2025-04-20 06:24:13] total 405648
[2025-04-20 06:24:13] -rw-r--r-- 3 boincer umatlas 222302303 Apr 19 21:27 ATLAS.root_0
[2025-04-20 06:24:13] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 21:27 start_atlas.sh
[2025-04-20 06:24:13] -rw-r--r-- 2 boincer umatlas    508885 Apr 19 21:27 input.tar.gz
[2025-04-20 06:24:13] -rw------- 1 boincer umatlas 190067488 Apr 20 06:19 HITS.pool.root.1
[2025-04-20 06:24:13] -rw------- 1 boincer umatlas   2467840 Apr 20 06:24 result.tar.gz
06:24:14 (55430): run_atlas exited; CPU time 43011.875357
06:24:14 (55430): called boinc_finish(0)

</stderr_txt>
]]>

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