Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:02:51 (1395968): wrapper (7.7.26015): starting
06:02:51 (1395968): wrapper: running run_atlas (--nthreads 3)
[2025-04-20 06:02:51] Arguments: --nthreads 3
[2025-04-20 06:02:51] Threads: 3
[2025-04-20 06:02:51] Checking for CVMFS
[2025-04-20 06:02:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-20 06:02:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-20 06:02:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-20 06:02:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-20 06:02:52] 2.9.2.0 2894 5408 77620 145059 2 61 27670737 36864000 0 130560 0 3556998 99.989 1398251 15015 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-20 06:02:52] CVMFS is ok
[2025-04-20 06:02:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-20 06:02:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-20 06:02:52] Further information can be found at the LHC@home message board.
[2025-04-20 06:02:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-20 06:02:52] Checking for apptainer binary...
[2025-04-20 06:02:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-20 06:02:52] Running /usr/bin/apptainer --version
[2025-04-20 06:02:52] apptainer version 1.3.6-6.1
[2025-04-20 06:02:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-20 06:02:52] magicA244b
[2025-04-20 06:02:52] apptainer works
[2025-04-20 06:02:52] Set ATHENA_PROC_NUMBER=3
[2025-04-20 06:02:52] Set ATHENA_CORE_NUMBER=3
[2025-04-20 06:02:52] Starting ATLAS job with PandaID=6607874796
[2025-04-20 06:02:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 07:39:52]  *** The last 200 lines of the pilot log: ***
[2025-04-20 07:39:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-20 07:39:52]  is_altstaged=None
[2025-04-20 07:39:52]  is_tar=False
[2025-04-20 07:39:52]  lfn=log.44075483._085206.job.log.tgz.1
[2025-04-20 07:39:52]  mtime=0
[2025-04-20 07:39:52]  protocol_id=None
[2025-04-20 07:39:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-20 07:39:52]  replicas=None
[2025-04-20 07:39:52]  scope=mc23_13p6TeV
[2025-04-20 07:39:52]  status=None
[2025-04-20 07:39:52]  status_code=0
[2025-04-20 07:39:52]  storage_token=
[2025-04-20 07:39:52]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6607874796/log.44075483._085206.job.log.tgz.1
[2025-04-20 07:39:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/80/log.44075483._085206.job.log.tgz.1
[2025-04-20 07:39:52]  workdir=None
[2025-04-20 07:39:52] ]
[2025-04-20 07:39:52] 2025-04-20 05:39:23,715 | INFO     | transferring file log.44075483._085206.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6607874796/log.44075483._085206.job.log.tgz.1 to /local/data/boinc/
[2025-04-20 07:39:52] 2025-04-20 05:39:23,715 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6607874796/log.44075483._085206.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0852
[2025-04-20 07:39:52] 2025-04-20 05:39:23,728 | INFO     | adding to output.list: log.44075483._085206.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/80/log.44075483._085206.job.log.tg
[2025-04-20 07:39:52] 2025-04-20 05:39:23,728 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-20 07:39:52] 2025-04-20 05:39:23,728 | INFO     | summary of transferred files:
[2025-04-20 07:39:52] 2025-04-20 05:39:23,728 | INFO     |  -- lfn=log.44075483._085206.job.log.tgz.1, status_code=0, status=transferred
[2025-04-20 07:39:52] 2025-04-20 05:39:23,728 | INFO     | stage-out finished correctly
[2025-04-20 07:39:52] 2025-04-20 05:39:23,760 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-20 07:39:52] 2025-04-20 05:39:24,920 | INFO     | monitor loop #443: job 0:6607874796 is in state 'finished'
[2025-04-20 07:39:52] 2025-04-20 05:39:24,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 07:39:52] 2025-04-20 05:39:25,634 | INFO     | job 6607874796 has state=finished
[2025-04-20 07:39:52] 2025-04-20 05:39:25,635 | INFO     | preparing for final server update for job 6607874796 in state='finished'
[2025-04-20 07:39:52] 2025-04-20 05:39:25,636 | INFO     | this job has now completed (state=finished)
[2025-04-20 07:39:52] 2025-04-20 05:39:25,636 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-20 07:39:52] 2025-04-20 05:39:25,636 | INFO     | log transfer has been attempted: DONE
[2025-04-20 07:39:52] 2025-04-20 05:39:25,636 | INFO     | job 6607874796 has finished - writing final server update
[2025-04-20 07:39:52] 2025-04-20 05:39:25,637 | INFO     | total number of processed events: 400 (read)
[2025-04-20 07:39:52] 2025-04-20 05:39:25,640 | INFO     | executing command: lscpu
[2025-04-20 07:39:52] 2025-04-20 05:39:25,656 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-20 07:39:52] 2025-04-20 05:39:27,423 | INFO     | monitor loop #444: job 0:6607874796 is in state 'finished'
[2025-04-20 07:39:52] 2025-04-20 05:39:27,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 07:39:52] 2025-04-20 05:39:29,927 | INFO     | monitor loop #445: job 0:6607874796 is in state 'finished'
[2025-04-20 07:39:52] 2025-04-20 05:39:29,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,633 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-20 07:39:52] 2025-04-20 05:39:31,633 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607874796/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,633 | INFO     | extracted standard info from prmon json
[2025-04-20 07:39:52] 2025-04-20 05:39:31,633 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 07:39:52] 2025-04-20 05:39:31,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 07:39:52] 2025-04-20 05:39:31,634 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 07:39:52] 2025-04-20 05:39:31,634 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 07:39:52] 2025-04-20 05:39:31,634 | INFO     | fitting pss+swap vs Time
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | sum of square deviations: 211285822.0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | sum of deviations: 794796663.5000005
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | mean x: 1745124767.5
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | mean y: 2400462.1704545454
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | -- intersect: -6562258394.116713
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | intersect: -6562258394.116713
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | chi2: 1.5390273494806201
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | -- intersect: -6562258394.116713
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | current memory leak: 3.76 B/s (using 88 data points, chi2=1.54)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | ..............................
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . Timing measurements:
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . get job = 0 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . initial setup = 1 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . payload setup = 6 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . stage-in = 0 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . payload execution = 5753 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . stage-out = 0 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | . log creation = 0 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,635 | INFO     | ..............................
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | 
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | job summary report
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | --------------------------------------------------
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | PanDA job id: 6607874796
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | task id: 44075483
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | errors: (none)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | pilot state: finished 
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | transexitcode: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | exeerrorcode: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | exeerrordiag: 
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | exitcode: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | exitmsg: OK
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | cpuconsumptiontime: 15351 s
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | nevents: 400
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | neventsw: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | pid: 1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | pgrp: 1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | corecount: 3
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | event service: False
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | sizes: {0: 2426821, 6: 2427027, 11: 2427055, 5763: 2453695, 5764: 2462698, 5772: 2462812}
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | --------------------------------------------------
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | 
[2025-04-20 07:39:52] 2025-04-20 05:39:31,729 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | job 6607874796 has completed (purged errors)
[2025-04-20 07:39:52] 2025-04-20 05:39:31,744 | INFO     | overall cleanup function is called
[2025-04-20 07:39:52] 2025-04-20 05:39:32,750 | INFO     | --- collectZombieJob: --- 10, [1406062]
[2025-04-20 07:39:52] 2025-04-20 05:39:32,751 | INFO     | zombie collector waiting for pid 1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:32,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 07:39:52] 2025-04-20 05:39:32,751 | INFO     | collected zombie processes
[2025-04-20 07:39:52] 2025-04-20 05:39:32,752 | INFO     | will attempt to kill all subprocesses of pid=1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:32,790 | INFO     | process IDs to be killed: [1406062] (in reverse order)
[2025-04-20 07:39:52] 2025-04-20 05:39:32,816 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 07:39:52] 2025-04-20 05:39:32,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 07:39:52] 2025-04-20 05:39:32,817 | INFO     | did not find any defunct processes belonging to 1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:32,818 | INFO     | did not find any defunct processes belonging to 1406062
[2025-04-20 07:39:52] 2025-04-20 05:39:32,818 | INFO     | ready for new job
[2025-04-20 07:39:52] 2025-04-20 05:39:32,818 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 07:39:52] 2025-04-20 05:39:32,819 | INFO     | **************************************
[2025-04-20 07:39:52] 2025-04-20 05:39:32,819 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 07:39:52] 2025-04-20 05:39:32,819 | INFO     | **************************************
[2025-04-20 07:39:52] 2025-04-20 05:39:32,819 | INFO     | 
[2025-04-20 07:39:52] 2025-04-20 05:39:32,820 | INFO     | architecture information:
[2025-04-20 07:39:52] 2025-04-20 05:39:32,820 | INFO     | executing command: cat /etc/os-release
[2025-04-20 07:39:52] 2025-04-20 05:39:32,829 | INFO     | cat /etc/os-release:
[2025-04-20 07:39:52] NAME="CentOS Linux"
[2025-04-20 07:39:52] VERSION="7 (Core)"
[2025-04-20 07:39:52] ID="centos"
[2025-04-20 07:39:52] ID_LIKE="rhel fedora"
[2025-04-20 07:39:52] VERSION_ID="7"
[2025-04-20 07:39:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 07:39:52] ANSI_COLOR="0;31"
[2025-04-20 07:39:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 07:39:52] HOME_URL="https://www.centos.org/"
[2025-04-20 07:39:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 07:39:52] 
[2025-04-20 07:39:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 07:39:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 07:39:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 07:39:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 07:39:52] 
[2025-04-20 07:39:52] 2025-04-20 05:39:32,829 | INFO     | **************************************
[2025-04-20 07:39:52] 2025-04-20 05:39:32,968 | INFO     | 5790s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-20 07:39:52] 2025-04-20 05:39:33,332 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-20 07:39:52] 2025-04-20 05:39:33,346 | INFO     | sufficient remaining disk space (327827849216 B)
[2025-04-20 07:39:52] 2025-04-20 05:39:33,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 07:39:52] 2025-04-20 05:39:33,346 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 07:39:52] 2025-04-20 05:39:33,346 | INFO     | update_server=False
[2025-04-20 07:39:52] 2025-04-20 05:39:33,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 07:39:52] 2025-04-20 05:39:33,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 07:39:52] 2025-04-20 05:39:33,366 | INFO     | all job control threads have been joined
[2025-04-20 07:39:52] 2025-04-20 05:39:33,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 07:39:52] 2025-04-20 05:39:33,437 | INFO     | aborting loop
[2025-04-20 07:39:52] 2025-04-20 05:39:33,974 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 07:39:52] 2025-04-20 05:39:33,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 07:39:52] 2025-04-20 05:39:33,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 07:39:52] 2025-04-20 05:39:34,060 | INFO     | all data control threads have been joined
[2025-04-20 07:39:52] 2025-04-20 05:39:34,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 07:39:52] 2025-04-20 05:39:34,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 07:39:52] 2025-04-20 05:39:34,350 | INFO     | [job] queue monitor thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:34,350 | INFO     | [job] retrieve thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:34,371 | INFO     | [job] control thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:34,443 | INFO     | [job] job monitor thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:34,674 | INFO     | all payload control threads have been joined
[2025-04-20 07:39:52] 2025-04-20 05:39:34,771 | INFO     | [payload] failed_post thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,066 | INFO     | [data] control thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,277 | INFO     | [data] copytool_in thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,356 | INFO     | [payload] validate_post thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,677 | INFO     | [payload] control thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,680 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,680 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,832 | INFO     | [job] validate thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:35,833 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:36,281 | INFO     | [data] copytool_out thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:38,307 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:44,050 | INFO     | job.realtimelogging is not enabled
[2025-04-20 07:39:52] 2025-04-20 05:39:45,055 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 07:39:52] 2025-04-20 05:39:47,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594173761344)>', '<ExcThread(monitor, started 140593405622016)>']
[2025-04-20 07:39:52] 2025-04-20 05:39:48,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 07:39:52] 2025-04-20 05:39:48,049 | INFO     | [monitor] control thread has ended
[2025-04-20 07:39:52] 2025-04-20 05:39:52,077 | INFO     | all workflow threads have been joined
[2025-04-20 07:39:52] 2025-04-20 05:39:52,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 07:39:52] 2025-04-20 05:39:52,078 | INFO     | traces error code: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:52,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 07:39:52] 2025-04-20 05:39:52,126 [wrapper] ==== pilot stdout END ====
[2025-04-20 07:39:52] 2025-04-20 05:39:52,129 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 07:39:52] 2025-04-20 05:39:52,132 [wrapper] pilotpid: 1399623
[2025-04-20 07:39:52] 2025-04-20 05:39:52,135 [wrapper] Pilot exit status: 0
[2025-04-20 07:39:52] 2025-04-20 05:39:52,142 [wrapper] pandaids: 6607874796
[2025-04-20 07:39:52] 2025-04-20 05:39:52,159 [wrapper] cleanup supervisor_pilot 1418512 1399624
[2025-04-20 07:39:52] 2025-04-20 05:39:52,162 [wrapper] Test setup, not cleaning
[2025-04-20 07:39:52] 2025-04-20 05:39:52,165 [wrapper] apfmon messages muted
[2025-04-20 07:39:52] 2025-04-20 05:39:52,167 [wrapper] ==== wrapper stdout END ====
[2025-04-20 07:39:52] 2025-04-20 05:39:52,170 [wrapper] ==== wrapper stderr END ====
[2025-04-20 07:39:52]  *** Error codes and diagnostics ***
[2025-04-20 07:39:52]     "exeErrorCode": 0,
[2025-04-20 07:39:52]     "exeErrorDiag": "",
[2025-04-20 07:39:52]     "pilotErrorCode": 0,
[2025-04-20 07:39:52]     "pilotErrorDiag": "",
[2025-04-20 07:39:52]  *** Listing of results directory ***
[2025-04-20 07:39:52] total 409600
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc    495897 Apr 19 17:39 pilot3.tar.gz
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc      5111 Apr 19 18:03 queuedata.json
[2025-04-20 07:39:52] -rwx------ 1 boinc boinc     37140 Apr 19 18:04 runpilot2-wrapper.sh
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc       100 Apr 20 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 07:39:52] -rwxr-xr-x 1 boinc boinc      7986 Apr 20 06:02 run_atlas
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc       105 Apr 20 06:02 job.xml
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc 220499110 Apr 20 06:02 EVNT.44075481._003304.pool.root.1
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc      6683 Apr 20 06:02 init_data.xml
[2025-04-20 07:39:52] drwxrwx--x 2 boinc boinc      4096 Apr 20 06:02 shared
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc    508891 Apr 20 06:02 input.tar.gz
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc     17569 Apr 20 06:02 start_atlas.sh
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc         0 Apr 20 06:02 boinc_lockfile
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc      2576 Apr 20 06:02 pandaJob.out
[2025-04-20 07:39:52] -rw------- 1 boinc boinc       424 Apr 20 06:02 setup.sh.local
[2025-04-20 07:39:52] -rw------- 1 boinc boinc    991300 Apr 20 06:03 agis_schedconf.cvmfs.json
[2025-04-20 07:39:52] -rw------- 1 boinc boinc   1618536 Apr 20 06:03 agis_ddmendpoints.agis.ALL.json
[2025-04-20 07:39:52] drwx------ 4 boinc boinc      4096 Apr 20 06:03 pilot3
[2025-04-20 07:39:52] -rw------- 1 boinc boinc 193507328 Apr 20 07:39 HITS.44075483._085206.pool.root.1
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc       529 Apr 20 07:39 boinc_task_state.xml
[2025-04-20 07:39:52] -rw------- 1 boinc boinc      1018 Apr 20 07:39 memory_monitor_summary.json
[2025-04-20 07:39:52] -rw------- 1 boinc boinc    223382 Apr 20 07:39 log.44075483._085206.job.log.tgz.1
[2025-04-20 07:39:52] -rw------- 1 boinc boinc      7661 Apr 20 07:39 heartbeat.json
[2025-04-20 07:39:52] -rw------- 1 boinc boinc        95 Apr 20 07:39 pilot_heartbeat.json
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc      8192 Apr 20 07:39 boinc_mmap_file
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc        27 Apr 20 07:39 wrapper_checkpoint.txt
[2025-04-20 07:39:52] -rw------- 1 boinc boinc      4544 Apr 20 07:39 pilotlog.txt
[2025-04-20 07:39:52] -rw------- 1 boinc boinc    554240 Apr 20 07:39 log.44075483._085206.job.log.1
[2025-04-20 07:39:52] -rw------- 1 boinc boinc       357 Apr 20 07:39 output.list
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc       620 Apr 20 07:39 runtime_log
[2025-04-20 07:39:52] -rw------- 1 boinc boinc    798720 Apr 20 07:39 result.tar.gz
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc     11119 Apr 20 07:39 runtime_log.err
[2025-04-20 07:39:52] -rw------- 1 boinc boinc       662 Apr 20 07:39 qUZMDmMrPQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmTLiLDm4BSoWn.diag
[2025-04-20 07:39:52] -rw-r--r-- 1 boinc boinc     21325 Apr 20 07:39 stderr.txt
[2025-04-20 07:39:52] HITS file was successfully produced:
[2025-04-20 07:39:52] -rw------- 1 boinc boinc 193507328 Apr 20 07:39 shared/HITS.pool.root.1
[2025-04-20 07:39:52]  *** Contents of shared directory: ***
[2025-04-20 07:39:52] total 405612
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc 220499110 Apr 20 06:02 ATLAS.root_0
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc    508891 Apr 20 06:02 input.tar.gz
[2025-04-20 07:39:52] -rw-r--r-- 2 boinc boinc     17569 Apr 20 06:02 start_atlas.sh
[2025-04-20 07:39:52] -rw------- 1 boinc boinc 193507328 Apr 20 07:39 HITS.pool.root.1
[2025-04-20 07:39:52] -rw------- 1 boinc boinc    798720 Apr 20 07:39 result.tar.gz
07:39:54 (1395968): run_atlas exited; CPU time 15380.488956
07:39:54 (1395968): called boinc_finish(0)

</stderr_txt>
]]>

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