Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:46:24 (409403): wrapper (7.7.26015): starting
21:46:24 (409403): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 21:46:24] Arguments: --nthreads 4
[2025-04-19 21:46:24] Threads: 4
[2025-04-19 21:46:24] Checking for CVMFS
[2025-04-19 21:46:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 21:46:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 21:46:24] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 21:46:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 21:46:24] 2.9.2.0 3016 738 83288 145049 2 187 36123666 36864001 0 130560 0 1056969 99.996 161967 27180 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 21:46:24] CVMFS is ok
[2025-04-19 21:46:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 21:46:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 21:46:24] Further information can be found at the LHC@home message board.
[2025-04-19 21:46:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 21:46:24] Checking for apptainer binary...
[2025-04-19 21:46:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 21:46:24] Running /usr/bin/apptainer --version
[2025-04-19 21:46:24] apptainer version 1.3.6-6.1
[2025-04-19 21:46:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 21:46:24] belleA253b
[2025-04-19 21:46:24] apptainer works
[2025-04-19 21:46:24] Set ATHENA_PROC_NUMBER=4
[2025-04-19 21:46:24] Set ATHENA_CORE_NUMBER=4
[2025-04-19 21:46:24] Starting ATLAS job with PandaID=6607790579
[2025-04-19 21:46:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 21:59:10]  *** The last 200 lines of the pilot log: ***
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | wrong length of table data, x=[1745092321.0, 1745092382.0, 1745092443.0], y=[1424086.0, 1446693.0, 1446693.0] (must be same and length>=4)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . Timing measurements:
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . get job = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . initial setup = 1 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload setup = 4 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-in = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload execution = 598 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-out = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . log creation = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790579/pilotlog.txt
[2025-04-19 21:59:10] 2025-04-19 19:58:56,207 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-19 21:59:10] - Log from pilotlog.txt -
[2025-04-19 21:59:10] 2025-04-19 19:58:56,191 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 21:59:10] 2025-04-19 19:58:56,191 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607790579/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | INFO     | extracted standard info from prmon json
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | wrong length of table data, x=[1745092321.0, 1745092382.0, 1745092443.0], y=[1424086.0, 1446693.0, 1446693.0] (must be same and length>=4)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . Timing measurements:
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . get job = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . initial setup = 1 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload setup = 4 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-in = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload execution = 598 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-out = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . log creation = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790579/pilotlog.txt
[2025-04-19 21:59:10] 2025-04-19 19:58:56,207 | WARNING  | 
[2025-04-19 21:59:10] [begin log extracts]
[2025-04-19 21:59:10] - Log from pilotlog.txt -
[2025-04-19 21:59:10] 2025-04-19 19:58:56,191 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 21:59:10] 2025-04-19 19:58:56,191 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607790579/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | INFO     | extracted standard info from prmon json
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:59:10] 2025-04-19 19:58:56,192 | WARNING  | wrong length of table data, x=[1745092321.0, 1745092382.0, 1745092443.0], y=[1424086.0, 1446693.0, 1446693.0] (must be same and length>=4)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . Timing measurements:
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . get job = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . initial setup = 1 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload setup = 4 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-in = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . payload execution = 598 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . stage-out = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | . log creation = 0 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | ..............................
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:59:10] 2025-04-19 19:58:56,193 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790579/pilotlog.txt
[2025-04-19 21:59:10] [end log extracts]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,208 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,208 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | job summary report
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | --------------------------------------------------
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | PanDA job id: 6607790579
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | task id: 44075483
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-19 19:56:46,068 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-19 21:59:10] 2025-04-19 19:58:56,249 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | pilot error code: 1328
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | pilot state: failed 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | transexitcode: 65
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | exeerrorcode: 0
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | exeerrordiag: 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | exitcode: 65
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | cpuconsumptiontime: 50 s
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | nevents: 0
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | neventsw: 0
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | pid: 419694
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | pgrp: 419694
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | corecount: 4
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | event service: False
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | sizes: {0: 2425995, 1: 2426854, 4: 2427060, 11: 2427088, 606: 2451518, 607: 2455759, 609: 2455943, 729: 2456113}
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | --------------------------------------------------
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | 
[2025-04-19 21:59:10] 2025-04-19 19:58:56,250 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 21:59:10] 2025-04-19 19:58:56,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | job 6607790579 has completed (purged errors)
[2025-04-19 21:59:10] 2025-04-19 19:58:56,271 | INFO     | overall cleanup function is called
[2025-04-19 21:59:10] 2025-04-19 19:58:57,278 | INFO     | --- collectZombieJob: --- 10, [419694]
[2025-04-19 21:59:10] 2025-04-19 19:58:57,278 | INFO     | zombie collector waiting for pid 419694
[2025-04-19 21:59:10] 2025-04-19 19:58:57,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 21:59:10] 2025-04-19 19:58:57,278 | INFO     | collected zombie processes
[2025-04-19 21:59:10] 2025-04-19 19:58:57,279 | INFO     | will attempt to kill all subprocesses of pid=419694
[2025-04-19 21:59:10] 2025-04-19 19:58:57,323 | INFO     | process IDs to be killed: [419694] (in reverse order)
[2025-04-19 21:59:10] 2025-04-19 19:58:57,359 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 21:59:10] 2025-04-19 19:58:57,359 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 21:59:10] 2025-04-19 19:58:57,361 | INFO     | did not find any defunct processes belonging to 419694
[2025-04-19 21:59:10] 2025-04-19 19:58:57,362 | INFO     | did not find any defunct processes belonging to 419694
[2025-04-19 21:59:10] 2025-04-19 19:58:57,362 | INFO     | ready for new job
[2025-04-19 21:59:10] 2025-04-19 19:58:57,362 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 21:59:10] 2025-04-19 19:58:57,363 | INFO     | **************************************
[2025-04-19 21:59:10] 2025-04-19 19:58:57,363 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 21:59:10] 2025-04-19 19:58:57,363 | INFO     | **************************************
[2025-04-19 21:59:10] 2025-04-19 19:58:57,363 | INFO     | 
[2025-04-19 21:59:10] 2025-04-19 19:58:57,364 | INFO     | architecture information:
[2025-04-19 21:59:10] 2025-04-19 19:58:57,364 | INFO     | executing command: cat /etc/os-release
[2025-04-19 21:59:10] 2025-04-19 19:58:57,379 | INFO     | cat /etc/os-release:
[2025-04-19 21:59:10] NAME="CentOS Linux"
[2025-04-19 21:59:10] VERSION="7 (Core)"
[2025-04-19 21:59:10] ID="centos"
[2025-04-19 21:59:10] ID_LIKE="rhel fedora"
[2025-04-19 21:59:10] VERSION_ID="7"
[2025-04-19 21:59:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 21:59:10] ANSI_COLOR="0;31"
[2025-04-19 21:59:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 21:59:10] HOME_URL="https://www.centos.org/"
[2025-04-19 21:59:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 21:59:10] 
[2025-04-19 21:59:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 21:59:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 21:59:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 21:59:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 21:59:10] 
[2025-04-19 21:59:10] 2025-04-19 19:58:57,379 | INFO     | **************************************
[2025-04-19 21:59:10] 2025-04-19 19:58:57,882 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 21:59:10] 2025-04-19 19:58:57,901 | INFO     | sufficient remaining disk space (319749619712 B)
[2025-04-19 21:59:10] 2025-04-19 19:58:57,901 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 21:59:10] 2025-04-19 19:58:57,901 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 21:59:10] 2025-04-19 19:58:57,901 | INFO     | update_server=False
[2025-04-19 21:59:10] 2025-04-19 19:58:57,901 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | INFO     | aborting loop
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 21:59:10] 2025-04-19 19:58:57,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 21:59:10] 2025-04-19 19:58:57,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 21:59:10] 2025-04-19 19:58:57,944 | INFO     | all data control threads have been joined
[2025-04-19 21:59:10] 2025-04-19 19:58:58,013 | INFO     | all job control threads have been joined
[2025-04-19 21:59:10] 2025-04-19 19:58:58,904 | INFO     | [job] job monitor thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:58,907 | INFO     | [job] retrieve thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:58,907 | INFO     | [job] queue monitor thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:58,950 | INFO     | [data] control thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,013 | INFO     | [payload] validate_post thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,018 | INFO     | [job] control thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,138 | INFO     | all payload control threads have been joined
[2025-04-19 21:59:10] 2025-04-19 19:58:59,374 | INFO     | [job] validate thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 21:59:10] 2025-04-19 19:58:59,493 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,538 | INFO     | [payload] failed_post thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,565 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:58:59,921 | INFO     | [data] copytool_out thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:00,143 | INFO     | [payload] control thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:00,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:00,245 | INFO     | [data] copytool_in thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:00,375 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:03,415 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 21:59:10] 2025-04-19 19:59:05,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456427468608)>', '<ExcThread(monitor, started 140455480121088)>']
[2025-04-19 21:59:10] 2025-04-19 19:59:05,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 21:59:10] 2025-04-19 19:59:05,945 | INFO     | [monitor] control thread has ended
[2025-04-19 21:59:10] 2025-04-19 19:59:10,416 | INFO     | all workflow threads have been joined
[2025-04-19 21:59:10] 2025-04-19 19:59:10,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 21:59:10] 2025-04-19 19:59:10,417 | INFO     | traces error code: 0
[2025-04-19 21:59:10] 2025-04-19 19:59:10,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 21:59:10] 2025-04-19 19:59:10,496 [wrapper] ==== pilot stdout END ====
[2025-04-19 21:59:10] 2025-04-19 19:59:10,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 21:59:10] 2025-04-19 19:59:10,505 [wrapper] pilotpid: 413121
[2025-04-19 21:59:10] 2025-04-19 19:59:10,509 [wrapper] Pilot exit status: 0
[2025-04-19 21:59:10] 2025-04-19 19:59:10,521 [wrapper] pandaids: 6607790579
[2025-04-19 21:59:10] 2025-04-19 19:59:10,544 [wrapper] cleanup supervisor_pilot  413127 413122
[2025-04-19 21:59:10] 2025-04-19 19:59:10,548 [wrapper] Test setup, not cleaning
[2025-04-19 21:59:10] 2025-04-19 19:59:10,552 [wrapper] apfmon messages muted
[2025-04-19 21:59:10] 2025-04-19 19:59:10,556 [wrapper] ==== wrapper stdout END ====
[2025-04-19 21:59:10] 2025-04-19 19:59:10,560 [wrapper] ==== wrapper stderr END ====
[2025-04-19 21:59:10]  *** Error codes and diagnostics ***
[2025-04-19 21:59:10]     "exeErrorCode": 0,
[2025-04-19 21:59:10]     "exeErrorDiag": "",
[2025-04-19 21:59:10]     "pilotErrorCode": 1305,
[2025-04-19 21:59:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2025-04-19 21:59:10]  *** Listing of results directory ***
[2025-04-19 21:59:10] total 220408
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc      5111 Apr 19 15:47 queuedata.json
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc    495897 Apr 19 15:48 pilot3.tar.gz
[2025-04-19 21:59:10] -rwx------ 1 boinc boinc     37140 Apr 19 15:48 runpilot2-wrapper.sh
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc       100 Apr 19 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 21:59:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 21:46 run_atlas
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc       105 Apr 19 21:46 job.xml
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc 221457225 Apr 19 21:46 EVNT.44075481._003245.pool.root.1
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc      6863 Apr 19 21:46 init_data.xml
[2025-04-19 21:59:10] drwxrwx--x 2 boinc boinc      4096 Apr 19 21:46 shared
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc    508891 Apr 19 21:46 input.tar.gz
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc     17569 Apr 19 21:46 start_atlas.sh
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc         0 Apr 19 21:46 boinc_lockfile
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc      2578 Apr 19 21:46 pandaJob.out
[2025-04-19 21:59:10] -rw------- 1 boinc boinc       424 Apr 19 21:46 setup.sh.local
[2025-04-19 21:59:10] -rw------- 1 boinc boinc    991284 Apr 19 21:46 agis_schedconf.cvmfs.json
[2025-04-19 21:59:10] -rw------- 1 boinc boinc   1618536 Apr 19 21:46 agis_ddmendpoints.agis.ALL.json
[2025-04-19 21:59:10] drwx------ 4 boinc boinc      4096 Apr 19 21:46 pilot3
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc       526 Apr 19 21:56 boinc_task_state.xml
[2025-04-19 21:59:10] -rw------- 1 boinc boinc       993 Apr 19 21:56 memory_monitor_summary.json
[2025-04-19 21:59:10] -rw------- 1 boinc boinc     67067 Apr 19 21:56 log.44075483._083678.job.log.tgz.1
[2025-04-19 21:59:10] -rw------- 1 boinc boinc        95 Apr 19 21:58 pilot_heartbeat.json
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc      8192 Apr 19 21:58 boinc_mmap_file
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc        23 Apr 19 21:58 wrapper_checkpoint.txt
[2025-04-19 21:59:10] -rw------- 1 boinc boinc      8459 Apr 19 21:58 heartbeat.json
[2025-04-19 21:59:10] -rw------- 1 boinc boinc      4480 Apr 19 21:59 pilotlog.txt
[2025-04-19 21:59:10] -rw------- 1 boinc boinc    121031 Apr 19 21:59 log.44075483._083678.job.log.1
[2025-04-19 21:59:10] -rw------- 1 boinc boinc       188 Apr 19 21:59 output.list
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc       620 Apr 19 21:59 runtime_log
[2025-04-19 21:59:10] -rw------- 1 boinc boinc    204800 Apr 19 21:59 result.tar.gz
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc     10966 Apr 19 21:59 runtime_log.err
[2025-04-19 21:59:10] -rw------- 1 boinc boinc       653 Apr 19 21:59 4cJKDm1jNQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmU4hLDmuHJ2tm.diag
[2025-04-19 21:59:10] -rw-r--r-- 1 boinc boinc     21901 Apr 19 21:59 stderr.txt
[2025-04-19 21:59:10] No HITS result produced
[2025-04-19 21:59:10]  *** Contents of shared directory: ***
[2025-04-19 21:59:10] total 216992
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc 221457225 Apr 19 21:46 ATLAS.root_0
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc    508891 Apr 19 21:46 input.tar.gz
[2025-04-19 21:59:10] -rw-r--r-- 2 boinc boinc     17569 Apr 19 21:46 start_atlas.sh
[2025-04-19 21:59:10] -rw------- 1 boinc boinc    204800 Apr 19 21:59 result.tar.gz
21:59:11 (409403): run_atlas exited; CPU time 48.017619
21:59:11 (409403): called boinc_finish(0)

</stderr_txt>
]]>

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