Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:32:57 (389681): wrapper (7.7.26015): starting
21:32:57 (389681): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 21:32:57] Arguments: --nthreads 4
[2025-04-19 21:32:57] Threads: 4
[2025-04-19 21:32:57] Checking for CVMFS
[2025-04-19 21:32:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 21:32:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 21:32:58] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 21:32:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 21:32:58] 2.9.2.0 3016 725 82512 145049 0 56 36122698 36864001 0 130560 0 1001280 99.995 161896 27204 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 21:32:58] CVMFS is ok
[2025-04-19 21:32:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 21:32:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 21:32:58] Further information can be found at the LHC@home message board.
[2025-04-19 21:32:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 21:32:58] Checking for apptainer binary...
[2025-04-19 21:32:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 21:32:58] Running /usr/bin/apptainer --version
[2025-04-19 21:32:58] apptainer version 1.3.6-6.1
[2025-04-19 21:32:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 21:32:58] belleA253b
[2025-04-19 21:32:58] apptainer works
[2025-04-19 21:32:58] Set ATHENA_PROC_NUMBER=4
[2025-04-19 21:32:58] Set ATHENA_CORE_NUMBER=4
[2025-04-19 21:32:58] Starting ATLAS job with PandaID=6607790397
[2025-04-19 21:32:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 21:46:20]  *** The last 200 lines of the pilot log: ***
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | wrong length of table data, x=[1745091514.0, 1745091575.0, 1745091636.0, 1745091697.0], y=[1424950.0, 1449786.0, 1449770.0, 1449634.0] (must be same and length>=4)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . Timing measurements:
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . get job = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . initial setup = 1 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . payload setup = 4 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . stage-in = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . payload execution = 637 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . stage-out = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . log creation = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790397/pilotlog.txt
[2025-04-19 21:46:20] 2025-04-19 19:46:05,187 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-19 21:46:20] - Log from pilotlog.txt -
[2025-04-19 21:46:20] 2025-04-19 19:46:05,171 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 21:46:20] 2025-04-19 19:46:05,171 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607790397/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | extracted standard info from prmon json
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | wrong length of table data, x=[1745091514.0, 1745091575.0, 1745091636.0, 1745091697.0], y=[1424950.0, 1449786.0, 1449770.0, 1449634.0] (must be same and length>=4)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . Timing measurements:
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . get job = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . initial setup = 1 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . payload setup = 4 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . stage-in = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . payload execution = 637 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . stage-out = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . log creation = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790397/pilotlog.txt
[2025-04-19 21:46:20] 2025-04-19 19:46:05,187 | WARNING  | 
[2025-04-19 21:46:20] [begin log extracts]
[2025-04-19 21:46:20] - Log from pilotlog.txt -
[2025-04-19 21:46:20] 2025-04-19 19:46:05,171 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 21:46:20] 2025-04-19 19:46:05,171 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607790397/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | extracted standard info from prmon json
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | WARNING  | wrong length of table data, x=[1745091514.0, 1745091575.0, 1745091636.0, 1745091697.0], y=[1424950.0, 1449786.0, 1449770.0, 1449634.0] (must be same and length>=4)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . Timing measurements:
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . get job = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . initial setup = 1 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . payload setup = 4 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,172 | INFO     | . stage-in = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . payload execution = 637 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . stage-out = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | . log creation = 0 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | ..............................
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 21:46:20] 2025-04-19 19:46:05,173 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607790397/pilotlog.txt
[2025-04-19 21:46:20] [end log extracts]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,187 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,188 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | job summary report
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | --------------------------------------------------
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | PanDA job id: 6607790397
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | task id: 44075483
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-19 19:43:58,323 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "Co
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | pilot error code: 1328
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "C
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,229 | INFO     | pilot state: failed 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | transexitcode: 65
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | exeerrorcode: 0
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | exeerrordiag: 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | exitcode: 65
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | cpuconsumptiontime: 88 s
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | nevents: 0
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | neventsw: 0
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | pid: 399989
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | pgrp: 399989
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | corecount: 4
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | event service: False
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | sizes: {0: 2426827, 4: 2427033, 11: 2427061, 646: 2456908, 765: 2457022}
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | --------------------------------------------------
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | 
[2025-04-19 21:46:20] 2025-04-19 19:46:05,230 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | job 6607790397 has completed (purged errors)
[2025-04-19 21:46:20] 2025-04-19 19:46:05,251 | INFO     | overall cleanup function is called
[2025-04-19 21:46:20] 2025-04-19 19:46:06,257 | INFO     | --- collectZombieJob: --- 10, [399989]
[2025-04-19 21:46:20] 2025-04-19 19:46:06,258 | INFO     | zombie collector waiting for pid 399989
[2025-04-19 21:46:20] 2025-04-19 19:46:06,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 21:46:20] 2025-04-19 19:46:06,258 | INFO     | collected zombie processes
[2025-04-19 21:46:20] 2025-04-19 19:46:06,258 | INFO     | will attempt to kill all subprocesses of pid=399989
[2025-04-19 21:46:20] 2025-04-19 19:46:06,303 | INFO     | process IDs to be killed: [399989] (in reverse order)
[2025-04-19 21:46:20] 2025-04-19 19:46:06,339 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 21:46:20] 2025-04-19 19:46:06,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 21:46:20] 2025-04-19 19:46:06,341 | INFO     | did not find any defunct processes belonging to 399989
[2025-04-19 21:46:20] 2025-04-19 19:46:06,342 | INFO     | did not find any defunct processes belonging to 399989
[2025-04-19 21:46:20] 2025-04-19 19:46:06,342 | INFO     | ready for new job
[2025-04-19 21:46:20] 2025-04-19 19:46:06,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 21:46:20] 2025-04-19 19:46:06,343 | INFO     | **************************************
[2025-04-19 21:46:20] 2025-04-19 19:46:06,343 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 21:46:20] 2025-04-19 19:46:06,343 | INFO     | **************************************
[2025-04-19 21:46:20] 2025-04-19 19:46:06,343 | INFO     | 
[2025-04-19 21:46:20] 2025-04-19 19:46:06,344 | INFO     | architecture information:
[2025-04-19 21:46:20] 2025-04-19 19:46:06,344 | INFO     | executing command: cat /etc/os-release
[2025-04-19 21:46:20] 2025-04-19 19:46:06,359 | INFO     | cat /etc/os-release:
[2025-04-19 21:46:20] NAME="CentOS Linux"
[2025-04-19 21:46:20] VERSION="7 (Core)"
[2025-04-19 21:46:20] ID="centos"
[2025-04-19 21:46:20] ID_LIKE="rhel fedora"
[2025-04-19 21:46:20] VERSION_ID="7"
[2025-04-19 21:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 21:46:20] ANSI_COLOR="0;31"
[2025-04-19 21:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 21:46:20] HOME_URL="https://www.centos.org/"
[2025-04-19 21:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 21:46:20] 
[2025-04-19 21:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 21:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 21:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 21:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 21:46:20] 
[2025-04-19 21:46:20] 2025-04-19 19:46:06,359 | INFO     | **************************************
[2025-04-19 21:46:20] 2025-04-19 19:46:06,862 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | INFO     | sufficient remaining disk space (319748571136 B)
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | INFO     | update_server=False
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 21:46:20] 2025-04-19 19:46:06,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 21:46:20] 2025-04-19 19:46:06,883 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 21:46:20] 2025-04-19 19:46:06,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 21:46:20] 2025-04-19 19:46:06,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 21:46:20] 2025-04-19 19:46:07,200 | INFO     | all payload control threads have been joined
[2025-04-19 21:46:20] 2025-04-19 19:46:07,347 | INFO     | all job control threads have been joined
[2025-04-19 21:46:20] 2025-04-19 19:46:07,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 21:46:20] 2025-04-19 19:46:07,575 | INFO     | aborting loop
[2025-04-19 21:46:20] 2025-04-19 19:46:07,819 | INFO     | all data control threads have been joined
[2025-04-19 21:46:20] 2025-04-19 19:46:07,888 | INFO     | [job] retrieve thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:07,888 | INFO     | [job] queue monitor thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,206 | INFO     | [payload] control thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,290 | INFO     | [data] copytool_in thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,353 | INFO     | [job] control thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,546 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,581 | INFO     | [job] job monitor thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,724 | INFO     | [payload] failed_post thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,825 | INFO     | [data] control thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,889 | INFO     | [data] copytool_out thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:08,931 | INFO     | [job] validate thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:09,029 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:09,112 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:09,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 21:46:20] 2025-04-19 19:46:09,230 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:09,337 | INFO     | [payload] validate_post thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:13,195 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 21:46:20] 2025-04-19 19:46:14,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428326037312)>', '<ExcThread(monitor, started 140427227289344)>']
[2025-04-19 21:46:20] 2025-04-19 19:46:14,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 21:46:20] 2025-04-19 19:46:14,925 | INFO     | [monitor] control thread has ended
[2025-04-19 21:46:20] 2025-04-19 19:46:19,885 | INFO     | all workflow threads have been joined
[2025-04-19 21:46:20] 2025-04-19 19:46:19,885 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 21:46:20] 2025-04-19 19:46:19,886 | INFO     | traces error code: 0
[2025-04-19 21:46:20] 2025-04-19 19:46:19,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 21:46:20] 2025-04-19 19:46:19,965 [wrapper] ==== pilot stdout END ====
[2025-04-19 21:46:20] 2025-04-19 19:46:19,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 21:46:20] 2025-04-19 19:46:19,974 [wrapper] pilotpid: 393407
[2025-04-19 21:46:20] 2025-04-19 19:46:19,979 [wrapper] Pilot exit status: 0
[2025-04-19 21:46:20] 2025-04-19 19:46:19,992 [wrapper] pandaids: 6607790397
[2025-04-19 21:46:20] 2025-04-19 19:46:20,015 [wrapper] cleanup supervisor_pilot  393413 393408
[2025-04-19 21:46:20] 2025-04-19 19:46:20,020 [wrapper] Test setup, not cleaning
[2025-04-19 21:46:20] 2025-04-19 19:46:20,024 [wrapper] apfmon messages muted
[2025-04-19 21:46:20] 2025-04-19 19:46:20,029 [wrapper] ==== wrapper stdout END ====
[2025-04-19 21:46:20] 2025-04-19 19:46:20,032 [wrapper] ==== wrapper stderr END ====
[2025-04-19 21:46:20]  *** Error codes and diagnostics ***
[2025-04-19 21:46:20]     "exeErrorCode": 0,
[2025-04-19 21:46:20]     "exeErrorDiag": "",
[2025-04-19 21:46:20]     "pilotErrorCode": 1305,
[2025-04-19 21:46:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-04-19 21:46:20]  *** Listing of results directory ***
[2025-04-19 21:46:20] total 221388
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc    503527 Apr  3 09:42 pilot3.tar.gz
[2025-04-19 21:46:20] -rwx------ 1 boinc boinc     37140 Apr 19 15:36 runpilot2-wrapper.sh
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc      5111 Apr 19 15:36 queuedata.json
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc       100 Apr 19 21:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 21:46:20] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 21:32 run_atlas
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc       105 Apr 19 21:32 job.xml
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc 222385339 Apr 19 21:32 EVNT.44075481._003239.pool.root.1
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc      6863 Apr 19 21:32 init_data.xml
[2025-04-19 21:46:20] drwxrwx--x 2 boinc boinc      4096 Apr 19 21:32 shared
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc    517105 Apr 19 21:32 input.tar.gz
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc     17569 Apr 19 21:32 start_atlas.sh
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc         0 Apr 19 21:32 boinc_lockfile
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc      2579 Apr 19 21:32 pandaJob.out
[2025-04-19 21:46:20] -rw------- 1 boinc boinc       424 Apr 19 21:32 setup.sh.local
[2025-04-19 21:46:20] -rw------- 1 boinc boinc    991284 Apr 19 21:33 agis_schedconf.cvmfs.json
[2025-04-19 21:46:20] -rw------- 1 boinc boinc   1618536 Apr 19 21:33 agis_ddmendpoints.agis.ALL.json
[2025-04-19 21:46:20] drwx------ 4 boinc boinc      4096 Apr 19 21:33 pilot3
[2025-04-19 21:46:20] -rw------- 1 boinc boinc      1009 Apr 19 21:44 memory_monitor_summary.json
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc       526 Apr 19 21:44 boinc_task_state.xml
[2025-04-19 21:46:20] -rw------- 1 boinc boinc     92185 Apr 19 21:44 log.44075483._083524.job.log.tgz.1
[2025-04-19 21:46:20] -rw------- 1 boinc boinc        95 Apr 19 21:45 pilot_heartbeat.json
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc      8192 Apr 19 21:45 boinc_mmap_file
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc        23 Apr 19 21:45 wrapper_checkpoint.txt
[2025-04-19 21:46:20] -rw------- 1 boinc boinc      8940 Apr 19 21:46 heartbeat.json
[2025-04-19 21:46:20] -rw------- 1 boinc boinc      4480 Apr 19 21:46 pilotlog.txt
[2025-04-19 21:46:20] -rw------- 1 boinc boinc    126162 Apr 19 21:46 log.44075483._083524.job.log.1
[2025-04-19 21:46:20] -rw------- 1 boinc boinc       188 Apr 19 21:46 output.list
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc       620 Apr 19 21:46 runtime_log
[2025-04-19 21:46:20] -rw------- 1 boinc boinc    235520 Apr 19 21:46 result.tar.gz
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc     10966 Apr 19 21:46 runtime_log.err
[2025-04-19 21:46:20] -rw------- 1 boinc boinc       653 Apr 19 21:46 iACLDm7XNQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmc2hLDmDBphEo.diag
[2025-04-19 21:46:20] -rw-r--r-- 1 boinc boinc     22196 Apr 19 21:46 stderr.txt
[2025-04-19 21:46:20] No HITS result produced
[2025-04-19 21:46:20]  *** Contents of shared directory: ***
[2025-04-19 21:46:20] total 217940
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc 222385339 Apr 19 21:32 ATLAS.root_0
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc    517105 Apr 19 21:32 input.tar.gz
[2025-04-19 21:46:20] -rw-r--r-- 2 boinc boinc     17569 Apr 19 21:32 start_atlas.sh
[2025-04-19 21:46:20] -rw------- 1 boinc boinc    235520 Apr 19 21:46 result.tar.gz
21:46:21 (389681): run_atlas exited; CPU time 83.121116
21:46:21 (389681): called boinc_finish(0)

</stderr_txt>
]]>

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