Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 15:13:13 (5708): Detected: vboxwrapper 26206
2025-04-19 15:13:13 (5708): Detected: BOINC client v7.22.2
2025-04-19 15:13:15 (5708): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-19 15:13:15 (5708): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 15:13:16 (5708): Create VM. (boinc_5fdcd6b78b4c1fc2, slot#1)
2025-04-19 15:13:17 (5708): Setting Memory Size for VM. (4700MB)
2025-04-19 15:13:17 (5708): Setting CPU Count for VM. (7)
2025-04-19 15:13:17 (5708): Setting Chipset Options for VM.
2025-04-19 15:13:18 (5708): Setting Graphics Controller Options for VM.
2025-04-19 15:13:18 (5708): Setting Boot Options for VM.
2025-04-19 15:13:18 (5708): Setting Network Configuration for NAT.
2025-04-19 15:13:19 (5708): Enabling VM Network Access.
2025-04-19 15:13:19 (5708): Disabling USB Support for VM.
2025-04-19 15:13:19 (5708): Disabling COM Port Support for VM.
2025-04-19 15:13:20 (5708): Disabling LPT Port Support for VM.
2025-04-19 15:13:20 (5708): Disabling Audio Support for VM.
2025-04-19 15:13:20 (5708): Disabling Clipboard Support for VM.
2025-04-19 15:13:21 (5708): Disabling Drag and Drop Support for VM.
2025-04-19 15:13:21 (5708): Adding storage controller(s) to VM.
2025-04-19 15:13:21 (5708): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 15:13:25 (5708): Adding VirtualBox Guest Additions to VM.
2025-04-19 15:13:25 (5708): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 15:13:25 (5708): forwarding host port 65044 to guest port 80
2025-04-19 15:13:26 (5708): Enabling remote desktop for VM.
2025-04-19 15:13:26 (5708): Required extension pack not installed, remote desktop not enabled.
2025-04-19 15:13:26 (5708): Enabling shared directory for VM.
2025-04-19 15:13:27 (5708): Starting VM using VBoxManage interface. (boinc_5fdcd6b78b4c1fc2, slot#1)
2025-04-19 15:13:38 (5708): Successfully started VM. (PID = '6416')
2025-04-19 15:13:38 (5708): Reporting VM Process ID to BOINC.
2025-04-19 15:13:38 (5708): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-19 15:13:38 (5708): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 15:13:38 (5708): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 15:13:38 (5708): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 15:13:38 (5708): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 15:13:38 (5708): Detected: Web Application Enabled (http://localhost:65044)
2025-04-19 15:13:38 (5708): Preference change detected
2025-04-19 15:13:38 (5708): Setting CPU throttle for VM. (75%)
2025-04-19 15:13:38 (5708): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 15:13:40 (5708): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 15:13:40 (5708): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 15:13:44 (5708): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 15:13:44 (5708): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 15:13:44 (5708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 15:14:42 (5708): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 15:14:42 (5708): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 15:15:17 (5708): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000296 main     Log opened 2025-04-19T15:15:14.288944000Z
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000527 main     OS Product: Linux
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000598 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000686 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000767 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000769 main     Process ID: 1333
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.000770 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 15:15:17 (5708): Guest Log: 00:00:00.002490 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 15:15:17 (5708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 15:15:17 (5708): Guest Log: [INFO] Mounting shared directory
2025-04-19 15:15:18 (5708): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 15:15:26 (5708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 15:15:26 (5708): Guest Log: [INFO] Detected branch: prod
2025-04-19 15:15:26 (5708): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 15:15:26 (5708): Guest Log: Copying input files
2025-04-19 15:15:27 (5708): Guest Log: 00:00:10.008741 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 354 178 268 000ns (GuestNow=1 745 090 068 474 771 000 ns GuestLast=1 745 075 714 296 503 000 ns fSetTimeLastLoop=true )
2025-04-19 15:15:30 (5708): Guest Log: Copied input files into RunAtlas.
2025-04-19 15:15:30 (5708): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 15:15:30 (5708): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 15:15:30 (5708): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 15:15:30 (5708): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 15:15:40 (5708): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 15:15:40 (5708): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 15:15:40 (5708): Guest Log: 2.6.3.0 1616 0 32200 145049 4 1 3119946 4096000 0 65024 0 0 n/a 1171 2094 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 15:15:53 (5708): Guest Log: copied the webapp to /var/www
2025-04-19 15:15:53 (5708): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-19 15:15:53 (5708): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-19 15:15:53 (5708): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 15:15:53 (5708): Guest Log:  *** Starting ATLAS job. (PandaID=6607073752 taskID=44178897) ***
2025-04-19 15:19:52 (5708): Preference change detected
2025-04-19 15:19:52 (5708): Setting CPU throttle for VM. (75%)
2025-04-19 15:19:52 (5708): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 15:20:10 (5708): Preference change detected
2025-04-19 15:20:10 (5708): Setting CPU throttle for VM. (75%)
2025-04-19 15:20:10 (5708): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 15:22:13 (5708): Guest Log:  *** Job finished ***
2025-04-19 15:22:13 (5708): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:03,793 | INFO     | [data] copytool_out thread has finished
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:04,493 | INFO     | [job] queue monitor thread has finished
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:07,639 | INFO     | [data] queue_monitor thread has finished
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:08,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806710794048)>', '<ExcThread(monitor, started 139806109574912)>']
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:08,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:08,915 | INFO     | [monitor] control thread has ended
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,367 | INFO     | all workflow threads have been joined
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,368 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,369 | INFO     | traces error code: 0
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,774 [wrapper] ==== pilot stdout END ====
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,796 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,818 [wrapper] pilotpid: 5963
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,841 [wrapper] Pilot exit status: 0
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:13,992 [wrapper] pandaids: 6607073752
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:14,088 [wrapper] cleanup supervisor_pilot  5969 5964
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:14,122 [wrapper] Test setup, not cleaning
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:14,138 [wrapper] apfmon messages muted
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:14,155 [wrapper] ==== wrapper stdout END ====
2025-04-19 15:22:13 (5708): Guest Log: 2025-04-19 19:21:14,171 [wrapper] ==== wrapper stderr END ====
2025-04-19 15:22:13 (5708): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 15:22:13 (5708): Guest Log:     "exeErrorCode": 0,
2025-04-19 15:22:13 (5708): Guest Log:     "exeErrorDiag": "",
2025-04-19 15:22:13 (5708): Guest Log:     "pilotErrorCode": 1305,
2025-04-19 15:22:13 (5708): Guest Log:     "pilotErrorDiag": "Failed to execute payload:/bin/bash: Sim_tf.py: command not found",
2025-04-19 15:22:13 (5708): Guest Log:  *** Listing of results directory ***
2025-04-19 15:22:13 (5708): Guest Log: total 3868
2025-04-19 15:22:13 (5708): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 19 00:12 pilot3.tar.gz
2025-04-19 15:22:13 (5708): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 19 00:20 runpilot2-wrapper.sh
2025-04-19 15:22:13 (5708): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 19 00:20 queuedata.json
2025-04-19 15:22:13 (5708): Guest Log: -rwxr-xr-x. 1 atlas atlas    6103 Apr 19 19:14 init_data.xml
2025-04-19 15:22:13 (5708): Guest Log: -rwxr-xr-x. 1 atlas atlas  508863 Apr 19 19:14 input.tar.gz
2025-04-19 15:22:13 (5708): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 19 19:14 start_atlas.sh
2025-04-19 15:22:13 (5708): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 19 19:14 EVNT.44178895._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 15:22:13 (5708): Guest Log: -rw-r--r--. 1 atlas atlas    2530 Apr 19 19:14 pandaJob.out
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas     424 Apr 19 19:14 setup.sh.local
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas  991284 Apr 19 19:16 agis_schedconf.cvmfs.json
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 19 19:16 agis_ddmendpoints.agis.ALL.json
2025-04-19 15:22:13 (5708): Guest Log: drwx------. 4 atlas atlas    4096 Apr 19 19:16 pilot3
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas    8328 Apr 19 19:18 log.44178897._000015.job.log.tgz.1
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas      95 Apr 19 19:20 pilot_heartbeat.json
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas    2213 Apr 19 19:20 heartbeat.json
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas    4536 Apr 19 19:21 pilotlog.txt
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas   84346 Apr 19 19:21 log.44178897._000015.job.log.1
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas     188 Apr 19 19:21 output.list
2025-04-19 15:22:13 (5708): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 19 19:21 runtime_log
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas  102400 Apr 19 19:21 result.tar.gz
2025-04-19 15:22:13 (5708): Guest Log: -rw-------. 1 atlas atlas     643 Apr 19 19:21 Wn5KDml7AQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmUp5KDm4A9dNo.diag
2025-04-19 15:22:13 (5708): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Apr 19 19:21 runtime_log.err
2025-04-19 15:22:13 (5708): Guest Log: Looking for outputfile HITS.44178897._000015.pool.root.1
2025-04-19 15:22:13 (5708): Guest Log: No HITS file was produced
2025-04-19 15:22:13 (5708): Guest Log: Successfully finished the ATLAS job!
2025-04-19 15:22:13 (5708): Guest Log: Copying the results back to the shared directory!
2025-04-19 15:22:14 (5708): Guest Log:  *** Contents of shared directory: ***
2025-04-19 15:22:14 (5708): Guest Log: total 206552
2025-04-19 15:22:14 (5708): Guest Log: -rwxrwxrwx. 1 root root 210865293 Apr 19 19:13 ATLAS.root_0
2025-04-19 15:22:14 (5708): Guest Log: -rwxrwxrwx. 1 root root      6103 Apr 19 19:13 init_data.xml
2025-04-19 15:22:14 (5708): Guest Log: -rwxrwxrwx. 1 root root    508863 Apr 19 16:34 input.tar.gz
2025-04-19 15:22:14 (5708): Guest Log: -rwxrwxrwx. 1 root root    102400 Apr 19  2025 result.tar.gz
2025-04-19 15:22:14 (5708): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 16:34 start_atlas.sh
2025-04-19 15:22:14 (5708): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 15:22:14 (5708): VM Completion File Detected.
2025-04-19 15:22:14 (5708): Powering off VM.
2025-04-19 15:22:15 (5708): Successfully stopped VM.
2025-04-19 15:22:15 (5708): Deregistering VM. (boinc_5fdcd6b78b4c1fc2, slot#1)
2025-04-19 15:22:15 (5708): Removing network bandwidth throttle group from VM.
2025-04-19 15:22:15 (5708): Removing VM from VirtualBox.
15:22:20 (5708): called boinc_finish(0)

</stderr_txt>
]]>

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