Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:08:22 (6200): wrapper (7.7.26015): starting
11:08:22 (6200): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 11:08:22] Arguments: --nthreads 12
[2025-04-19 11:08:22] Threads: 12
[2025-04-19 11:08:22] Checking for CVMFS
[2025-04-19 11:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 11:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 11:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 11:08:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 11:08:22] 2.11.2.0 5277 369620 166176 145041 0 58 10923694 20275201 1 130560 0 24518029 99.952 8077110 52816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 11:08:22] CVMFS is ok
[2025-04-19 11:08:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 11:08:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 11:08:22] Further information can be found at the LHC@home message board.
[2025-04-19 11:08:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 11:08:22] Checking for apptainer binary...
[2025-04-19 11:08:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 11:08:22] Running /usr/bin/apptainer --version
[2025-04-19 11:08:22] apptainer version 1.3.2-1.el7
[2025-04-19 11:08:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 11:08:24] c-205-15.aglt2.org
[2025-04-19 11:08:24] apptainer works
[2025-04-19 11:08:24] Set ATHENA_PROC_NUMBER=12
[2025-04-19 11:08:24] Set ATHENA_CORE_NUMBER=12
[2025-04-19 11:08:24] Starting ATLAS job with PandaID=6607788679
[2025-04-19 11:08:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 12:33:58]  *** The last 200 lines of the pilot log: ***
[2025-04-19 12:33:58]  mtime=0
[2025-04-19 12:33:58]  protocol_id=None
[2025-04-19 12:33:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 12:33:58]  replicas=None
[2025-04-19 12:33:58]  scope=mc23_13p6TeV
[2025-04-19 12:33:58]  status=None
[2025-04-19 12:33:58]  status_code=0
[2025-04-19 12:33:58]  storage_token=
[2025-04-19 12:33:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607788679/log.44075483._082628.job.log.tgz.1
[2025-04-19 12:33:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/73/log.44075483._082628.job.log.tgz.1
[2025-04-19 12:33:58]  workdir=None
[2025-04-19 12:33:58] ]
[2025-04-19 12:33:58] 2025-04-19 16:33:26,854 | INFO     | transferring file log.44075483._082628.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607788679/log.44075483._082628.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 12:33:58] 2025-04-19 16:33:26,854 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607788679/log.44075483._082628.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._082628.job
[2025-04-19 12:33:58] 2025-04-19 16:33:26,876 | INFO     | adding to output.list: log.44075483._082628.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/73/log.44075483._082628.job.log.tg
[2025-04-19 12:33:58] 2025-04-19 16:33:26,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 12:33:58] 2025-04-19 16:33:26,877 | INFO     | summary of transferred files:
[2025-04-19 12:33:58] 2025-04-19 16:33:26,877 | INFO     |  -- lfn=log.44075483._082628.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 12:33:58] 2025-04-19 16:33:26,878 | INFO     | stage-out finished correctly
[2025-04-19 12:33:58] 2025-04-19 16:33:28,061 | WARNING  | process 16163 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 12:33:58] 2025-04-19 16:33:28,061 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607788679/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 12:33:58] 2025-04-19 16:33:28,149 | INFO     | number of running child processes to parent process 16163: 1
[2025-04-19 12:33:58] 2025-04-19 16:33:28,149 | INFO     | maximum number of monitored processes: 6
[2025-04-19 12:33:58] 2025-04-19 16:33:30,053 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 12:33:58] 2025-04-19 16:33:30,652 | INFO     | monitor loop #380: job 0:6607788679 is in state 'finished'
[2025-04-19 12:33:58] 2025-04-19 16:33:30,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 12:33:58] 2025-04-19 16:33:32,443 | INFO     | job 6607788679 has state=finished
[2025-04-19 12:33:58] 2025-04-19 16:33:32,444 | INFO     | preparing for final server update for job 6607788679 in state='finished'
[2025-04-19 12:33:58] 2025-04-19 16:33:32,444 | INFO     | this job has now completed (state=finished)
[2025-04-19 12:33:58] 2025-04-19 16:33:32,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 12:33:58] 2025-04-19 16:33:32,445 | INFO     | log transfer has been attempted: DONE
[2025-04-19 12:33:58] 2025-04-19 16:33:32,445 | INFO     | job 6607788679 has finished - writing final server update
[2025-04-19 12:33:58] 2025-04-19 16:33:32,445 | INFO     | total number of processed events: 400 (read)
[2025-04-19 12:33:58] 2025-04-19 16:33:32,447 | INFO     | executing command: lscpu
[2025-04-19 12:33:58] 2025-04-19 16:33:32,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 12:33:58] 2025-04-19 16:33:33,155 | INFO     | monitor loop #381: job 0:6607788679 is in state 'finished'
[2025-04-19 12:33:58] 2025-04-19 16:33:33,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 12:33:58] 2025-04-19 16:33:35,666 | INFO     | monitor loop #382: job 0:6607788679 is in state 'finished'
[2025-04-19 12:33:58] 2025-04-19 16:33:35,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,232 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 12:33:58] 2025-04-19 16:33:37,232 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607788679/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,233 | INFO     | extracted standard info from prmon json
[2025-04-19 12:33:58] 2025-04-19 16:33:37,233 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 12:33:58] 2025-04-19 16:33:37,234 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 12:33:58] 2025-04-19 16:33:37,234 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 12:33:58] 2025-04-19 16:33:37,234 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 12:33:58] 2025-04-19 16:33:37,237 | INFO     | fitting pss+swap vs Time
[2025-04-19 12:33:58] 2025-04-19 16:33:37,237 | INFO     | sum of square deviations: 136095575.0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,238 | INFO     | sum of deviations: 24596764741.5
[2025-04-19 12:33:58] 2025-04-19 16:33:37,238 | INFO     | mean x: 1745077938.5
[2025-04-19 12:33:58] 2025-04-19 16:33:37,238 | INFO     | mean y: 2547332.75
[2025-04-19 12:33:58] 2025-04-19 16:33:37,238 | INFO     | -- intersect: -315388100077.10376
[2025-04-19 12:33:58] 2025-04-19 16:33:37,238 | INFO     | intersect: -315388100077.10376
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | chi2: 1.9233675537441495
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | -- intersect: -315388100077.10376
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | current memory leak: 180.73 B/s (using 76 data points, chi2=1.92)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | ..............................
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | . Timing measurements:
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | . get job = 0 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,239 | INFO     | . initial setup = 2 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | . payload setup = 7 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | . stage-in = 0 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | . payload execution = 5061 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | . stage-out = 0 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | . log creation = 0 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,240 | INFO     | ..............................
[2025-04-19 12:33:58] 2025-04-19 16:33:37,619 | INFO     | 
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | job summary report
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | --------------------------------------------------
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | PanDA job id: 6607788679
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | task id: 44075483
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | errors: (none)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | pilot state: finished 
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | transexitcode: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | exeerrorcode: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | exeerrordiag: 
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | exitcode: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,621 | INFO     | exitmsg: OK
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | cpuconsumptiontime: 47341 s
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | nevents: 400
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | neventsw: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | pid: 16163
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | pgrp: 16163
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | corecount: 12
[2025-04-19 12:33:58] 2025-04-19 16:33:37,622 | INFO     | event service: False
[2025-04-19 12:33:58] 2025-04-19 16:33:37,623 | INFO     | sizes: {0: 2426824, 5: 2427030, 11: 2427086, 5073: 2453263, 5074: 2462204, 5077: 2462260, 5084: 2462558}
[2025-04-19 12:33:58] 2025-04-19 16:33:37,623 | INFO     | --------------------------------------------------
[2025-04-19 12:33:58] 2025-04-19 16:33:37,623 | INFO     | 
[2025-04-19 12:33:58] 2025-04-19 16:33:37,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 12:33:58] 2025-04-19 16:33:37,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 12:33:58] 2025-04-19 16:33:37,699 | INFO     | job 6607788679 has completed (purged errors)
[2025-04-19 12:33:58] 2025-04-19 16:33:37,700 | INFO     | overall cleanup function is called
[2025-04-19 12:33:58] 2025-04-19 16:33:38,237 | INFO     | PID=9804 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-19 12:33:58] 2025-04-19 16:33:38,708 | INFO     | --- collectZombieJob: --- 10, [16163]
[2025-04-19 12:33:58] 2025-04-19 16:33:38,708 | INFO     | zombie collector waiting for pid 16163
[2025-04-19 12:33:58] 2025-04-19 16:33:38,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 12:33:58] 2025-04-19 16:33:38,708 | INFO     | collected zombie processes
[2025-04-19 12:33:58] 2025-04-19 16:33:38,708 | INFO     | will attempt to kill all subprocesses of pid=16163
[2025-04-19 12:33:58] 2025-04-19 16:33:38,798 | INFO     | process IDs to be killed: [16163] (in reverse order)
[2025-04-19 12:33:58] 2025-04-19 16:33:38,850 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 12:33:58] 2025-04-19 16:33:38,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 12:33:58] 2025-04-19 16:33:38,853 | INFO     | did not find any defunct processes belonging to 16163
[2025-04-19 12:33:58] 2025-04-19 16:33:38,857 | INFO     | did not find any defunct processes belonging to 16163
[2025-04-19 12:33:58] 2025-04-19 16:33:38,857 | INFO     | ready for new job
[2025-04-19 12:33:58] 2025-04-19 16:33:38,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 12:33:58] 2025-04-19 16:33:38,858 | INFO     | **************************************
[2025-04-19 12:33:58] 2025-04-19 16:33:38,859 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 12:33:58] 2025-04-19 16:33:38,859 | INFO     | **************************************
[2025-04-19 12:33:58] 2025-04-19 16:33:38,859 | INFO     | 
[2025-04-19 12:33:58] 2025-04-19 16:33:38,859 | INFO     | architecture information:
[2025-04-19 12:33:58] 2025-04-19 16:33:38,860 | INFO     | executing command: cat /etc/os-release
[2025-04-19 12:33:58] 2025-04-19 16:33:38,873 | INFO     | cat /etc/os-release:
[2025-04-19 12:33:58] NAME="CentOS Linux"
[2025-04-19 12:33:58] VERSION="7 (Core)"
[2025-04-19 12:33:58] ID="centos"
[2025-04-19 12:33:58] ID_LIKE="rhel fedora"
[2025-04-19 12:33:58] VERSION_ID="7"
[2025-04-19 12:33:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 12:33:58] ANSI_COLOR="0;31"
[2025-04-19 12:33:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 12:33:58] HOME_URL="https://www.centos.org/"
[2025-04-19 12:33:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 12:33:58] 
[2025-04-19 12:33:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 12:33:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 12:33:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 12:33:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 12:33:58] 
[2025-04-19 12:33:58] 2025-04-19 16:33:38,874 | INFO     | **************************************
[2025-04-19 12:33:58] 2025-04-19 16:33:39,377 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 12:33:58] 2025-04-19 16:33:39,393 | INFO     | sufficient remaining disk space (29390536704 B)
[2025-04-19 12:33:58] 2025-04-19 16:33:39,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 12:33:58] 2025-04-19 16:33:39,394 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 12:33:58] 2025-04-19 16:33:39,394 | INFO     | update_server=False
[2025-04-19 12:33:58] 2025-04-19 16:33:39,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 12:33:58] 2025-04-19 16:33:39,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 12:33:58] 2025-04-19 16:33:39,395 | INFO     | aborting loop
[2025-04-19 12:33:58] 2025-04-19 16:33:39,399 | INFO     | all payload control threads have been joined
[2025-04-19 12:33:58] 2025-04-19 16:33:39,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 12:33:58] 2025-04-19 16:33:40,223 | INFO     | all job control threads have been joined
[2025-04-19 12:33:58] 2025-04-19 16:33:40,243 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 12:33:58] 2025-04-19 16:33:40,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 12:33:58] 2025-04-19 16:33:40,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 12:33:58] 2025-04-19 16:33:40,399 | INFO     | [job] retrieve thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:40,400 | INFO     | [payload] control thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:40,400 | INFO     | [job] job monitor thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:40,440 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:40,449 | INFO     | all data control threads have been joined
[2025-04-19 12:33:58] 2025-04-19 16:33:40,511 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:40,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 12:33:58] 2025-04-19 16:33:40,917 | INFO     | [payload] failed_post thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,108 | INFO     | [data] copytool_in thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,108 | INFO     | [job] validate thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,228 | INFO     | [job] control thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,455 | INFO     | [data] control thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,521 | INFO     | [payload] validate_post thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,549 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:41,983 | INFO     | [data] copytool_out thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:42,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 12:33:58] 2025-04-19 16:33:43,341 | INFO     | [job] queue monitor thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:44,652 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:50,034 | INFO     | job.realtimelogging is not enabled
[2025-04-19 12:33:58] 2025-04-19 16:33:51,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 12:33:58] 2025-04-19 16:33:53,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976908838720)>', '<ExcThread(monitor, started 139976331224832)>']
[2025-04-19 12:33:58] 2025-04-19 16:33:53,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 12:33:58] 2025-04-19 16:33:53,310 | INFO     | [monitor] control thread has ended
[2025-04-19 12:33:58] 2025-04-19 16:33:58,138 | INFO     | all workflow threads have been joined
[2025-04-19 12:33:58] 2025-04-19 16:33:58,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 12:33:58] 2025-04-19 16:33:58,139 | INFO     | traces error code: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:58,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 12:33:58] 2025-04-19 16:33:58,232 [wrapper] ==== pilot stdout END ====
[2025-04-19 12:33:58] 2025-04-19 16:33:58,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 12:33:58] 2025-04-19 16:33:58,239 [wrapper] pilotpid: 9804
[2025-04-19 12:33:58] 2025-04-19 16:33:58,242 [wrapper] Pilot exit status: 0
[2025-04-19 12:33:58] 2025-04-19 16:33:58,256 [wrapper] pandaids: 6607788679
[2025-04-19 12:33:58] 2025-04-19 16:33:58,295 [wrapper] cleanup supervisor_pilot 25432 9805
[2025-04-19 12:33:58] 2025-04-19 16:33:58,298 [wrapper] Test setup, not cleaning
[2025-04-19 12:33:58] 2025-04-19 16:33:58,302 [wrapper] apfmon messages muted
[2025-04-19 12:33:58] 2025-04-19 16:33:58,306 [wrapper] ==== wrapper stdout END ====
[2025-04-19 12:33:58] 2025-04-19 16:33:58,309 [wrapper] ==== wrapper stderr END ====
[2025-04-19 12:33:58]  *** Error codes and diagnostics ***
[2025-04-19 12:33:58]     "exeErrorCode": 0,
[2025-04-19 12:33:58]     "exeErrorDiag": "",
[2025-04-19 12:33:58]     "pilotErrorCode": 0,
[2025-04-19 12:33:58]     "pilotErrorDiag": "",
[2025-04-19 12:33:58]  *** Listing of results directory ***
[2025-04-19 12:33:58] total 421196
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 08:15 pilot3.tar.gz
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 08:17 queuedata.json
[2025-04-19 12:33:58] -rwx------ 1 boincer umatlas     37140 Apr 19 08:17 runpilot2-wrapper.sh
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas       100 Apr 19 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 12:33:58] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 11:08 run_atlas
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas       105 Apr 19 11:08 job.xml
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas 224458682 Apr 19 11:08 EVNT.44075481._003203.pool.root.1
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 11:08 start_atlas.sh
[2025-04-19 12:33:58] drwxrwx--x 2 boincer umatlas      4096 Apr 19 11:08 shared
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas    508894 Apr 19 11:08 input.tar.gz
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas         0 Apr 19 11:08 boinc_lockfile
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas      2579 Apr 19 11:08 pandaJob.out
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas       424 Apr 19 11:08 setup.sh.local
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas    991300 Apr 19 11:08 agis_schedconf.cvmfs.json
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas   1618536 Apr 19 11:08 agis_ddmendpoints.agis.ALL.json
[2025-04-19 12:33:58] drwx------ 4 boincer umatlas      4096 Apr 19 11:08 pilot3
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas      5867 Apr 19 12:29 init_data.xml
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas 201275486 Apr 19 12:32 HITS.44075483._082628.pool.root.1
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas      1050 Apr 19 12:33 memory_monitor_summary.json
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas       529 Apr 19 12:33 boinc_task_state.xml
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas    369804 Apr 19 12:33 log.44075483._082628.job.log.tgz.1
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas      7753 Apr 19 12:33 heartbeat.json
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas        95 Apr 19 12:33 pilot_heartbeat.json
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 12:33 boinc_mmap_file
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas        27 Apr 19 12:33 wrapper_checkpoint.txt
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas      4425 Apr 19 12:33 pilotlog.txt
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas    482854 Apr 19 12:33 log.44075483._082628.job.log.1
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas       357 Apr 19 12:33 output.list
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas       620 Apr 19 12:33 runtime_log
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas    870400 Apr 19 12:33 result.tar.gz
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 12:33 runtime_log.err
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas       658 Apr 19 12:33 B2wLDmvJMQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmqW6KDm1ADann.diag
[2025-04-19 12:33:58] -rw-r--r-- 1 boincer umatlas     21703 Apr 19 12:33 stderr.txt
[2025-04-19 12:33:58] HITS file was successfully produced:
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas 201275486 Apr 19 12:32 shared/HITS.pool.root.1
[2025-04-19 12:33:58]  *** Contents of shared directory: ***
[2025-04-19 12:33:58] total 417136
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas 224458682 Apr 19 11:08 ATLAS.root_0
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 11:08 start_atlas.sh
[2025-04-19 12:33:58] -rw-r--r-- 2 boincer umatlas    508894 Apr 19 11:08 input.tar.gz
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas 201275486 Apr 19 12:32 HITS.pool.root.1
[2025-04-19 12:33:58] -rw------- 1 boincer umatlas    870400 Apr 19 12:33 result.tar.gz
12:33:59 (6200): run_atlas exited; CPU time 47331.289075
12:33:59 (6200): called boinc_finish(0)

</stderr_txt>
]]>

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