Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:35 (182234): wrapper (7.7.26015): starting
23:01:35 (182234): wrapper: running run_atlas (--nthreads 8)
[2025-04-19 23:01:35] Arguments: --nthreads 8
[2025-04-19 23:01:35] Threads: 8
[2025-04-19 23:01:35] Checking for CVMFS
[2025-04-19 23:01:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 23:01:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 23:01:35] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 23:01:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 23:01:35] 2.12.7.0 2390 480 65612 145061 3 56 3627014 4096000 0 130560 0 485174 99.993 152417 17152 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://10.0.0.2:3128 1
[2025-04-19 23:01:35] CVMFS is ok
[2025-04-19 23:01:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 23:01:35] Checking for apptainer binary...
[2025-04-19 23:01:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 23:01:35] Running /usr/bin/apptainer --version
[2025-04-19 23:01:35] apptainer version 1.4.0-1.el9
[2025-04-19 23:01:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 23:01:35] rcruncher-D
[2025-04-19 23:01:35] apptainer works
[2025-04-19 23:01:35] Set ATHENA_PROC_NUMBER=8
[2025-04-19 23:01:35] Set ATHENA_CORE_NUMBER=8
[2025-04-19 23:01:35] Starting ATLAS job with PandaID=6607510206
[2025-04-19 23:01:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-20 00:22:49]  *** The last 200 lines of the pilot log: ***
[2025-04-20 00:22:49]  filetype=log
[2025-04-20 00:22:49]  guid=8f49388c-0755-436f-baf4-281972914829
[2025-04-20 00:22:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-20 00:22:49]  is_altstaged=None
[2025-04-20 00:22:49]  is_tar=False
[2025-04-20 00:22:49]  lfn=log.44075483._079179.job.log.tgz.1
[2025-04-20 00:22:49]  mtime=0
[2025-04-20 00:22:49]  protocol_id=None
[2025-04-20 00:22:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-20 00:22:49]  replicas=None
[2025-04-20 00:22:49]  scope=mc23_13p6TeV
[2025-04-20 00:22:49]  status=None
[2025-04-20 00:22:49]  status_code=0
[2025-04-20 00:22:49]  storage_token=
[2025-04-20 00:22:49]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6607510206/log.44075483._079179.job.log.tgz.1
[2025-04-20 00:22:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/af/log.44075483._079179.job.log.tgz.1
[2025-04-20 00:22:49]  workdir=None
[2025-04-20 00:22:49] ]
[2025-04-20 00:22:49] 2025-04-20 05:22:28,303 | INFO     | transferring file log.44075483._079179.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6607510206/log.44075483._079179.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-04-20 00:22:49] 2025-04-20 05:22:28,303 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6607510206/log.44075483._079179.job.log.tgz.1 /var/lib/boinc/slots/0/log.44075483._079179.job
[2025-04-20 00:22:49] 2025-04-20 05:22:28,319 | INFO     | adding to output.list: log.44075483._079179.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/af/log.44075483._079179.job.log.tg
[2025-04-20 00:22:49] 2025-04-20 05:22:28,320 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-20 00:22:49] 2025-04-20 05:22:28,320 | INFO     | summary of transferred files:
[2025-04-20 00:22:49] 2025-04-20 05:22:28,320 | INFO     |  -- lfn=log.44075483._079179.job.log.tgz.1, status_code=0, status=transferred
[2025-04-20 00:22:49] 2025-04-20 05:22:28,320 | INFO     | stage-out finished correctly
[2025-04-20 00:22:49] 2025-04-20 05:22:28,387 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-20 00:22:49] 2025-04-20 05:22:29,850 | INFO     | job 6607510206 has state=finished
[2025-04-20 00:22:49] 2025-04-20 05:22:29,850 | INFO     | preparing for final server update for job 6607510206 in state='finished'
[2025-04-20 00:22:49] 2025-04-20 05:22:29,850 | INFO     | this job has now completed (state=finished)
[2025-04-20 00:22:49] 2025-04-20 05:22:29,850 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-20 00:22:49] 2025-04-20 05:22:29,851 | INFO     | log transfer has been attempted: DONE
[2025-04-20 00:22:49] 2025-04-20 05:22:29,851 | INFO     | job 6607510206 has finished - writing final server update
[2025-04-20 00:22:49] 2025-04-20 05:22:29,851 | INFO     | total number of processed events: 400 (read)
[2025-04-20 00:22:49] 2025-04-20 05:22:29,853 | INFO     | executing command: lscpu
[2025-04-20 00:22:49] 2025-04-20 05:22:29,875 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-20 00:22:49] 2025-04-20 05:22:30,148 | INFO     | PID=185890 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-20 00:22:49] 2025-04-20 05:22:30,549 | INFO     | monitor loop #369: job 0:6607510206 is in state 'finished'
[2025-04-20 00:22:49] 2025-04-20 05:22:30,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 00:22:49] 2025-04-20 05:22:33,051 | INFO     | monitor loop #370: job 0:6607510206 is in state 'finished'
[2025-04-20 00:22:49] 2025-04-20 05:22:33,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,220 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-20 00:22:49] 2025-04-20 05:22:35,220 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6607510206/memory_monitor_summary.json (trf name=prmon)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,220 | INFO     | extracted standard info from prmon json
[2025-04-20 00:22:49] 2025-04-20 05:22:35,221 | INFO     | extracted standard memory fields from prmon json
[2025-04-20 00:22:49] 2025-04-20 05:22:35,221 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-20 00:22:49] 2025-04-20 05:22:35,221 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-20 00:22:49] 2025-04-20 05:22:35,221 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | fitting pss+swap vs Time
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | sum of square deviations: 115715658.0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | sum of deviations: 20855047830.000004
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | mean x: 1745124197.5
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | mean y: 2578559.9444444445
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | -- intersect: -314515346128.80316
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | intersect: -314515346128.80316
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | chi2: 1.7854090471886075
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | -- intersect: -314515346128.80316
[2025-04-20 00:22:49] 2025-04-20 05:22:35,222 | INFO     | current memory leak: 180.23 B/s (using 72 data points, chi2=1.79)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | ..............................
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . Timing measurements:
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . get job = 0 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . initial setup = 3 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . payload setup = 4 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . stage-in = 0 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . payload execution = 4819 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . stage-out = 0 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | . log creation = 0 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,223 | INFO     | ..............................
[2025-04-20 00:22:49] 2025-04-20 05:22:35,698 | INFO     | 
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | job summary report
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | --------------------------------------------------
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | PanDA job id: 6607510206
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | task id: 44075483
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | errors: (none)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | pilot state: finished 
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | transexitcode: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | exeerrorcode: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | exeerrordiag: 
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | exitcode: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | exitmsg: OK
[2025-04-20 00:22:49] 2025-04-20 05:22:35,699 | INFO     | cpuconsumptiontime: 31678 s
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | nevents: 400
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | neventsw: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | pid: 192313
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | pgrp: 192313
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | corecount: 8
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | event service: False
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | sizes: {0: 2426602, 1: 2426801, 4: 2427007, 11: 2427035, 4828: 2453266, 4829: 2462391, 4836: 2462505}
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | --------------------------------------------------
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | 
[2025-04-20 00:22:49] 2025-04-20 05:22:35,700 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-04-20 00:22:49] 2025-04-20 05:22:35,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | job 6607510206 has completed (purged errors)
[2025-04-20 00:22:49] 2025-04-20 05:22:35,721 | INFO     | overall cleanup function is called
[2025-04-20 00:22:49] 2025-04-20 05:22:36,728 | INFO     | --- collectZombieJob: --- 10, [192313]
[2025-04-20 00:22:49] 2025-04-20 05:22:36,728 | INFO     | zombie collector waiting for pid 192313
[2025-04-20 00:22:49] 2025-04-20 05:22:36,729 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-20 00:22:49] 2025-04-20 05:22:36,729 | INFO     | collected zombie processes
[2025-04-20 00:22:49] 2025-04-20 05:22:36,729 | INFO     | will attempt to kill all subprocesses of pid=192313
[2025-04-20 00:22:49] 2025-04-20 05:22:36,778 | INFO     | process IDs to be killed: [192313] (in reverse order)
[2025-04-20 00:22:49] 2025-04-20 05:22:36,818 | WARNING  | found no corresponding commands to process id(s)
[2025-04-20 00:22:49] 2025-04-20 05:22:36,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-20 00:22:49] 2025-04-20 05:22:36,820 | INFO     | did not find any defunct processes belonging to 192313
[2025-04-20 00:22:49] 2025-04-20 05:22:36,821 | INFO     | did not find any defunct processes belonging to 192313
[2025-04-20 00:22:49] 2025-04-20 05:22:36,821 | INFO     | ready for new job
[2025-04-20 00:22:49] 2025-04-20 05:22:36,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | **************************************
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | **************************************
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | 
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | pilot is running in a VM
[2025-04-20 00:22:49] 2025-04-20 05:22:36,823 | INFO     | architecture information:
[2025-04-20 00:22:49] 2025-04-20 05:22:36,824 | INFO     | executing command: cat /etc/os-release
[2025-04-20 00:22:49] 2025-04-20 05:22:36,837 | INFO     | cat /etc/os-release:
[2025-04-20 00:22:49] NAME="CentOS Linux"
[2025-04-20 00:22:49] VERSION="7 (Core)"
[2025-04-20 00:22:49] ID="centos"
[2025-04-20 00:22:49] ID_LIKE="rhel fedora"
[2025-04-20 00:22:49] VERSION_ID="7"
[2025-04-20 00:22:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-20 00:22:49] ANSI_COLOR="0;31"
[2025-04-20 00:22:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-20 00:22:49] HOME_URL="https://www.centos.org/"
[2025-04-20 00:22:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-20 00:22:49] 
[2025-04-20 00:22:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-20 00:22:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-20 00:22:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-20 00:22:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-20 00:22:49] 
[2025-04-20 00:22:49] 2025-04-20 05:22:36,837 | INFO     | **************************************
[2025-04-20 00:22:49] 2025-04-20 05:22:37,340 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-04-20 00:22:49] 2025-04-20 05:22:37,355 | INFO     | sufficient remaining disk space (111670198272 B)
[2025-04-20 00:22:49] 2025-04-20 05:22:37,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-20 00:22:49] 2025-04-20 05:22:37,355 | INFO     | current server update state: UPDATING_FINAL
[2025-04-20 00:22:49] 2025-04-20 05:22:37,356 | INFO     | update_server=False
[2025-04-20 00:22:49] 2025-04-20 05:22:37,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-20 00:22:49] 2025-04-20 05:22:37,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-20 00:22:49] 2025-04-20 05:22:37,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-20 00:22:49] 2025-04-20 05:22:37,356 | INFO     | aborting loop
[2025-04-20 00:22:49] 2025-04-20 05:22:37,394 | INFO     | all data control threads have been joined
[2025-04-20 00:22:49] 2025-04-20 05:22:37,477 | INFO     | all job control threads have been joined
[2025-04-20 00:22:49] 2025-04-20 05:22:37,800 | INFO     | all payload control threads have been joined
[2025-04-20 00:22:49] 2025-04-20 05:22:38,169 | INFO     | found 0 job(s) in 20 queues
[2025-04-20 00:22:49] 2025-04-20 05:22:38,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-20 00:22:49] 2025-04-20 05:22:38,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-20 00:22:49] 2025-04-20 05:22:38,361 | INFO     | [job] retrieve thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,361 | INFO     | [job] job monitor thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,395 | INFO     | [data] control thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,482 | INFO     | [job] control thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,512 | INFO     | [job] create_data_payload thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,612 | INFO     | [payload] execute_payloads thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,625 | INFO     | [payload] validate_pre thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,805 | INFO     | [payload] control thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,943 | INFO     | [data] copytool_in thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:38,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-20 00:22:49] 2025-04-20 05:22:39,065 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:39,361 | INFO     | [data] copytool_out thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:39,392 | INFO     | [payload] validate_post thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:39,741 | INFO     | [payload] failed_post thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:39,753 | INFO     | [job] validate thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:40,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-20 00:22:49] 2025-04-20 05:22:41,287 | INFO     | [job] queue monitor thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:42,978 | INFO     | [data] queue_monitor thread has finished
[2025-04-20 00:22:49] 2025-04-20 05:22:44,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140141671032640)>', '<ExcThread(monitor, started 140140932482816)>']
[2025-04-20 00:22:49] 2025-04-20 05:22:44,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-20 00:22:49] 2025-04-20 05:22:44,200 | INFO     | [monitor] control thread has ended
[2025-04-20 00:22:49] 2025-04-20 05:22:49,133 | INFO     | all workflow threads have been joined
[2025-04-20 00:22:49] 2025-04-20 05:22:49,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-20 00:22:49] 2025-04-20 05:22:49,134 | INFO     | traces error code: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:49,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-20 00:22:49] 2025-04-20 05:22:49,209 [wrapper] ==== pilot stdout END ====
[2025-04-20 00:22:49] 2025-04-20 05:22:49,212 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-20 00:22:49] 2025-04-20 05:22:49,215 [wrapper] pilotpid: 185890
[2025-04-20 00:22:49] 2025-04-20 05:22:49,217 [wrapper] Pilot exit status: 0
[2025-04-20 00:22:49] 2025-04-20 05:22:49,228 [wrapper] pandaids: 6607510206
[2025-04-20 00:22:49] 2025-04-20 05:22:49,252 [wrapper] cleanup supervisor_pilot  203633 185891
[2025-04-20 00:22:49] 2025-04-20 05:22:49,254 [wrapper] Test setup, not cleaning
[2025-04-20 00:22:49] 2025-04-20 05:22:49,257 [wrapper] apfmon messages muted
[2025-04-20 00:22:49] 2025-04-20 05:22:49,260 [wrapper] ==== wrapper stdout END ====
[2025-04-20 00:22:49] 2025-04-20 05:22:49,262 [wrapper] ==== wrapper stderr END ====
[2025-04-20 00:22:49]  *** Error codes and diagnostics ***
[2025-04-20 00:22:49]     "exeErrorCode": 0,
[2025-04-20 00:22:49]     "exeErrorDiag": "",
[2025-04-20 00:22:49]     "pilotErrorCode": 0,
[2025-04-20 00:22:49]     "pilotErrorDiag": "",
[2025-04-20 00:22:49]  *** Listing of results directory ***
[2025-04-20 00:22:49] total 417264
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc    495897 Apr 19 01:42 pilot3.tar.gz
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc      5111 Apr 19 01:58 queuedata.json
[2025-04-20 00:22:49] -rwx------. 1 boinc boinc     37140 Apr 19 01:58 runpilot2-wrapper.sh
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc       100 Apr 19 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-20 00:22:49] -rwxr-xr-x. 1 boinc boinc      7986 Apr 19 23:01 run_atlas
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc       105 Apr 19 23:01 job.xml
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc 224791374 Apr 19 23:01 EVNT.44075481._003071.pool.root.1
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc     17569 Apr 19 23:01 start_atlas.sh
[2025-04-20 00:22:49] drwxrwx--x. 2 boinc boinc        68 Apr 19 23:01 shared
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc    508885 Apr 19 23:01 input.tar.gz
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc      6386 Apr 19 23:01 init_data.xml
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc         0 Apr 19 23:01 boinc_lockfile
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc      2578 Apr 19 23:01 pandaJob.out
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc       424 Apr 19 23:01 setup.sh.local
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc    991292 Apr 19 23:01 agis_schedconf.cvmfs.json
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc   1618536 Apr 19 23:01 agis_ddmendpoints.agis.ALL.json
[2025-04-20 00:22:49] drwx------. 4 boinc boinc      4096 Apr 19 23:01 pilot3
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc 197071381 Apr 20 00:22 HITS.44075483._079179.pool.root.1
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc        95 Apr 20 00:22 pilot_heartbeat.json
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc      8192 Apr 20 00:22 boinc_mmap_file
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc        27 Apr 20 00:22 wrapper_checkpoint.txt
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc       529 Apr 20 00:22 boinc_task_state.xml
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc      1025 Apr 20 00:22 memory_monitor_summary.json
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc    312245 Apr 20 00:22 log.44075483._079179.job.log.tgz.1
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc      7663 Apr 20 00:22 heartbeat.json
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc      4416 Apr 20 00:22 pilotlog.txt
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc    468420 Apr 20 00:22 log.44075483._079179.job.log.1
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc       357 Apr 20 00:22 output.list
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc       620 Apr 20 00:22 runtime_log
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc    798720 Apr 20 00:22 result.tar.gz
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc     10978 Apr 20 00:22 runtime_log.err
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc       643 Apr 20 00:22 AesMDmmKHQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmrFhLDmzW2DRo.diag
[2025-04-20 00:22:49] -rw-r--r--. 1 boinc boinc     20940 Apr 20 00:22 stderr.txt
[2025-04-20 00:22:49] HITS file was successfully produced:
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc 197071381 Apr 20 00:22 shared/HITS.pool.root.1
[2025-04-20 00:22:49]  *** Contents of shared directory: ***
[2025-04-20 00:22:49] total 413280
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc 224791374 Apr 19 23:01 ATLAS.root_0
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc     17569 Apr 19 23:01 start_atlas.sh
[2025-04-20 00:22:49] -rw-r--r--. 2 boinc boinc    508885 Apr 19 23:01 input.tar.gz
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc 197071381 Apr 20 00:22 HITS.pool.root.1
[2025-04-20 00:22:49] -rw-------. 1 boinc boinc    798720 Apr 20 00:22 result.tar.gz
00:22:50 (182234): run_atlas exited; CPU time 31693.518725
00:22:50 (182234): called boinc_finish(0)

</stderr_txt>
]]>

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