Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:22:37 (1239779): wrapper (7.7.26015): starting
11:22:37 (1239779): wrapper: running run_atlas (--nthreads 4)
[2025-04-21 11:22:37] Arguments: --nthreads 4
[2025-04-21 11:22:37] Threads: 4
[2025-04-21 11:22:37] Checking for CVMFS
[2025-04-21 11:22:37] No cvmfs_config command found, will try listing directly
[2025-04-21 11:22:37] CVMFS is ok
[2025-04-21 11:22:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-21 11:22:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-21 11:22:37] Further information can be found at the LHC@home message board.
[2025-04-21 11:22:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-21 11:22:37] Checking for apptainer binary...
[2025-04-21 11:22:37] which: no apptainer in ((null))
[2025-04-21 11:22:37] apptainer is not installed, using version from CVMFS
[2025-04-21 11:22:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-21 11:22:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-04-21 11:22:37] apptainer works
[2025-04-21 11:22:37] Set ATHENA_PROC_NUMBER=4
[2025-04-21 11:22:37] Set ATHENA_CORE_NUMBER=4
[2025-04-21 11:22:37] Starting ATLAS job with PandaID=6607788041
[2025-04-21 11:22:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-21 13:01:39]  *** The last 200 lines of the pilot log: ***
[2025-04-21 13:01:39]  lfn=log.44075483._082426.job.log.tgz.1
[2025-04-21 13:01:39]  mtime=0
[2025-04-21 13:01:39]  protocol_id=None
[2025-04-21 13:01:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-21 13:01:39]  replicas=None
[2025-04-21 13:01:39]  scope=mc23_13p6TeV
[2025-04-21 13:01:39]  status=None
[2025-04-21 13:01:39]  status_code=0
[2025-04-21 13:01:39]  storage_token=
[2025-04-21 13:01:39]  surl=/scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6607788041/log.44075483._082426.job.log.tgz.1
[2025-04-21 13:01:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/39/log.44075483._082426.job.log.tgz.1
[2025-04-21 13:01:39]  workdir=None
[2025-04-21 13:01:39] ]
[2025-04-21 13:01:39] 2025-04-21 11:01:12,681 | INFO     | transferring file log.44075483._082426.job.log.tgz.1 from /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6607788041/log.44075483._082426.job.log.tgz.1 to /scratch/
[2025-04-21 13:01:39] 2025-04-21 11:01:12,681 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6607788041/log.44075483._082426.job.log.tgz.1 /scratch/boinc/var/slot112/slots/0/
[2025-04-21 13:01:39] 2025-04-21 11:01:12,699 | INFO     | adding to output.list: log.44075483._082426.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/39/log.44075483._082426.job.log.tg
[2025-04-21 13:01:39] 2025-04-21 11:01:12,699 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-21 13:01:39] 2025-04-21 11:01:12,699 | INFO     | summary of transferred files:
[2025-04-21 13:01:39] 2025-04-21 11:01:12,700 | INFO     |  -- lfn=log.44075483._082426.job.log.tgz.1, status_code=0, status=transferred
[2025-04-21 13:01:39] 2025-04-21 11:01:12,700 | INFO     | stage-out finished correctly
[2025-04-21 13:01:39] 2025-04-21 11:01:14,055 | INFO     | PID=1247907 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-21 13:01:39] 2025-04-21 11:01:14,057 | INFO     | .. there are 12 such processes running
[2025-04-21 13:01:39] 2025-04-21 11:01:16,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-21 13:01:39] 2025-04-21 11:01:16,514 | INFO     | job 6607788041 has state=finished
[2025-04-21 13:01:39] 2025-04-21 11:01:16,515 | INFO     | preparing for final server update for job 6607788041 in state='finished'
[2025-04-21 13:01:39] 2025-04-21 11:01:16,515 | INFO     | this job has now completed (state=finished)
[2025-04-21 13:01:39] 2025-04-21 11:01:16,515 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-21 13:01:39] 2025-04-21 11:01:16,515 | INFO     | log transfer has been attempted: DONE
[2025-04-21 13:01:39] 2025-04-21 11:01:16,515 | INFO     | job 6607788041 has finished - writing final server update
[2025-04-21 13:01:39] 2025-04-21 11:01:16,516 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_274627/.job.ad'
[2025-04-21 13:01:39] 2025-04-21 11:01:16,516 | INFO     | total number of processed events: 400 (read)
[2025-04-21 13:01:39] 2025-04-21 11:01:16,522 | INFO     | executing command: lscpu
[2025-04-21 13:01:39] 2025-04-21 11:01:16,595 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-21 13:01:39] 2025-04-21 11:01:17,383 | WARNING  | process 1269933 can no longer be monitored (due to stat problems) - aborting
[2025-04-21 13:01:39] 2025-04-21 11:01:17,384 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6607788041/memory_monitor_summary.json (trf name=prmon)
[2025-04-21 13:01:39] 2025-04-21 11:01:17,688 | INFO     | number of running child processes to parent process 1269933: 1
[2025-04-21 13:01:39] 2025-04-21 11:01:17,689 | INFO     | maximum number of monitored processes: 6
[2025-04-21 13:01:39] 2025-04-21 11:01:20,192 | INFO     | monitor loop #436: job 0:6607788041 is in state 'finished'
[2025-04-21 13:01:39] 2025-04-21 11:01:20,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,620 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-21 13:01:39] 2025-04-21 11:01:20,620 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6607788041/memory_monitor_summary.json (trf name=prmon)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,621 | INFO     | extracted standard info from prmon json
[2025-04-21 13:01:39] 2025-04-21 11:01:20,621 | INFO     | extracted standard memory fields from prmon json
[2025-04-21 13:01:39] 2025-04-21 11:01:20,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-21 13:01:39] 2025-04-21 11:01:20,621 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-21 13:01:39] 2025-04-21 11:01:20,621 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-21 13:01:39] 2025-04-21 11:01:20,622 | INFO     | fitting pss+swap vs Time
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | sum of square deviations: 226022842.5
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | sum of deviations: 7128012595.499998
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | mean x: 1745230409.5
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | mean y: 2353150.7
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | -- intersect: -55036439403.93138
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | intersect: -55036439403.93138
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | chi2: 1.4616256326799475
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | -- intersect: -55036439403.93138
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | current memory leak: 31.54 B/s (using 90 data points, chi2=1.46)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,623 | INFO     | ..............................
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . Timing measurements:
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . get job = 0 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . initial setup = 1 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . payload setup = 5 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . stage-in = 0 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . payload execution = 5882 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . stage-out = 0 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | . log creation = 0 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,624 | INFO     | ..............................
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | 
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | job summary report
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | --------------------------------------------------
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | PanDA job id: 6607788041
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | task id: 44075483
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | errors: (none)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | pilot state: finished 
[2025-04-21 13:01:39] 2025-04-21 11:01:20,733 | INFO     | transexitcode: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | exeerrorcode: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | exeerrordiag: 
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | exitcode: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | exitmsg: OK
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | cpuconsumptiontime: 20699 s
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | nevents: 400
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | neventsw: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | pid: 1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | pgrp: 1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | corecount: 4
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | event service: False
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | sizes: {0: 2426836, 4: 2427042, 11: 2427070, 5890: 2453760, 5891: 2462780, 5895: 2462780, 5899: 2463078}
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | --------------------------------------------------
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | 
[2025-04-21 13:01:39] 2025-04-21 11:01:20,734 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,755 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-21 13:01:39] 2025-04-21 11:01:20,757 | INFO     | job 6607788041 has completed (purged errors)
[2025-04-21 13:01:39] 2025-04-21 11:01:20,757 | INFO     | overall cleanup function is called
[2025-04-21 13:01:39] 2025-04-21 11:01:21,764 | INFO     | --- collectZombieJob: --- 10, [1269933]
[2025-04-21 13:01:39] 2025-04-21 11:01:21,765 | INFO     | zombie collector waiting for pid 1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:21,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-21 13:01:39] 2025-04-21 11:01:21,765 | INFO     | collected zombie processes
[2025-04-21 13:01:39] 2025-04-21 11:01:21,765 | INFO     | will attempt to kill all subprocesses of pid=1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:22,070 | INFO     | process IDs to be killed: [1269933] (in reverse order)
[2025-04-21 13:01:39] 2025-04-21 11:01:22,195 | WARNING  | found no corresponding commands to process id(s)
[2025-04-21 13:01:39] 2025-04-21 11:01:22,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-21 13:01:39] 2025-04-21 11:01:22,208 | INFO     | did not find any defunct processes belonging to 1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:22,218 | INFO     | did not find any defunct processes belonging to 1269933
[2025-04-21 13:01:39] 2025-04-21 11:01:22,218 | INFO     | ready for new job
[2025-04-21 13:01:39] 2025-04-21 11:01:22,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-21 13:01:39] 2025-04-21 11:01:22,219 | INFO     | **************************************
[2025-04-21 13:01:39] 2025-04-21 11:01:22,219 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-21 13:01:39] 2025-04-21 11:01:22,219 | INFO     | **************************************
[2025-04-21 13:01:39] 2025-04-21 11:01:22,219 | INFO     | 
[2025-04-21 13:01:39] 2025-04-21 11:01:22,225 | INFO     | architecture information:
[2025-04-21 13:01:39] 2025-04-21 11:01:22,225 | INFO     | executing command: cat /etc/os-release
[2025-04-21 13:01:39] 2025-04-21 11:01:22,240 | INFO     | cat /etc/os-release:
[2025-04-21 13:01:39] NAME="CentOS Linux"
[2025-04-21 13:01:39] VERSION="7 (Core)"
[2025-04-21 13:01:39] ID="centos"
[2025-04-21 13:01:39] ID_LIKE="rhel fedora"
[2025-04-21 13:01:39] VERSION_ID="7"
[2025-04-21 13:01:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-21 13:01:39] ANSI_COLOR="0;31"
[2025-04-21 13:01:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-21 13:01:39] HOME_URL="https://www.centos.org/"
[2025-04-21 13:01:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-21 13:01:39] 
[2025-04-21 13:01:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-21 13:01:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-21 13:01:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-21 13:01:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-21 13:01:39] 
[2025-04-21 13:01:39] 2025-04-21 11:01:22,241 | INFO     | **************************************
[2025-04-21 13:01:39] 2025-04-21 11:01:22,744 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-04-21 13:01:39] 2025-04-21 11:01:22,762 | INFO     | sufficient remaining disk space (3365448712192 B)
[2025-04-21 13:01:39] 2025-04-21 11:01:22,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-21 13:01:39] 2025-04-21 11:01:22,763 | INFO     | current server update state: UPDATING_FINAL
[2025-04-21 13:01:39] 2025-04-21 11:01:22,763 | INFO     | update_server=False
[2025-04-21 13:01:39] 2025-04-21 11:01:22,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-21 13:01:39] 2025-04-21 11:01:22,763 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-21 13:01:39] 2025-04-21 11:01:22,764 | INFO     | found 0 job(s) in 20 queues
[2025-04-21 13:01:39] 2025-04-21 11:01:22,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-21 13:01:39] 2025-04-21 11:01:22,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-21 13:01:39] 2025-04-21 11:01:22,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-21 13:01:39] 2025-04-21 11:01:23,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-21 13:01:39] 2025-04-21 11:01:23,509 | INFO     | all data control threads have been joined
[2025-04-21 13:01:39] 2025-04-21 11:01:23,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-21 13:01:39] 2025-04-21 11:01:23,701 | INFO     | aborting loop
[2025-04-21 13:01:39] 2025-04-21 11:01:23,769 | INFO     | [job] retrieve thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:23,806 | INFO     | [payload] failed_post thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:23,810 | INFO     | all payload control threads have been joined
[2025-04-21 13:01:39] 2025-04-21 11:01:24,012 | INFO     | all job control threads have been joined
[2025-04-21 13:01:39] 2025-04-21 11:01:24,395 | INFO     | [payload] validate_post thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,515 | INFO     | [data] control thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,537 | INFO     | [data] copytool_in thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,560 | INFO     | [job] validate thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,706 | INFO     | [job] job monitor thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,792 | INFO     | [payload] execute_payloads thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,817 | INFO     | [payload] control thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,850 | INFO     | [job] create_data_payload thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:24,859 | INFO     | [payload] validate_pre thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:25,017 | INFO     | [job] control thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:25,280 | INFO     | [data] copytool_out thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:25,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-21 13:01:39] 2025-04-21 11:01:26,701 | INFO     | [job] queue monitor thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:26,770 | INFO     | [data] queue_monitor thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:33,025 | INFO     | job.realtimelogging is not enabled
[2025-04-21 13:01:39] 2025-04-21 11:01:34,030 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-21 13:01:39] 2025-04-21 11:01:34,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23180535547712)>', '<ExcThread(monitor, started 23180292871936)>']
[2025-04-21 13:01:39] 2025-04-21 11:01:34,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-21 13:01:39] 2025-04-21 11:01:34,810 | INFO     | [monitor] control thread has ended
[2025-04-21 13:01:39] 2025-04-21 11:01:39,646 | INFO     | all workflow threads have been joined
[2025-04-21 13:01:39] 2025-04-21 11:01:39,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-21 13:01:39] 2025-04-21 11:01:39,647 | INFO     | traces error code: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:39,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-21 13:01:39] 2025-04-21 11:01:39,733 [wrapper] ==== pilot stdout END ====
[2025-04-21 13:01:39] 2025-04-21 11:01:39,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-21 13:01:39] 2025-04-21 11:01:39,739 [wrapper] pilotpid: 1247907
[2025-04-21 13:01:39] 2025-04-21 11:01:39,743 [wrapper] Pilot exit status: 0
[2025-04-21 13:01:39] 2025-04-21 11:01:39,753 [wrapper] pandaids: 6607788041
[2025-04-21 13:01:39] 2025-04-21 11:01:39,830 [wrapper] cleanup supervisor_pilot 1873985 1247908
[2025-04-21 13:01:39] 2025-04-21 11:01:39,833 [wrapper] Test setup, not cleaning
[2025-04-21 13:01:39] 2025-04-21 11:01:39,835 [wrapper] apfmon messages muted
[2025-04-21 13:01:39] 2025-04-21 11:01:39,839 [wrapper] ==== wrapper stdout END ====
[2025-04-21 13:01:39] 2025-04-21 11:01:39,841 [wrapper] ==== wrapper stderr END ====
[2025-04-21 13:01:39]  *** Error codes and diagnostics ***
[2025-04-21 13:01:39]     "exeErrorCode": 0,
[2025-04-21 13:01:39]     "exeErrorDiag": "",
[2025-04-21 13:01:39]     "pilotErrorCode": 0,
[2025-04-21 13:01:39]     "pilotErrorDiag": "",
[2025-04-21 13:01:39]  *** Listing of results directory ***
[2025-04-21 13:01:39] total 413180
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc    495897 Apr 19 13:58 pilot3.tar.gz
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc      5111 Apr 19 13:59 queuedata.json
[2025-04-21 13:01:39] -rwx------ 1 boinc boinc     37140 Apr 19 14:00 runpilot2-wrapper.sh
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc       100 Apr 21 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-21 13:01:39] -rwxr-xr-x 1 boinc boinc      7986 Apr 21 11:22 run_atlas
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc       105 Apr 21 11:22 job.xml
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc      6678 Apr 21 11:22 init_data.xml
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc 222944999 Apr 21 11:22 EVNT.44075481._003195.pool.root.1
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc     17569 Apr 21 11:22 start_atlas.sh
[2025-04-21 13:01:39] drwxrwx--x 2 boinc boinc      4096 Apr 21 11:22 shared
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc    508894 Apr 21 11:22 input.tar.gz
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc         0 Apr 21 11:22 boinc_lockfile
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc      2579 Apr 21 11:22 pandaJob.out
[2025-04-21 13:01:39] -rw------- 1 boinc boinc       424 Apr 21 11:22 setup.sh.local
[2025-04-21 13:01:39] -rw------- 1 boinc boinc    991300 Apr 21 11:22 agis_schedconf.cvmfs.json
[2025-04-21 13:01:39] -rw------- 1 boinc boinc   1618536 Apr 21 11:22 agis_ddmendpoints.agis.ALL.json
[2025-04-21 13:01:39] drwx------ 4 boinc boinc      4096 Apr 21 11:22 pilot3
[2025-04-21 13:01:39] -rw------- 1 boinc boinc        95 Apr 21 13:00 pilot_heartbeat.json
[2025-04-21 13:01:39] -rw------- 1 boinc boinc 194616770 Apr 21 13:00 HITS.44075483._082426.pool.root.1
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc       529 Apr 21 13:00 boinc_task_state.xml
[2025-04-21 13:01:39] -rw------- 1 boinc boinc      1023 Apr 21 13:01 memory_monitor_summary.json
[2025-04-21 13:01:39] -rw------- 1 boinc boinc    254489 Apr 21 13:01 log.44075483._082426.job.log.tgz.1
[2025-04-21 13:01:39] -rw------- 1 boinc boinc      7697 Apr 21 13:01 heartbeat.json
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc      8192 Apr 21 13:01 boinc_mmap_file
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc        27 Apr 21 13:01 wrapper_checkpoint.txt
[2025-04-21 13:01:39] -rw------- 1 boinc boinc      4560 Apr 21 13:01 pilotlog.txt
[2025-04-21 13:01:39] -rw------- 1 boinc boinc    578142 Apr 21 13:01 log.44075483._082426.job.log.1
[2025-04-21 13:01:39] -rw------- 1 boinc boinc       357 Apr 21 13:01 output.list
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc       620 Apr 21 13:01 runtime_log
[2025-04-21 13:01:39] -rw------- 1 boinc boinc    849920 Apr 21 13:01 result.tar.gz
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc     11442 Apr 21 13:01 runtime_log.err
[2025-04-21 13:01:39] -rw------- 1 boinc boinc       661 Apr 21 13:01 3QFODmM3LQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmVqhLDmMWFjim.diag
[2025-04-21 13:01:39] -rw-r--r-- 1 boinc boinc     21520 Apr 21 13:01 stderr.txt
[2025-04-21 13:01:39] HITS file was successfully produced:
[2025-04-21 13:01:39] -rw------- 1 boinc boinc 194616770 Apr 21 13:00 shared/HITS.pool.root.1
[2025-04-21 13:01:39]  *** Contents of shared directory: ***
[2025-04-21 13:01:39] total 409136
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc 222944999 Apr 21 11:22 ATLAS.root_0
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc     17569 Apr 21 11:22 start_atlas.sh
[2025-04-21 13:01:39] -rw-r--r-- 2 boinc boinc    508894 Apr 21 11:22 input.tar.gz
[2025-04-21 13:01:39] -rw------- 1 boinc boinc 194616770 Apr 21 13:00 HITS.pool.root.1
[2025-04-21 13:01:39] -rw------- 1 boinc boinc    849920 Apr 21 13:01 result.tar.gz
13:01:41 (1239779): run_atlas exited; CPU time 20837.655364
13:01:41 (1239779): called boinc_finish(0)

</stderr_txt>
]]>

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