Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 12:55:34 (4940): Detected: vboxwrapper 26206
2025-04-19 12:55:34 (4940): Detected: BOINC client v7.22.2
2025-04-19 12:55:35 (4940): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-19 12:55:36 (4940): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 12:55:36 (4940): Create VM. (boinc_14df7d9b93b5dc3a, slot#1)
2025-04-19 12:55:37 (4940): Setting Memory Size for VM. (4700MB)
2025-04-19 12:55:37 (4940): Setting CPU Count for VM. (7)
2025-04-19 12:55:38 (4940): Setting Chipset Options for VM.
2025-04-19 12:55:38 (4940): Setting Graphics Controller Options for VM.
2025-04-19 12:55:38 (4940): Setting Boot Options for VM.
2025-04-19 12:55:39 (4940): Setting Network Configuration for NAT.
2025-04-19 12:55:39 (4940): Enabling VM Network Access.
2025-04-19 12:55:39 (4940): Disabling USB Support for VM.
2025-04-19 12:55:40 (4940): Disabling COM Port Support for VM.
2025-04-19 12:55:40 (4940): Disabling LPT Port Support for VM.
2025-04-19 12:55:40 (4940): Disabling Audio Support for VM.
2025-04-19 12:55:41 (4940): Disabling Clipboard Support for VM.
2025-04-19 12:55:41 (4940): Disabling Drag and Drop Support for VM.
2025-04-19 12:55:41 (4940): Adding storage controller(s) to VM.
2025-04-19 12:55:42 (4940): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 12:55:45 (4940): Adding VirtualBox Guest Additions to VM.
2025-04-19 12:55:45 (4940): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 12:55:45 (4940): forwarding host port 63515 to guest port 80
2025-04-19 12:55:46 (4940): Enabling remote desktop for VM.
2025-04-19 12:55:46 (4940): Required extension pack not installed, remote desktop not enabled.
2025-04-19 12:55:46 (4940): Enabling shared directory for VM.
2025-04-19 12:55:47 (4940): Starting VM using VBoxManage interface. (boinc_14df7d9b93b5dc3a, slot#1)
2025-04-19 12:55:57 (4940): Successfully started VM. (PID = '7288')
2025-04-19 12:55:57 (4940): Reporting VM Process ID to BOINC.
2025-04-19 12:55:57 (4940): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-19 12:55:57 (4940): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 12:55:57 (4940): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 12:55:57 (4940): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 12:55:57 (4940): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 12:55:57 (4940): Detected: Web Application Enabled (http://localhost:63515)
2025-04-19 12:55:57 (4940): Preference change detected
2025-04-19 12:55:57 (4940): Setting CPU throttle for VM. (75%)
2025-04-19 12:55:57 (4940): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 12:55:59 (4940): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 12:55:59 (4940): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 12:56:03 (4940): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 12:56:03 (4940): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 12:56:03 (4940): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 12:56:19 (4940): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 12:56:19 (4940): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 12:56:52 (4940): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000293 main     Log opened 2025-04-19T12:56:50.492304000Z
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000525 main     OS Product: Linux
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000598 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000676 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000776 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000778 main     Process ID: 1316
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.000779 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 12:56:52 (4940): Guest Log: 00:00:00.002369 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 12:56:52 (4940): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 12:56:52 (4940): Guest Log: [INFO] Mounting shared directory
2025-04-19 12:56:53 (4940): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 12:57:02 (4940): Guest Log: 00:00:10.028404 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 594 201 000ns (GuestNow=1 745 081 822 097 262 000 ns GuestLast=1 745 067 410 503 061 000 ns fSetTimeLastLoop=true )
2025-04-19 12:58:36 (4940): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 12:58:36 (4940): Guest Log: [INFO] Detected branch: prod
2025-04-19 12:58:36 (4940): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 12:58:36 (4940): Guest Log: Copying input files
2025-04-19 12:58:41 (4940): Guest Log: Copied input files into RunAtlas.
2025-04-19 12:58:41 (4940): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 12:58:41 (4940): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 12:58:41 (4940): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 12:58:41 (4940): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 12:58:52 (4940): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 12:58:52 (4940): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 12:58:52 (4940): Guest Log: 2.6.3.0 1636 1 29916 145045 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 12:58:56 (4940): Guest Log: copied the webapp to /var/www
2025-04-19 12:58:56 (4940): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-19 12:58:56 (4940): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-19 12:58:56 (4940): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 12:58:56 (4940): Guest Log:  *** Starting ATLAS job. (PandaID=6600414531 taskID=44075164) ***
2025-04-19 13:12:43 (4940): Guest Log:  *** Job finished ***
2025-04-19 13:12:43 (4940): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:32,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:33,336 | INFO     | [job] queue monitor thread has finished
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:34,990 | INFO     | [data] queue_monitor thread has finished
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:36,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999577335616)>', '<ExcThread(monitor, started 139999106275072)>']
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:37,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:37,725 | INFO     | [monitor] control thread has ended
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:41,932 | INFO     | all workflow threads have been joined
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:41,933 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:41,934 | INFO     | traces error code: 0
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:41,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,315 [wrapper] ==== pilot stdout END ====
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,331 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,345 [wrapper] pilotpid: 6041
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,359 [wrapper] Pilot exit status: 0
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,490 [wrapper] pandaids: 6600414531
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,566 [wrapper] cleanup supervisor_pilot  6047 6042
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,582 [wrapper] Test setup, not cleaning
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,596 [wrapper] apfmon messages muted
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,609 [wrapper] ==== wrapper stdout END ====
2025-04-19 13:12:43 (4940): Guest Log: 2025-04-19 17:12:42,622 [wrapper] ==== wrapper stderr END ====
2025-04-19 13:12:43 (4940): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 13:12:43 (4940): Guest Log:     "exeErrorCode": 65,
2025-04-19 13:12:43 (4940): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6438.7 KB/s",
2025-04-19 13:12:43 (4940): Guest Log:     "pilotErrorCode": 1305,
2025-04-19 13:12:43 (4940): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6438.7 KB/s",
2025-04-19 13:12:43 (4940): Guest Log:  *** Listing of results directory ***
2025-04-19 13:12:43 (4940): Guest Log: total 4172
2025-04-19 13:12:43 (4940): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 12 07:58 pilot3.tar.gz
2025-04-19 13:12:43 (4940): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 12 08:07 runpilot2-wrapper.sh
2025-04-19 13:12:43 (4940): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 12 08:07 queuedata.json
2025-04-19 13:12:43 (4940): Guest Log: -rwxr-xr-x. 1 atlas atlas    6103 Apr 19 16:58 init_data.xml
2025-04-19 13:12:43 (4940): Guest Log: -rwxr-xr-x. 1 atlas atlas  508879 Apr 19 16:58 input.tar.gz
2025-04-19 13:12:43 (4940): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 19 16:58 start_atlas.sh
2025-04-19 13:12:43 (4940): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 19 16:58 EVNT.44075162._001617.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 13:12:43 (4940): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Apr 19 16:58 pandaJob.out
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas     424 Apr 19 16:59 setup.sh.local
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas  991268 Apr 19 17:02 agis_schedconf.cvmfs.json
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 19 17:02 agis_ddmendpoints.agis.ALL.json
2025-04-19 13:12:43 (4940): Guest Log: drwx------. 4 atlas atlas    4096 Apr 19 17:02 pilot3
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas   50952 Apr 19 17:10 log.44075164._041732.job.log.tgz.1
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas      95 Apr 19 17:11 pilot_heartbeat.json
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas    8268 Apr 19 17:12 heartbeat.json
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 19 17:12 pilotlog.txt
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas  188695 Apr 19 17:12 log.44075164._041732.job.log.1
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas     188 Apr 19 17:12 output.list
2025-04-19 13:12:43 (4940): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 19 17:12 runtime_log
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas  256000 Apr 19 17:12 result.tar.gz
2025-04-19 13:12:43 (4940): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Apr 19 17:12 runtime_log.err
2025-04-19 13:12:43 (4940): Guest Log: -rw-------. 1 atlas atlas     647 Apr 19 17:12 2F3NDmr4kN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmW1QLDmzUaNfm.diag
2025-04-19 13:12:43 (4940): Guest Log: Looking for outputfile HITS.44075164._041732.pool.root.1
2025-04-19 13:12:43 (4940): Guest Log: No HITS file was produced
2025-04-19 13:12:43 (4940): Guest Log: Successfully finished the ATLAS job!
2025-04-19 13:12:44 (4940): Guest Log: Copying the results back to the shared directory!
2025-04-19 13:12:44 (4940): Guest Log:  *** Contents of shared directory: ***
2025-04-19 13:12:44 (4940): Guest Log: total 216732
2025-04-19 13:12:44 (4940): Guest Log: -rwxrwxrwx. 1 root root 221130999 Apr 19 16:55 ATLAS.root_0
2025-04-19 13:12:44 (4940): Guest Log: -rwxrwxrwx. 1 root root      6103 Apr 19 16:55 init_data.xml
2025-04-19 13:12:44 (4940): Guest Log: -rwxrwxrwx. 1 root root    508879 Apr 19 14:24 input.tar.gz
2025-04-19 13:12:44 (4940): Guest Log: -rwxrwxrwx. 1 root root    256000 Apr 19 17:12 result.tar.gz
2025-04-19 13:12:44 (4940): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 14:24 start_atlas.sh
2025-04-19 13:12:44 (4940): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 13:12:44 (4940): VM Completion File Detected.
2025-04-19 13:12:44 (4940): Powering off VM.
2025-04-19 13:12:45 (4940): Successfully stopped VM.
2025-04-19 13:12:45 (4940): Deregistering VM. (boinc_14df7d9b93b5dc3a, slot#1)
2025-04-19 13:12:45 (4940): Removing network bandwidth throttle group from VM.
2025-04-19 13:12:46 (4940): Removing VM from VirtualBox.
13:12:51 (4940): called boinc_finish(0)

</stderr_txt>
]]>

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