Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:07:40 (20663): wrapper (7.7.26015): starting
10:07:40 (20663): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 10:07:40] Arguments: --nthreads 12
[2025-04-19 10:07:40] Threads: 12
[2025-04-19 10:07:40] Checking for CVMFS
[2025-04-19 10:07:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 10:07:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 10:07:40] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 10:07:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 10:07:40] 2.11.2.0 22679 371279 172532 145040 0 55 11110080 20275201 1 130560 0 24695232 99.969 7816296 54248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 10:07:40] CVMFS is ok
[2025-04-19 10:07:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 10:07:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 10:07:40] Further information can be found at the LHC@home message board.
[2025-04-19 10:07:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 10:07:40] Checking for apptainer binary...
[2025-04-19 10:07:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 10:07:40] Running /usr/bin/apptainer --version
[2025-04-19 10:07:40] apptainer version 1.3.2-1.el7
[2025-04-19 10:07:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 10:07:42] c-205-11.aglt2.org
[2025-04-19 10:07:42] apptainer works
[2025-04-19 10:07:42] Set ATHENA_PROC_NUMBER=12
[2025-04-19 10:07:42] Set ATHENA_CORE_NUMBER=12
[2025-04-19 10:07:42] Starting ATLAS job with PandaID=6607297515
[2025-04-19 10:07:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 11:32:54]  *** The last 200 lines of the pilot log: ***
[2025-04-19 11:32:54]  filetype=log
[2025-04-19 11:32:54]  guid=fe74f87a-0fc0-4fd2-83da-ee80ac15e096
[2025-04-19 11:32:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 11:32:54]  is_altstaged=None
[2025-04-19 11:32:54]  is_tar=False
[2025-04-19 11:32:54]  lfn=log.44075483._077149.job.log.tgz.1
[2025-04-19 11:32:54]  mtime=0
[2025-04-19 11:32:54]  protocol_id=None
[2025-04-19 11:32:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 11:32:54]  replicas=None
[2025-04-19 11:32:54]  scope=mc23_13p6TeV
[2025-04-19 11:32:54]  status=None
[2025-04-19 11:32:54]  status_code=0
[2025-04-19 11:32:54]  storage_token=
[2025-04-19 11:32:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607297515/log.44075483._077149.job.log.tgz.1
[2025-04-19 11:32:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/b0/log.44075483._077149.job.log.tgz.1
[2025-04-19 11:32:54]  workdir=None
[2025-04-19 11:32:54] ]
[2025-04-19 11:32:54] 2025-04-19 15:32:29,867 | INFO     | transferring file log.44075483._077149.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607297515/log.44075483._077149.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 11:32:54] 2025-04-19 15:32:29,867 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607297515/log.44075483._077149.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._077149.job
[2025-04-19 11:32:54] 2025-04-19 15:32:29,889 | INFO     | adding to output.list: log.44075483._077149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/b0/log.44075483._077149.job.log.tg
[2025-04-19 11:32:54] 2025-04-19 15:32:29,890 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 11:32:54] 2025-04-19 15:32:29,890 | INFO     | summary of transferred files:
[2025-04-19 11:32:54] 2025-04-19 15:32:29,890 | INFO     |  -- lfn=log.44075483._077149.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 11:32:54] 2025-04-19 15:32:29,891 | INFO     | stage-out finished correctly
[2025-04-19 11:32:54] 2025-04-19 15:32:30,404 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 11:32:54] 2025-04-19 15:32:30,669 | INFO     | job 6607297515 has state=finished
[2025-04-19 11:32:54] 2025-04-19 15:32:30,669 | INFO     | preparing for final server update for job 6607297515 in state='finished'
[2025-04-19 11:32:54] 2025-04-19 15:32:30,670 | INFO     | this job has now completed (state=finished)
[2025-04-19 11:32:54] 2025-04-19 15:32:30,670 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 11:32:54] 2025-04-19 15:32:30,670 | INFO     | log transfer has been attempted: DONE
[2025-04-19 11:32:54] 2025-04-19 15:32:30,670 | INFO     | job 6607297515 has finished - writing final server update
[2025-04-19 11:32:54] 2025-04-19 15:32:30,671 | INFO     | total number of processed events: 400 (read)
[2025-04-19 11:32:54] 2025-04-19 15:32:30,672 | INFO     | executing command: lscpu
[2025-04-19 11:32:54] 2025-04-19 15:32:30,701 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 11:32:54] 2025-04-19 15:32:31,856 | INFO     | monitor loop #381: job 0:6607297515 is in state 'finished'
[2025-04-19 11:32:54] 2025-04-19 15:32:31,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 11:32:54] 2025-04-19 15:32:34,338 | INFO     | PID=24262 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-19 11:32:54] 2025-04-19 15:32:34,359 | INFO     | monitor loop #382: job 0:6607297515 is in state 'finished'
[2025-04-19 11:32:54] 2025-04-19 15:32:34,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,560 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 11:32:54] 2025-04-19 15:32:35,560 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607297515/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,561 | INFO     | extracted standard info from prmon json
[2025-04-19 11:32:54] 2025-04-19 15:32:35,561 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 11:32:54] 2025-04-19 15:32:35,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 11:32:54] 2025-04-19 15:32:35,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 11:32:54] 2025-04-19 15:32:35,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 11:32:54] 2025-04-19 15:32:35,564 | INFO     | fitting pss+swap vs Time
[2025-04-19 11:32:54] 2025-04-19 15:32:35,565 | INFO     | sum of square deviations: 136095575.0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,565 | INFO     | sum of deviations: 27894631867.0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,566 | INFO     | mean x: 1745074297.5
[2025-04-19 11:32:54] 2025-04-19 15:32:35,566 | INFO     | mean y: 2565476.5
[2025-04-19 11:32:54] 2025-04-19 15:32:35,566 | INFO     | -- intersect: -357674053394.6583
[2025-04-19 11:32:54] 2025-04-19 15:32:35,566 | INFO     | intersect: -357674053394.6583
[2025-04-19 11:32:54] 2025-04-19 15:32:35,566 | INFO     | chi2: 2.288586938376234
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | -- intersect: -357674053394.6583
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | current memory leak: 204.96 B/s (using 76 data points, chi2=2.29)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | ..............................
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | . Timing measurements:
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | . get job = 0 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,567 | INFO     | . initial setup = 2 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | . payload setup = 7 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | . stage-in = 0 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | . payload execution = 5046 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | . stage-out = 0 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | . log creation = 0 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,568 | INFO     | ..............................
[2025-04-19 11:32:54] 2025-04-19 15:32:35,652 | INFO     | 
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | job summary report
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | --------------------------------------------------
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | PanDA job id: 6607297515
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | task id: 44075483
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | errors: (none)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 11:32:54] 2025-04-19 15:32:35,653 | INFO     | pilot state: finished 
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | transexitcode: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | exeerrorcode: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | exeerrordiag: 
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | exitcode: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | exitmsg: OK
[2025-04-19 11:32:54] 2025-04-19 15:32:35,654 | INFO     | cpuconsumptiontime: 47435 s
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | nevents: 400
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | neventsw: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | pid: 30690
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | pgrp: 30690
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | corecount: 12
[2025-04-19 11:32:54] 2025-04-19 15:32:35,655 | INFO     | event service: False
[2025-04-19 11:32:54] 2025-04-19 15:32:35,656 | INFO     | sizes: {0: 2426824, 5: 2427030, 11: 2427086, 5057: 2453263, 5058: 2462204, 5059: 2462260, 5064: 2462558}
[2025-04-19 11:32:54] 2025-04-19 15:32:35,656 | INFO     | --------------------------------------------------
[2025-04-19 11:32:54] 2025-04-19 15:32:35,656 | INFO     | 
[2025-04-19 11:32:54] 2025-04-19 15:32:35,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 11:32:54] 2025-04-19 15:32:35,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 11:32:54] 2025-04-19 15:32:35,684 | INFO     | job 6607297515 has completed (purged errors)
[2025-04-19 11:32:54] 2025-04-19 15:32:35,684 | INFO     | overall cleanup function is called
[2025-04-19 11:32:54] 2025-04-19 15:32:36,688 | INFO     | --- collectZombieJob: --- 10, [30690]
[2025-04-19 11:32:54] 2025-04-19 15:32:36,688 | INFO     | zombie collector waiting for pid 30690
[2025-04-19 11:32:54] 2025-04-19 15:32:36,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 11:32:54] 2025-04-19 15:32:36,688 | INFO     | collected zombie processes
[2025-04-19 11:32:54] 2025-04-19 15:32:36,688 | INFO     | will attempt to kill all subprocesses of pid=30690
[2025-04-19 11:32:54] 2025-04-19 15:32:36,781 | INFO     | process IDs to be killed: [30690] (in reverse order)
[2025-04-19 11:32:54] 2025-04-19 15:32:36,866 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 11:32:54] 2025-04-19 15:32:36,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 11:32:54] 2025-04-19 15:32:36,870 | INFO     | did not find any defunct processes belonging to 30690
[2025-04-19 11:32:54] 2025-04-19 15:32:36,874 | INFO     | did not find any defunct processes belonging to 30690
[2025-04-19 11:32:54] 2025-04-19 15:32:36,874 | INFO     | ready for new job
[2025-04-19 11:32:54] 2025-04-19 15:32:36,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 11:32:54] 2025-04-19 15:32:36,876 | INFO     | **************************************
[2025-04-19 11:32:54] 2025-04-19 15:32:36,876 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 11:32:54] 2025-04-19 15:32:36,876 | INFO     | **************************************
[2025-04-19 11:32:54] 2025-04-19 15:32:36,876 | INFO     | 
[2025-04-19 11:32:54] 2025-04-19 15:32:36,877 | INFO     | architecture information:
[2025-04-19 11:32:54] 2025-04-19 15:32:36,877 | INFO     | executing command: cat /etc/os-release
[2025-04-19 11:32:54] 2025-04-19 15:32:36,893 | INFO     | cat /etc/os-release:
[2025-04-19 11:32:54] NAME="CentOS Linux"
[2025-04-19 11:32:54] VERSION="7 (Core)"
[2025-04-19 11:32:54] ID="centos"
[2025-04-19 11:32:54] ID_LIKE="rhel fedora"
[2025-04-19 11:32:54] VERSION_ID="7"
[2025-04-19 11:32:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 11:32:54] ANSI_COLOR="0;31"
[2025-04-19 11:32:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 11:32:54] HOME_URL="https://www.centos.org/"
[2025-04-19 11:32:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 11:32:54] 
[2025-04-19 11:32:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 11:32:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 11:32:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 11:32:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 11:32:54] 
[2025-04-19 11:32:54] 2025-04-19 15:32:36,893 | INFO     | **************************************
[2025-04-19 11:32:54] 2025-04-19 15:32:37,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | INFO     | sufficient remaining disk space (29382148096 B)
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | INFO     | update_server=False
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 11:32:54] 2025-04-19 15:32:37,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 11:32:54] 2025-04-19 15:32:37,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 11:32:54] 2025-04-19 15:32:37,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 11:32:54] 2025-04-19 15:32:37,868 | INFO     | aborting loop
[2025-04-19 11:32:54] 2025-04-19 15:32:37,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 11:32:54] 2025-04-19 15:32:38,101 | INFO     | all data control threads have been joined
[2025-04-19 11:32:54] 2025-04-19 15:32:38,349 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 11:32:54] 2025-04-19 15:32:38,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 11:32:54] 2025-04-19 15:32:38,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 11:32:54] 2025-04-19 15:32:38,413 | INFO     | [job] retrieve thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,418 | INFO     | [job] queue monitor thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,458 | INFO     | all payload control threads have been joined
[2025-04-19 11:32:54] 2025-04-19 15:32:38,473 | INFO     | [job] validate thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,480 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,496 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,625 | INFO     | [payload] failed_post thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,867 | INFO     | all job control threads have been joined
[2025-04-19 11:32:54] 2025-04-19 15:32:38,873 | INFO     | [job] job monitor thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:38,908 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,107 | INFO     | [data] control thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,162 | INFO     | [payload] validate_post thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,464 | INFO     | [payload] control thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,657 | INFO     | [data] copytool_in thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,872 | INFO     | [job] control thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:39,999 | INFO     | [data] copytool_out thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:41,419 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:47,452 | INFO     | job.realtimelogging is not enabled
[2025-04-19 11:32:54] 2025-04-19 15:32:48,454 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 11:32:54] 2025-04-19 15:32:49,256 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287698249536)>', '<ExcThread(monitor, started 140287120766720)>']
[2025-04-19 11:32:54] 2025-04-19 15:32:49,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 11:32:54] 2025-04-19 15:32:49,395 | INFO     | [monitor] control thread has ended
[2025-04-19 11:32:54] 2025-04-19 15:32:54,281 | INFO     | all workflow threads have been joined
[2025-04-19 11:32:54] 2025-04-19 15:32:54,281 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 11:32:54] 2025-04-19 15:32:54,282 | INFO     | traces error code: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:54,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 11:32:54] 2025-04-19 15:32:54,365 [wrapper] ==== pilot stdout END ====
[2025-04-19 11:32:54] 2025-04-19 15:32:54,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 11:32:54] 2025-04-19 15:32:54,373 [wrapper] pilotpid: 24262
[2025-04-19 11:32:54] 2025-04-19 15:32:54,377 [wrapper] Pilot exit status: 0
[2025-04-19 11:32:54] 2025-04-19 15:32:54,392 [wrapper] pandaids: 6607297515
[2025-04-19 11:32:54] 2025-04-19 15:32:54,431 [wrapper] cleanup supervisor_pilot 20698 24263
[2025-04-19 11:32:54] 2025-04-19 15:32:54,435 [wrapper] Test setup, not cleaning
[2025-04-19 11:32:54] 2025-04-19 15:32:54,439 [wrapper] apfmon messages muted
[2025-04-19 11:32:54] 2025-04-19 15:32:54,443 [wrapper] ==== wrapper stdout END ====
[2025-04-19 11:32:54] 2025-04-19 15:32:54,447 [wrapper] ==== wrapper stderr END ====
[2025-04-19 11:32:54]  *** Error codes and diagnostics ***
[2025-04-19 11:32:54]     "exeErrorCode": 0,
[2025-04-19 11:32:54]     "exeErrorDiag": "",
[2025-04-19 11:32:54]     "pilotErrorCode": 0,
[2025-04-19 11:32:54]     "pilotErrorDiag": "",
[2025-04-19 11:32:54]  *** Listing of results directory ***
[2025-04-19 11:32:54] total 424260
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 23:34 queuedata.json
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 23:35 pilot3.tar.gz
[2025-04-19 11:32:54] -rwx------ 1 boincer umatlas     37140 Apr 18 23:35 runpilot2-wrapper.sh
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas       100 Apr 19 10:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 11:32:54] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 10:07 run_atlas
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas       105 Apr 19 10:07 job.xml
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas 228611582 Apr 19 10:07 EVNT.44075481._002993.pool.root.1
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 10:07 start_atlas.sh
[2025-04-19 11:32:54] drwxrwx--x 2 boincer umatlas      4096 Apr 19 10:07 shared
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas    508890 Apr 19 10:07 input.tar.gz
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas         0 Apr 19 10:07 boinc_lockfile
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas      2579 Apr 19 10:07 pandaJob.out
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas       424 Apr 19 10:07 setup.sh.local
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas    991292 Apr 19 10:07 agis_schedconf.cvmfs.json
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas   1618536 Apr 19 10:07 agis_ddmendpoints.agis.ALL.json
[2025-04-19 11:32:54] drwx------ 4 boincer umatlas      4096 Apr 19 10:07 pilot3
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas      5867 Apr 19 11:29 init_data.xml
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas 200252547 Apr 19 11:31 HITS.44075483._077149.pool.root.1
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas        95 Apr 19 11:31 pilot_heartbeat.json
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas       529 Apr 19 11:32 boinc_task_state.xml
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas      1049 Apr 19 11:32 memory_monitor_summary.json
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas    374515 Apr 19 11:32 log.44075483._077149.job.log.tgz.1
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas      7747 Apr 19 11:32 heartbeat.json
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas        27 Apr 19 11:32 wrapper_checkpoint.txt
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 11:32 boinc_mmap_file
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas      4425 Apr 19 11:32 pilotlog.txt
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas    482565 Apr 19 11:32 log.44075483._077149.job.log.1
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas       357 Apr 19 11:32 output.list
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas       620 Apr 19 11:32 runtime_log
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas    880640 Apr 19 11:32 result.tar.gz
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 11:32 runtime_log.err
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas       658 Apr 19 11:32 8uALDm39DQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmB45KDmigHMPm.diag
[2025-04-19 11:32:54] -rw-r--r-- 1 boincer umatlas     21246 Apr 19 11:32 stderr.txt
[2025-04-19 11:32:54] HITS file was successfully produced:
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas 200252547 Apr 19 11:31 shared/HITS.pool.root.1
[2025-04-19 11:32:54]  *** Contents of shared directory: ***
[2025-04-19 11:32:54] total 420196
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas 228611582 Apr 19 10:07 ATLAS.root_0
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 10:07 start_atlas.sh
[2025-04-19 11:32:54] -rw-r--r-- 2 boincer umatlas    508890 Apr 19 10:07 input.tar.gz
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas 200252547 Apr 19 11:31 HITS.pool.root.1
[2025-04-19 11:32:54] -rw------- 1 boincer umatlas    880640 Apr 19 11:32 result.tar.gz
11:32:55 (20663): run_atlas exited; CPU time 47412.366481
11:32:55 (20663): called boinc_finish(0)

</stderr_txt>
]]>

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