Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:54:26 (32077): wrapper (7.7.26015): starting
08:54:26 (32077): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 08:54:26] Arguments: --nthreads 12
[2025-04-19 08:54:26] Threads: 12
[2025-04-19 08:54:26] Checking for CVMFS
[2025-04-19 08:54:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 08:54:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 08:54:26] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 08:54:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 08:54:26] 2.11.2.0 3563 372207 195684 145038 1 66 16588643 20275200 1 130560 0 24396815 99.990 7240933 55074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 08:54:26] CVMFS is ok
[2025-04-19 08:54:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 08:54:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 08:54:26] Further information can be found at the LHC@home message board.
[2025-04-19 08:54:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 08:54:26] Checking for apptainer binary...
[2025-04-19 08:54:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 08:54:26] Running /usr/bin/apptainer --version
[2025-04-19 08:54:27] apptainer version 1.3.2-1.el7
[2025-04-19 08:54:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 08:54:27] c-205-13.aglt2.org
[2025-04-19 08:54:27] apptainer works
[2025-04-19 08:54:27] Set ATHENA_PROC_NUMBER=12
[2025-04-19 08:54:27] Set ATHENA_CORE_NUMBER=12
[2025-04-19 08:54:27] Starting ATLAS job with PandaID=6607612180
[2025-04-19 08:54:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 10:19:08]  *** The last 200 lines of the pilot log: ***
[2025-04-19 10:19:08]  filesize=377946
[2025-04-19 10:19:08]  filetype=log
[2025-04-19 10:19:08]  guid=080d27fc-9618-4e5f-8f98-5d3672d97b43
[2025-04-19 10:19:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 10:19:08]  is_altstaged=None
[2025-04-19 10:19:08]  is_tar=False
[2025-04-19 10:19:08]  lfn=log.44075483._081225.job.log.tgz.1
[2025-04-19 10:19:08]  mtime=0
[2025-04-19 10:19:08]  protocol_id=None
[2025-04-19 10:19:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 10:19:08]  replicas=None
[2025-04-19 10:19:08]  scope=mc23_13p6TeV
[2025-04-19 10:19:08]  status=None
[2025-04-19 10:19:08]  status_code=0
[2025-04-19 10:19:08]  storage_token=
[2025-04-19 10:19:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607612180/log.44075483._081225.job.log.tgz.1
[2025-04-19 10:19:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/21/log.44075483._081225.job.log.tgz.1
[2025-04-19 10:19:08]  workdir=None
[2025-04-19 10:19:08] ]
[2025-04-19 10:19:08] 2025-04-19 14:18:43,125 | INFO     | transferring file log.44075483._081225.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607612180/log.44075483._081225.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 10:19:08] 2025-04-19 14:18:43,125 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607612180/log.44075483._081225.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._081225.job
[2025-04-19 10:19:08] 2025-04-19 14:18:43,146 | INFO     | adding to output.list: log.44075483._081225.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/21/log.44075483._081225.job.log.tg
[2025-04-19 10:19:08] 2025-04-19 14:18:43,147 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 10:19:08] 2025-04-19 14:18:43,147 | INFO     | summary of transferred files:
[2025-04-19 10:19:08] 2025-04-19 14:18:43,148 | INFO     |  -- lfn=log.44075483._081225.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 10:19:08] 2025-04-19 14:18:43,148 | INFO     | stage-out finished correctly
[2025-04-19 10:19:08] 2025-04-19 14:18:43,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 10:19:08] 2025-04-19 14:18:43,770 | INFO     | job 6607612180 has state=finished
[2025-04-19 10:19:08] 2025-04-19 14:18:43,771 | INFO     | preparing for final server update for job 6607612180 in state='finished'
[2025-04-19 10:19:08] 2025-04-19 14:18:43,771 | INFO     | this job has now completed (state=finished)
[2025-04-19 10:19:08] 2025-04-19 14:18:43,771 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 10:19:08] 2025-04-19 14:18:43,771 | INFO     | log transfer has been attempted: DONE
[2025-04-19 10:19:08] 2025-04-19 14:18:43,772 | INFO     | job 6607612180 has finished - writing final server update
[2025-04-19 10:19:08] 2025-04-19 14:18:43,772 | INFO     | total number of processed events: 400 (read)
[2025-04-19 10:19:08] 2025-04-19 14:18:43,774 | INFO     | executing command: lscpu
[2025-04-19 10:19:08] 2025-04-19 14:18:43,801 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 10:19:08] 2025-04-19 14:18:45,275 | INFO     | monitor loop #376: job 0:6607612180 is in state 'finished'
[2025-04-19 10:19:08] 2025-04-19 14:18:45,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 10:19:08] 2025-04-19 14:18:47,779 | INFO     | monitor loop #377: job 0:6607612180 is in state 'finished'
[2025-04-19 10:19:08] 2025-04-19 14:18:47,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,529 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 10:19:08] 2025-04-19 14:18:49,529 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607612180/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,530 | INFO     | extracted standard info from prmon json
[2025-04-19 10:19:08] 2025-04-19 14:18:49,530 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 10:19:08] 2025-04-19 14:18:49,530 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 10:19:08] 2025-04-19 14:18:49,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 10:19:08] 2025-04-19 14:18:49,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 10:19:08] 2025-04-19 14:18:49,533 | INFO     | fitting pss+swap vs Time
[2025-04-19 10:19:08] 2025-04-19 14:18:49,534 | INFO     | sum of square deviations: 136095575.0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,534 | INFO     | sum of deviations: 21531861099.499996
[2025-04-19 10:19:08] 2025-04-19 14:18:49,534 | INFO     | mean x: 1745069901.5
[2025-04-19 10:19:08] 2025-04-19 14:18:49,534 | INFO     | mean y: 2566284.486842105
[2025-04-19 10:19:08] 2025-04-19 14:18:49,535 | INFO     | -- intersect: -276087253153.1851
[2025-04-19 10:19:08] 2025-04-19 14:18:49,535 | INFO     | intersect: -276087253153.1851
[2025-04-19 10:19:08] 2025-04-19 14:18:49,535 | INFO     | chi2: 1.8969461091449495
[2025-04-19 10:19:08] 2025-04-19 14:18:49,535 | INFO     | -- intersect: -276087253153.1851
[2025-04-19 10:19:08] 2025-04-19 14:18:49,535 | INFO     | current memory leak: 158.21 B/s (using 76 data points, chi2=1.90)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,536 | INFO     | ..............................
[2025-04-19 10:19:08] 2025-04-19 14:18:49,536 | INFO     | . Timing measurements:
[2025-04-19 10:19:08] 2025-04-19 14:18:49,536 | INFO     | . get job = 0 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,536 | INFO     | . initial setup = 2 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,536 | INFO     | . payload setup = 7 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,537 | INFO     | . stage-in = 0 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,537 | INFO     | . payload execution = 5015 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,537 | INFO     | . stage-out = 0 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,537 | INFO     | . log creation = 0 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,537 | INFO     | ..............................
[2025-04-19 10:19:08] 2025-04-19 14:18:49,622 | INFO     | 
[2025-04-19 10:19:08] 2025-04-19 14:18:49,622 | INFO     | job summary report
[2025-04-19 10:19:08] 2025-04-19 14:18:49,622 | INFO     | --------------------------------------------------
[2025-04-19 10:19:08] 2025-04-19 14:18:49,622 | INFO     | PanDA job id: 6607612180
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | task id: 44075483
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | errors: (none)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | pilot state: finished 
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | transexitcode: 0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,623 | INFO     | exeerrorcode: 0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | exeerrordiag: 
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | exitcode: 0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | exitmsg: OK
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | cpuconsumptiontime: 48087 s
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | nevents: 400
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | neventsw: 0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,624 | INFO     | pid: 9970
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | pgrp: 9970
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | corecount: 12
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | event service: False
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | sizes: {0: 2426824, 5: 2427030, 11: 2427086, 5026: 2453234, 5027: 2462231, 5033: 2462345}
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | --------------------------------------------------
[2025-04-19 10:19:08] 2025-04-19 14:18:49,625 | INFO     | 
[2025-04-19 10:19:08] 2025-04-19 14:18:49,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 10:19:08] 2025-04-19 14:18:49,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,648 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,651 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,652 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 10:19:08] 2025-04-19 14:18:49,652 | INFO     | job 6607612180 has completed (purged errors)
[2025-04-19 10:19:08] 2025-04-19 14:18:49,652 | INFO     | overall cleanup function is called
[2025-04-19 10:19:08] 2025-04-19 14:18:50,660 | INFO     | --- collectZombieJob: --- 10, [9970]
[2025-04-19 10:19:08] 2025-04-19 14:18:50,661 | INFO     | zombie collector waiting for pid 9970
[2025-04-19 10:19:08] 2025-04-19 14:18:50,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 10:19:08] 2025-04-19 14:18:50,661 | INFO     | collected zombie processes
[2025-04-19 10:19:08] 2025-04-19 14:18:50,661 | INFO     | will attempt to kill all subprocesses of pid=9970
[2025-04-19 10:19:08] 2025-04-19 14:18:50,754 | INFO     | process IDs to be killed: [9970] (in reverse order)
[2025-04-19 10:19:08] 2025-04-19 14:18:50,804 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 10:19:08] 2025-04-19 14:18:50,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 10:19:08] 2025-04-19 14:18:50,808 | INFO     | did not find any defunct processes belonging to 9970
[2025-04-19 10:19:08] 2025-04-19 14:18:50,810 | INFO     | did not find any defunct processes belonging to 9970
[2025-04-19 10:19:08] 2025-04-19 14:18:50,810 | INFO     | ready for new job
[2025-04-19 10:19:08] 2025-04-19 14:18:50,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 10:19:08] 2025-04-19 14:18:50,811 | INFO     | **************************************
[2025-04-19 10:19:08] 2025-04-19 14:18:50,811 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 10:19:08] 2025-04-19 14:18:50,812 | INFO     | **************************************
[2025-04-19 10:19:08] 2025-04-19 14:18:50,812 | INFO     | 
[2025-04-19 10:19:08] 2025-04-19 14:18:50,812 | INFO     | architecture information:
[2025-04-19 10:19:08] 2025-04-19 14:18:50,813 | INFO     | executing command: cat /etc/os-release
[2025-04-19 10:19:08] 2025-04-19 14:18:50,826 | INFO     | cat /etc/os-release:
[2025-04-19 10:19:08] NAME="CentOS Linux"
[2025-04-19 10:19:08] VERSION="7 (Core)"
[2025-04-19 10:19:08] ID="centos"
[2025-04-19 10:19:08] ID_LIKE="rhel fedora"
[2025-04-19 10:19:08] VERSION_ID="7"
[2025-04-19 10:19:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 10:19:08] ANSI_COLOR="0;31"
[2025-04-19 10:19:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 10:19:08] HOME_URL="https://www.centos.org/"
[2025-04-19 10:19:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 10:19:08] 
[2025-04-19 10:19:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 10:19:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 10:19:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 10:19:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 10:19:08] 
[2025-04-19 10:19:08] 2025-04-19 14:18:50,826 | INFO     | **************************************
[2025-04-19 10:19:08] 2025-04-19 14:18:51,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 10:19:08] 2025-04-19 14:18:51,345 | INFO     | sufficient remaining disk space (29387390976 B)
[2025-04-19 10:19:08] 2025-04-19 14:18:51,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 10:19:08] 2025-04-19 14:18:51,345 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 10:19:08] 2025-04-19 14:18:51,345 | INFO     | update_server=False
[2025-04-19 10:19:08] 2025-04-19 14:18:51,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 10:19:08] 2025-04-19 14:18:51,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 10:19:08] 2025-04-19 14:18:51,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 10:19:08] 2025-04-19 14:18:51,346 | INFO     | aborting loop
[2025-04-19 10:19:08] 2025-04-19 14:18:51,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 10:19:08] 2025-04-19 14:18:51,368 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 10:19:08] 2025-04-19 14:18:51,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 10:19:08] 2025-04-19 14:18:51,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 10:19:08] 2025-04-19 14:18:51,409 | INFO     | all job control threads have been joined
[2025-04-19 10:19:08] 2025-04-19 14:18:51,906 | INFO     | all data control threads have been joined
[2025-04-19 10:19:08] 2025-04-19 14:18:52,028 | INFO     | all payload control threads have been joined
[2025-04-19 10:19:08] 2025-04-19 14:18:52,351 | INFO     | [job] retrieve thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,352 | INFO     | [job] job monitor thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,353 | INFO     | [job] queue monitor thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,415 | INFO     | [job] control thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,659 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,887 | INFO     | [data] copytool_in thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,911 | INFO     | [data] control thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:52,986 | INFO     | [payload] validate_post thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,034 | INFO     | [payload] control thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,176 | INFO     | [payload] failed_post thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,352 | INFO     | [data] copytool_out thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,405 | INFO     | [job] validate thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,667 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:53,800 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:18:54,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 10:19:08] 2025-04-19 14:18:58,284 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:19:01,793 | INFO     | job.realtimelogging is not enabled
[2025-04-19 10:19:08] 2025-04-19 14:19:02,798 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 10:19:08] 2025-04-19 14:19:03,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276294281024)>', '<ExcThread(monitor, started 140275108280064)>']
[2025-04-19 10:19:08] 2025-04-19 14:19:04,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 10:19:08] 2025-04-19 14:19:04,432 | INFO     | [monitor] control thread has ended
[2025-04-19 10:19:08] 2025-04-19 14:19:08,497 | INFO     | all workflow threads have been joined
[2025-04-19 10:19:08] 2025-04-19 14:19:08,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 10:19:08] 2025-04-19 14:19:08,502 | INFO     | traces error code: 0
[2025-04-19 10:19:08] 2025-04-19 14:19:08,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 10:19:08] 2025-04-19 14:19:08,595 [wrapper] ==== pilot stdout END ====
[2025-04-19 10:19:08] 2025-04-19 14:19:08,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 10:19:08] 2025-04-19 14:19:08,603 [wrapper] pilotpid: 3391
[2025-04-19 10:19:08] 2025-04-19 14:19:08,607 [wrapper] Pilot exit status: 0
[2025-04-19 10:19:08] 2025-04-19 14:19:08,622 [wrapper] pandaids: 6607612180
[2025-04-19 10:19:08] 2025-04-19 14:19:08,661 [wrapper] cleanup supervisor_pilot 25551 3392
[2025-04-19 10:19:08] 2025-04-19 14:19:08,665 [wrapper] Test setup, not cleaning
[2025-04-19 10:19:08] 2025-04-19 14:19:08,669 [wrapper] apfmon messages muted
[2025-04-19 10:19:08] 2025-04-19 14:19:08,673 [wrapper] ==== wrapper stdout END ====
[2025-04-19 10:19:08] 2025-04-19 14:19:08,676 [wrapper] ==== wrapper stderr END ====
[2025-04-19 10:19:08]  *** Error codes and diagnostics ***
[2025-04-19 10:19:08]     "exeErrorCode": 0,
[2025-04-19 10:19:08]     "exeErrorDiag": "",
[2025-04-19 10:19:08]     "pilotErrorCode": 0,
[2025-04-19 10:19:08]     "pilotErrorDiag": "",
[2025-04-19 10:19:08]  *** Listing of results directory ***
[2025-04-19 10:19:08] total 422128
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 05:50 pilot3.tar.gz
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 06:00 queuedata.json
[2025-04-19 10:19:08] -rwx------ 1 boincer umatlas     37140 Apr 19 06:01 runpilot2-wrapper.sh
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas       100 Apr 19 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 10:19:08] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 08:54 run_atlas
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas       105 Apr 19 08:54 job.xml
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas 223479674 Apr 19 08:54 EVNT.44075481._003150.pool.root.1
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 08:54 start_atlas.sh
[2025-04-19 10:19:08] drwxrwx--x 2 boincer umatlas      4096 Apr 19 08:54 shared
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas    508890 Apr 19 08:54 input.tar.gz
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas         0 Apr 19 08:54 boinc_lockfile
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas      2579 Apr 19 08:54 pandaJob.out
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas       424 Apr 19 08:54 setup.sh.local
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas    991292 Apr 19 08:54 agis_schedconf.cvmfs.json
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas   1618536 Apr 19 08:54 agis_ddmendpoints.agis.ALL.json
[2025-04-19 10:19:08] drwx------ 4 boincer umatlas      4096 Apr 19 08:54 pilot3
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas      5868 Apr 19 10:10 init_data.xml
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas 203209561 Apr 19 10:18 HITS.44075483._081225.pool.root.1
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas       530 Apr 19 10:18 boinc_task_state.xml
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas      1046 Apr 19 10:18 memory_monitor_summary.json
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas    377946 Apr 19 10:18 log.44075483._081225.job.log.tgz.1
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas        95 Apr 19 10:18 pilot_heartbeat.json
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas      7749 Apr 19 10:18 heartbeat.json
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 10:19 boinc_mmap_file
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas        27 Apr 19 10:19 wrapper_checkpoint.txt
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas      4425 Apr 19 10:19 pilotlog.txt
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas    476718 Apr 19 10:19 log.44075483._081225.job.log.1
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas       357 Apr 19 10:19 output.list
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas       620 Apr 19 10:19 runtime_log
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas    870400 Apr 19 10:19 result.tar.gz
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 10:19 runtime_log.err
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas       658 Apr 19 10:19 FTqLDmFCKQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmfdhLDmSsgGym.diag
[2025-04-19 10:19:08] -rw-r--r-- 1 boincer umatlas     21050 Apr 19 10:19 stderr.txt
[2025-04-19 10:19:08] HITS file was successfully produced:
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas 203209561 Apr 19 10:18 shared/HITS.pool.root.1
[2025-04-19 10:19:08]  *** Contents of shared directory: ***
[2025-04-19 10:19:08] total 418064
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas 223479674 Apr 19 08:54 ATLAS.root_0
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 08:54 start_atlas.sh
[2025-04-19 10:19:08] -rw-r--r-- 2 boincer umatlas    508890 Apr 19 08:54 input.tar.gz
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas 203209561 Apr 19 10:18 HITS.pool.root.1
[2025-04-19 10:19:08] -rw------- 1 boincer umatlas    870400 Apr 19 10:19 result.tar.gz
10:19:09 (32077): run_atlas exited; CPU time 48075.973314
10:19:09 (32077): called boinc_finish(0)

</stderr_txt>
]]>

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