Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:16:20 (27062): wrapper (7.7.26015): starting
08:16:20 (27062): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 08:16:20] Arguments: --nthreads 12
[2025-04-19 08:16:20] Threads: 12
[2025-04-19 08:16:20] Checking for CVMFS
[2025-04-19 08:16:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 08:16:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 08:16:20] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 08:16:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 08:16:21] 2.11.2.0 5277 369448 165652 145037 0 56 10908226 20275200 1 130560 0 24365977 99.952 8072398 52823 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 08:16:21] CVMFS is ok
[2025-04-19 08:16:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 08:16:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 08:16:21] Further information can be found at the LHC@home message board.
[2025-04-19 08:16:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 08:16:21] Checking for apptainer binary...
[2025-04-19 08:16:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 08:16:21] Running /usr/bin/apptainer --version
[2025-04-19 08:16:21] apptainer version 1.3.2-1.el7
[2025-04-19 08:16:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 08:16:22] c-205-15.aglt2.org
[2025-04-19 08:16:22] apptainer works
[2025-04-19 08:16:22] Set ATHENA_PROC_NUMBER=12
[2025-04-19 08:16:22] Set ATHENA_CORE_NUMBER=12
[2025-04-19 08:16:22] Starting ATLAS job with PandaID=6607611738
[2025-04-19 08:16:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 09:40:52]  *** The last 200 lines of the pilot log: ***
[2025-04-19 09:40:52]  filesize=369264
[2025-04-19 09:40:52]  filetype=log
[2025-04-19 09:40:52]  guid=fa29fa0a-b7f6-4b0d-be36-9f1f9f78d6df
[2025-04-19 09:40:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 09:40:52]  is_altstaged=None
[2025-04-19 09:40:52]  is_tar=False
[2025-04-19 09:40:52]  lfn=log.44075483._080792.job.log.tgz.1
[2025-04-19 09:40:52]  mtime=0
[2025-04-19 09:40:52]  protocol_id=None
[2025-04-19 09:40:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 09:40:52]  replicas=None
[2025-04-19 09:40:52]  scope=mc23_13p6TeV
[2025-04-19 09:40:52]  status=None
[2025-04-19 09:40:52]  status_code=0
[2025-04-19 09:40:52]  storage_token=
[2025-04-19 09:40:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607611738/log.44075483._080792.job.log.tgz.1
[2025-04-19 09:40:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/49/log.44075483._080792.job.log.tgz.1
[2025-04-19 09:40:52]  workdir=None
[2025-04-19 09:40:52] ]
[2025-04-19 09:40:52] 2025-04-19 13:40:35,333 | INFO     | transferring file log.44075483._080792.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607611738/log.44075483._080792.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 09:40:52] 2025-04-19 13:40:35,333 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607611738/log.44075483._080792.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._080792.job
[2025-04-19 09:40:52] 2025-04-19 13:40:35,355 | INFO     | adding to output.list: log.44075483._080792.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/49/log.44075483._080792.job.log.tg
[2025-04-19 09:40:52] 2025-04-19 13:40:35,356 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 09:40:52] 2025-04-19 13:40:35,356 | INFO     | summary of transferred files:
[2025-04-19 09:40:52] 2025-04-19 13:40:35,356 | INFO     |  -- lfn=log.44075483._080792.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 09:40:52] 2025-04-19 13:40:35,357 | INFO     | stage-out finished correctly
[2025-04-19 09:40:52] 2025-04-19 13:40:35,444 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 09:40:52] 2025-04-19 13:40:35,527 | INFO     | job 6607611738 has state=finished
[2025-04-19 09:40:52] 2025-04-19 13:40:35,527 | INFO     | preparing for final server update for job 6607611738 in state='finished'
[2025-04-19 09:40:52] 2025-04-19 13:40:35,528 | INFO     | this job has now completed (state=finished)
[2025-04-19 09:40:52] 2025-04-19 13:40:35,528 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 09:40:52] 2025-04-19 13:40:35,528 | INFO     | log transfer has been attempted: DONE
[2025-04-19 09:40:52] 2025-04-19 13:40:35,528 | INFO     | job 6607611738 has finished - writing final server update
[2025-04-19 09:40:52] 2025-04-19 13:40:35,529 | INFO     | total number of processed events: 400 (read)
[2025-04-19 09:40:52] 2025-04-19 13:40:35,530 | INFO     | executing command: lscpu
[2025-04-19 09:40:52] 2025-04-19 13:40:35,556 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 09:40:52] 2025-04-19 13:40:37,691 | INFO     | monitor loop #376: job 0:6607611738 is in state 'finished'
[2025-04-19 09:40:52] 2025-04-19 13:40:37,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,194 | INFO     | monitor loop #377: job 0:6607611738 is in state 'finished'
[2025-04-19 09:40:52] 2025-04-19 13:40:40,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,288 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 09:40:52] 2025-04-19 13:40:40,288 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607611738/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,289 | INFO     | extracted standard info from prmon json
[2025-04-19 09:40:52] 2025-04-19 13:40:40,289 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 09:40:52] 2025-04-19 13:40:40,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 09:40:52] 2025-04-19 13:40:40,290 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 09:40:52] 2025-04-19 13:40:40,290 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 09:40:52] 2025-04-19 13:40:40,293 | INFO     | fitting pss+swap vs Time
[2025-04-19 09:40:52] 2025-04-19 13:40:40,293 | INFO     | sum of square deviations: 136095575.0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,294 | INFO     | sum of deviations: 20280401142.500004
[2025-04-19 09:40:52] 2025-04-19 13:40:40,294 | INFO     | mean x: 1745067617.5
[2025-04-19 09:40:52] 2025-04-19 13:40:40,294 | INFO     | mean y: 2691640.7236842103
[2025-04-19 09:40:52] 2025-04-19 13:40:40,294 | INFO     | -- intersect: -260040085677.25125
[2025-04-19 09:40:52] 2025-04-19 13:40:40,295 | INFO     | intersect: -260040085677.25125
[2025-04-19 09:40:52] 2025-04-19 13:40:40,295 | INFO     | chi2: 2.408162409610215
[2025-04-19 09:40:52] 2025-04-19 13:40:40,295 | INFO     | -- intersect: -260040085677.25125
[2025-04-19 09:40:52] 2025-04-19 13:40:40,295 | INFO     | current memory leak: 149.02 B/s (using 76 data points, chi2=2.41)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,296 | INFO     | ..............................
[2025-04-19 09:40:52] 2025-04-19 13:40:40,296 | INFO     | . Timing measurements:
[2025-04-19 09:40:52] 2025-04-19 13:40:40,296 | INFO     | . get job = 0 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,296 | INFO     | . initial setup = 2 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,296 | INFO     | . payload setup = 8 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,297 | INFO     | . stage-in = 0 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,297 | INFO     | . payload execution = 5009 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,297 | INFO     | . stage-out = 0 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,297 | INFO     | . log creation = 0 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,297 | INFO     | ..............................
[2025-04-19 09:40:52] 2025-04-19 13:40:40,383 | INFO     | 
[2025-04-19 09:40:52] 2025-04-19 13:40:40,383 | INFO     | job summary report
[2025-04-19 09:40:52] 2025-04-19 13:40:40,383 | INFO     | --------------------------------------------------
[2025-04-19 09:40:52] 2025-04-19 13:40:40,383 | INFO     | PanDA job id: 6607611738
[2025-04-19 09:40:52] 2025-04-19 13:40:40,383 | INFO     | task id: 44075483
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | errors: (none)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | pilot state: finished 
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | transexitcode: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | exeerrorcode: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,384 | INFO     | exeerrordiag: 
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | exitcode: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | exitmsg: OK
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | cpuconsumptiontime: 46491 s
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | nevents: 400
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | neventsw: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,385 | INFO     | pid: 4749
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | pgrp: 4749
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | corecount: 12
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | event service: False
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | sizes: {0: 2426652, 1: 2426851, 6: 2427057, 11: 2427085, 5021: 2453233, 5024: 2462358, 5028: 2462472}
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | --------------------------------------------------
[2025-04-19 09:40:52] 2025-04-19 13:40:40,386 | INFO     | 
[2025-04-19 09:40:52] 2025-04-19 13:40:40,387 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 09:40:52] 2025-04-19 13:40:40,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 09:40:52] 2025-04-19 13:40:40,414 | INFO     | job 6607611738 has completed (purged errors)
[2025-04-19 09:40:52] 2025-04-19 13:40:40,414 | INFO     | overall cleanup function is called
[2025-04-19 09:40:52] 2025-04-19 13:40:41,422 | INFO     | --- collectZombieJob: --- 10, [4749]
[2025-04-19 09:40:52] 2025-04-19 13:40:41,423 | INFO     | zombie collector waiting for pid 4749
[2025-04-19 09:40:52] 2025-04-19 13:40:41,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 09:40:52] 2025-04-19 13:40:41,423 | INFO     | collected zombie processes
[2025-04-19 09:40:52] 2025-04-19 13:40:41,423 | INFO     | will attempt to kill all subprocesses of pid=4749
[2025-04-19 09:40:52] 2025-04-19 13:40:41,511 | INFO     | process IDs to be killed: [4749] (in reverse order)
[2025-04-19 09:40:52] 2025-04-19 13:40:41,563 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 09:40:52] 2025-04-19 13:40:41,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 09:40:52] 2025-04-19 13:40:41,567 | INFO     | did not find any defunct processes belonging to 4749
[2025-04-19 09:40:52] 2025-04-19 13:40:41,569 | INFO     | did not find any defunct processes belonging to 4749
[2025-04-19 09:40:52] 2025-04-19 13:40:41,569 | INFO     | ready for new job
[2025-04-19 09:40:52] 2025-04-19 13:40:41,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 09:40:52] 2025-04-19 13:40:41,571 | INFO     | **************************************
[2025-04-19 09:40:52] 2025-04-19 13:40:41,571 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 09:40:52] 2025-04-19 13:40:41,571 | INFO     | **************************************
[2025-04-19 09:40:52] 2025-04-19 13:40:41,571 | INFO     | 
[2025-04-19 09:40:52] 2025-04-19 13:40:41,571 | INFO     | architecture information:
[2025-04-19 09:40:52] 2025-04-19 13:40:41,572 | INFO     | executing command: cat /etc/os-release
[2025-04-19 09:40:52] 2025-04-19 13:40:41,586 | INFO     | cat /etc/os-release:
[2025-04-19 09:40:52] NAME="CentOS Linux"
[2025-04-19 09:40:52] VERSION="7 (Core)"
[2025-04-19 09:40:52] ID="centos"
[2025-04-19 09:40:52] ID_LIKE="rhel fedora"
[2025-04-19 09:40:52] VERSION_ID="7"
[2025-04-19 09:40:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 09:40:52] ANSI_COLOR="0;31"
[2025-04-19 09:40:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 09:40:52] HOME_URL="https://www.centos.org/"
[2025-04-19 09:40:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 09:40:52] 
[2025-04-19 09:40:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 09:40:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 09:40:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 09:40:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 09:40:52] 
[2025-04-19 09:40:52] 2025-04-19 13:40:41,586 | INFO     | **************************************
[2025-04-19 09:40:52] 2025-04-19 13:40:42,089 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 09:40:52] 2025-04-19 13:40:42,105 | INFO     | sufficient remaining disk space (29391585280 B)
[2025-04-19 09:40:52] 2025-04-19 13:40:42,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 09:40:52] 2025-04-19 13:40:42,106 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 09:40:52] 2025-04-19 13:40:42,106 | INFO     | update_server=False
[2025-04-19 09:40:52] 2025-04-19 13:40:42,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 09:40:52] 2025-04-19 13:40:42,106 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 09:40:52] 2025-04-19 13:40:42,106 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 09:40:52] 2025-04-19 13:40:42,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 09:40:52] 2025-04-19 13:40:42,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 09:40:52] 2025-04-19 13:40:42,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 09:40:52] 2025-04-19 13:40:42,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 09:40:52] 2025-04-19 13:40:42,108 | INFO     | aborting loop
[2025-04-19 09:40:52] 2025-04-19 13:40:42,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 09:40:52] 2025-04-19 13:40:42,123 | INFO     | all data control threads have been joined
[2025-04-19 09:40:52] 2025-04-19 13:40:42,186 | INFO     | all job control threads have been joined
[2025-04-19 09:40:52] 2025-04-19 13:40:43,111 | INFO     | [job] retrieve thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,113 | INFO     | [job] queue monitor thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,114 | INFO     | [job] job monitor thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,129 | INFO     | [data] control thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,153 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,192 | INFO     | [job] control thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 09:40:52] 2025-04-19 13:40:43,515 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,552 | INFO     | [data] copytool_in thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,606 | INFO     | all payload control threads have been joined
[2025-04-19 09:40:52] 2025-04-19 13:40:43,880 | INFO     | [payload] failed_post thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:43,902 | INFO     | [payload] validate_post thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:44,167 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:44,173 | INFO     | [job] validate thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:44,373 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:44,607 | INFO     | [payload] control thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:45,458 | INFO     | [data] copytool_out thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:46,113 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 09:40:52] 2025-04-19 13:40:47,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360579667776)>', '<ExcThread(monitor, started 140359816419072)>']
[2025-04-19 09:40:52] 2025-04-19 13:40:48,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 09:40:52] 2025-04-19 13:40:48,139 | INFO     | [monitor] control thread has ended
[2025-04-19 09:40:52] 2025-04-19 13:40:52,233 | INFO     | all workflow threads have been joined
[2025-04-19 09:40:52] 2025-04-19 13:40:52,233 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 09:40:52] 2025-04-19 13:40:52,233 | INFO     | traces error code: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:52,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 09:40:52] 2025-04-19 13:40:52,328 [wrapper] ==== pilot stdout END ====
[2025-04-19 09:40:52] 2025-04-19 13:40:52,332 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 09:40:52] 2025-04-19 13:40:52,336 [wrapper] pilotpid: 30679
[2025-04-19 09:40:52] 2025-04-19 13:40:52,339 [wrapper] Pilot exit status: 0
[2025-04-19 09:40:52] 2025-04-19 13:40:52,355 [wrapper] pandaids: 6607611738
[2025-04-19 09:40:52] 2025-04-19 13:40:52,394 [wrapper] cleanup supervisor_pilot 23603 30680
[2025-04-19 09:40:52] 2025-04-19 13:40:52,398 [wrapper] Test setup, not cleaning
[2025-04-19 09:40:52] 2025-04-19 13:40:52,402 [wrapper] apfmon messages muted
[2025-04-19 09:40:52] 2025-04-19 13:40:52,406 [wrapper] ==== wrapper stdout END ====
[2025-04-19 09:40:52] 2025-04-19 13:40:52,410 [wrapper] ==== wrapper stderr END ====
[2025-04-19 09:40:52]  *** Error codes and diagnostics ***
[2025-04-19 09:40:52]     "exeErrorCode": 0,
[2025-04-19 09:40:52]     "exeErrorDiag": "",
[2025-04-19 09:40:52]     "pilotErrorCode": 0,
[2025-04-19 09:40:52]     "pilotErrorDiag": "",
[2025-04-19 09:40:52]  *** Listing of results directory ***
[2025-04-19 09:40:52] total 419068
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 05:06 pilot3.tar.gz
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 05:18 queuedata.json
[2025-04-19 09:40:52] -rwx------ 1 boincer umatlas     37140 Apr 19 05:19 runpilot2-wrapper.sh
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas       100 Apr 19 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 09:40:52] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 08:16 run_atlas
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas       105 Apr 19 08:16 job.xml
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas 226213847 Apr 19 08:16 EVNT.44075481._003133.pool.root.1
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 08:16 start_atlas.sh
[2025-04-19 09:40:52] drwxrwx--x 2 boincer umatlas      4096 Apr 19 08:16 shared
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas    508888 Apr 19 08:16 input.tar.gz
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas         0 Apr 19 08:16 boinc_lockfile
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas      2578 Apr 19 08:16 pandaJob.out
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas       424 Apr 19 08:16 setup.sh.local
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas    991292 Apr 19 08:16 agis_schedconf.cvmfs.json
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas   1618536 Apr 19 08:16 agis_ddmendpoints.agis.ALL.json
[2025-04-19 09:40:52] drwx------ 4 boincer umatlas      4096 Apr 19 08:16 pilot3
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas      5867 Apr 19 09:38 init_data.xml
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas 197349019 Apr 19 09:40 HITS.44075483._080792.pool.root.1
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas       529 Apr 19 09:40 boinc_task_state.xml
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas      1048 Apr 19 09:40 memory_monitor_summary.json
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas    369264 Apr 19 09:40 log.44075483._080792.job.log.tgz.1
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas        95 Apr 19 09:40 pilot_heartbeat.json
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas      7753 Apr 19 09:40 heartbeat.json
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 09:40 boinc_mmap_file
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas        27 Apr 19 09:40 wrapper_checkpoint.txt
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas      4476 Apr 19 09:40 pilotlog.txt
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas    477129 Apr 19 09:40 log.44075483._080792.job.log.1
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas       357 Apr 19 09:40 output.list
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas       620 Apr 19 09:40 runtime_log
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas    870400 Apr 19 09:40 result.tar.gz
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 09:40 runtime_log.err
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas       658 Apr 19 09:40 nPZMDmKXJQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmqZhLDm4VCwVo.diag
[2025-04-19 09:40:52] -rw-r--r-- 1 boincer umatlas     21118 Apr 19 09:40 stderr.txt
[2025-04-19 09:40:52] HITS file was successfully produced:
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas 197349019 Apr 19 09:40 shared/HITS.pool.root.1
[2025-04-19 09:40:52]  *** Contents of shared directory: ***
[2025-04-19 09:40:52] total 415012
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas 226213847 Apr 19 08:16 ATLAS.root_0
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 08:16 start_atlas.sh
[2025-04-19 09:40:52] -rw-r--r-- 2 boincer umatlas    508888 Apr 19 08:16 input.tar.gz
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas 197349019 Apr 19 09:40 HITS.pool.root.1
[2025-04-19 09:40:52] -rw------- 1 boincer umatlas    870400 Apr 19 09:40 result.tar.gz
09:40:53 (27062): run_atlas exited; CPU time 46478.559968
09:40:53 (27062): called boinc_finish(0)

</stderr_txt>
]]>

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