Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:09:56 (28186): wrapper (7.7.26015): starting
07:09:56 (28186): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 07:09:56] Arguments: --nthreads 12
[2025-04-19 07:09:56] Threads: 12
[2025-04-19 07:09:56] Checking for CVMFS
[2025-04-19 07:09:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 07:09:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 07:09:56] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 07:09:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 07:09:57] 2.11.2.0 10568 277207 164544 145036 2 55 19509088 20275201 1 130560 0 23987941 99.990 7311615 51327 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 07:09:57] CVMFS is ok
[2025-04-19 07:09:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 07:09:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 07:09:57] Further information can be found at the LHC@home message board.
[2025-04-19 07:09:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 07:09:57] Checking for apptainer binary...
[2025-04-19 07:09:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 07:09:57] Running /usr/bin/apptainer --version
[2025-04-19 07:09:57] apptainer version 1.3.2-1.el7
[2025-04-19 07:09:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 07:09:58] c-205-24.aglt2.org
[2025-04-19 07:09:58] apptainer works
[2025-04-19 07:09:58] Set ATHENA_PROC_NUMBER=12
[2025-04-19 07:09:58] Set ATHENA_CORE_NUMBER=12
[2025-04-19 07:09:58] Starting ATLAS job with PandaID=6607610765
[2025-04-19 07:09:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 08:32:30]  *** The last 200 lines of the pilot log: ***
[2025-04-19 08:32:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/eb/log.44075483._080018.job.log.tgz.1
[2025-04-19 08:32:30]  workdir=None
[2025-04-19 08:32:30] ]
[2025-04-19 08:32:30] 2025-04-19 12:32:03,781 | INFO     | transferring file log.44075483._080018.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/log.44075483._080018.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 08:32:30] 2025-04-19 12:32:03,782 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/log.44075483._080018.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._080018.job
[2025-04-19 08:32:30] 2025-04-19 12:32:03,802 | INFO     | adding to output.list: log.44075483._080018.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/eb/log.44075483._080018.job.log.tg
[2025-04-19 08:32:30] 2025-04-19 12:32:03,803 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 08:32:30] 2025-04-19 12:32:03,803 | INFO     | summary of transferred files:
[2025-04-19 08:32:30] 2025-04-19 12:32:03,803 | INFO     |  -- lfn=log.44075483._080018.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 08:32:30] 2025-04-19 12:32:03,803 | INFO     | stage-out finished correctly
[2025-04-19 08:32:30] 2025-04-19 12:32:03,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 08:32:30] 2025-04-19 12:32:04,143 | WARNING  | process 5946 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 08:32:30] 2025-04-19 12:32:04,143 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,144 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,144 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4357249 B
[2025-04-19 08:32:30] 2025-04-19 12:32:04,145 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15305 B
[2025-04-19 08:32:30] 2025-04-19 12:32:04,145 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 08:32:30] 2025-04-19 12:32:04,162 | INFO     | sufficient remaining disk space (29396828160 B)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,162 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,164 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6607610765: 4657514 B (within 2537553920 B limit)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,164 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6607610765/HITS.44075483._080018.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,164 | INFO     | total size of present files: 0 B (workdir size: 4657514 B)
[2025-04-19 08:32:30] 2025-04-19 12:32:04,164 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/HITS.44075483._080018.pool.root.1 since it does not exist
[2025-04-19 08:32:30] 2025-04-19 12:32:04,257 | INFO     | number of running child processes to parent process 5946: 1
[2025-04-19 08:32:30] 2025-04-19 12:32:04,258 | INFO     | maximum number of monitored processes: 6
[2025-04-19 08:32:30] 2025-04-19 12:32:06,191 | INFO     | job 6607610765 has state=finished
[2025-04-19 08:32:30] 2025-04-19 12:32:06,191 | INFO     | preparing for final server update for job 6607610765 in state='finished'
[2025-04-19 08:32:30] 2025-04-19 12:32:06,269 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-19 08:32:30] 2025-04-19 12:32:06,269 | INFO     | this job has now completed (state=finished)
[2025-04-19 08:32:30] 2025-04-19 12:32:06,269 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 08:32:30] 2025-04-19 12:32:06,270 | INFO     | log transfer has been attempted: DONE
[2025-04-19 08:32:30] 2025-04-19 12:32:06,270 | INFO     | job 6607610765 has finished - writing final server update
[2025-04-19 08:32:30] 2025-04-19 12:32:06,270 | INFO     | total number of processed events: 400 (read)
[2025-04-19 08:32:30] 2025-04-19 12:32:06,271 | INFO     | executing command: lscpu
[2025-04-19 08:32:30] 2025-04-19 12:32:06,299 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 08:32:30] 2025-04-19 12:32:06,761 | INFO     | monitor loop #368: job 0:6607610765 is in state 'finished'
[2025-04-19 08:32:30] 2025-04-19 12:32:06,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 08:32:30] 2025-04-19 12:32:09,263 | INFO     | monitor loop #369: job 0:6607610765 is in state 'finished'
[2025-04-19 08:32:30] 2025-04-19 12:32:09,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,021 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 08:32:30] 2025-04-19 12:32:11,022 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607610765/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,022 | INFO     | extracted standard info from prmon json
[2025-04-19 08:32:30] 2025-04-19 12:32:11,023 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 08:32:30] 2025-04-19 12:32:11,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 08:32:30] 2025-04-19 12:32:11,023 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 08:32:30] 2025-04-19 12:32:11,023 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 08:32:30] 2025-04-19 12:32:11,026 | INFO     | fitting pss+swap vs Time
[2025-04-19 08:32:30] 2025-04-19 12:32:11,026 | INFO     | sum of square deviations: 120605052.0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,027 | INFO     | sum of deviations: 28644951631.000004
[2025-04-19 08:32:30] 2025-04-19 12:32:11,027 | INFO     | mean x: 1745063542.0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,027 | INFO     | mean y: 2524151.095890411
[2025-04-19 08:32:30] 2025-04-19 12:32:11,028 | INFO     | -- intersect: -414468179394.6523
[2025-04-19 08:32:30] 2025-04-19 12:32:11,028 | INFO     | intersect: -414468179394.6523
[2025-04-19 08:32:30] 2025-04-19 12:32:11,028 | INFO     | chi2: 2.605217418195993
[2025-04-19 08:32:30] 2025-04-19 12:32:11,028 | INFO     | -- intersect: -414468179394.6523
[2025-04-19 08:32:30] 2025-04-19 12:32:11,028 | INFO     | current memory leak: 237.51 B/s (using 73 data points, chi2=2.61)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,029 | INFO     | ..............................
[2025-04-19 08:32:30] 2025-04-19 12:32:11,029 | INFO     | . Timing measurements:
[2025-04-19 08:32:30] 2025-04-19 12:32:11,029 | INFO     | . get job = 0 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,029 | INFO     | . initial setup = 2 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | . payload setup = 7 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | . stage-in = 0 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | . payload execution = 4884 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | . stage-out = 0 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | . log creation = 0 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,030 | INFO     | ..............................
[2025-04-19 08:32:30] 2025-04-19 12:32:11,115 | INFO     | 
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | job summary report
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | --------------------------------------------------
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | PanDA job id: 6607610765
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | task id: 44075483
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | errors: (none)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | pilot state: finished 
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | transexitcode: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | exeerrorcode: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | exeerrordiag: 
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | exitcode: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | exitmsg: OK
[2025-04-19 08:32:30] 2025-04-19 12:32:11,117 | INFO     | cpuconsumptiontime: 44844 s
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | nevents: 400
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | neventsw: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | pid: 5946
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | pgrp: 5946
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | corecount: 12
[2025-04-19 08:32:30] 2025-04-19 12:32:11,118 | INFO     | event service: False
[2025-04-19 08:32:30] 2025-04-19 12:32:11,119 | INFO     | sizes: {0: 2426653, 1: 2426852, 5: 2427058, 11: 2427114, 4895: 2453206, 4896: 2462331, 4903: 2462473}
[2025-04-19 08:32:30] 2025-04-19 12:32:11,119 | INFO     | --------------------------------------------------
[2025-04-19 08:32:30] 2025-04-19 12:32:11,119 | INFO     | 
[2025-04-19 08:32:30] 2025-04-19 12:32:11,119 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 08:32:30] 2025-04-19 12:32:11,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 08:32:30] 2025-04-19 12:32:11,146 | INFO     | job 6607610765 has completed (purged errors)
[2025-04-19 08:32:30] 2025-04-19 12:32:11,146 | INFO     | overall cleanup function is called
[2025-04-19 08:32:30] 2025-04-19 12:32:12,155 | INFO     | --- collectZombieJob: --- 10, [5946]
[2025-04-19 08:32:30] 2025-04-19 12:32:12,155 | INFO     | zombie collector waiting for pid 5946
[2025-04-19 08:32:30] 2025-04-19 12:32:12,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 08:32:30] 2025-04-19 12:32:12,155 | INFO     | collected zombie processes
[2025-04-19 08:32:30] 2025-04-19 12:32:12,155 | INFO     | will attempt to kill all subprocesses of pid=5946
[2025-04-19 08:32:30] 2025-04-19 12:32:12,249 | INFO     | process IDs to be killed: [5946] (in reverse order)
[2025-04-19 08:32:30] 2025-04-19 12:32:12,301 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 08:32:30] 2025-04-19 12:32:12,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 08:32:30] 2025-04-19 12:32:12,305 | INFO     | did not find any defunct processes belonging to 5946
[2025-04-19 08:32:30] 2025-04-19 12:32:12,309 | INFO     | did not find any defunct processes belonging to 5946
[2025-04-19 08:32:30] 2025-04-19 12:32:12,309 | INFO     | ready for new job
[2025-04-19 08:32:30] 2025-04-19 12:32:12,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 08:32:30] 2025-04-19 12:32:12,311 | INFO     | **************************************
[2025-04-19 08:32:30] 2025-04-19 12:32:12,311 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 08:32:30] 2025-04-19 12:32:12,311 | INFO     | **************************************
[2025-04-19 08:32:30] 2025-04-19 12:32:12,311 | INFO     | 
[2025-04-19 08:32:30] 2025-04-19 12:32:12,312 | INFO     | architecture information:
[2025-04-19 08:32:30] 2025-04-19 12:32:12,312 | INFO     | executing command: cat /etc/os-release
[2025-04-19 08:32:30] 2025-04-19 12:32:12,325 | INFO     | cat /etc/os-release:
[2025-04-19 08:32:30] NAME="CentOS Linux"
[2025-04-19 08:32:30] VERSION="7 (Core)"
[2025-04-19 08:32:30] ID="centos"
[2025-04-19 08:32:30] ID_LIKE="rhel fedora"
[2025-04-19 08:32:30] VERSION_ID="7"
[2025-04-19 08:32:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 08:32:30] ANSI_COLOR="0;31"
[2025-04-19 08:32:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 08:32:30] HOME_URL="https://www.centos.org/"
[2025-04-19 08:32:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 08:32:30] 
[2025-04-19 08:32:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 08:32:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 08:32:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 08:32:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 08:32:30] 
[2025-04-19 08:32:30] 2025-04-19 12:32:12,326 | INFO     | **************************************
[2025-04-19 08:32:30] 2025-04-19 12:32:12,829 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 08:32:30] 2025-04-19 12:32:12,875 | INFO     | sufficient remaining disk space (29402071040 B)
[2025-04-19 08:32:30] 2025-04-19 12:32:12,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 08:32:30] 2025-04-19 12:32:12,876 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 08:32:30] 2025-04-19 12:32:12,876 | INFO     | update_server=False
[2025-04-19 08:32:30] 2025-04-19 12:32:12,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 08:32:30] 2025-04-19 12:32:12,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 08:32:30] 2025-04-19 12:32:12,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 08:32:30] 2025-04-19 12:32:12,877 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 08:32:30] 2025-04-19 12:32:12,877 | INFO     | aborting loop
[2025-04-19 08:32:30] 2025-04-19 12:32:12,947 | INFO     | PID=31894 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-19 08:32:30] 2025-04-19 12:32:12,947 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 08:32:30] 2025-04-19 12:32:12,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 08:32:30] 2025-04-19 12:32:12,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 08:32:30] 2025-04-19 12:32:13,257 | INFO     | all payload control threads have been joined
[2025-04-19 08:32:30] 2025-04-19 12:32:13,268 | INFO     | all job control threads have been joined
[2025-04-19 08:32:30] 2025-04-19 12:32:13,512 | INFO     | all data control threads have been joined
[2025-04-19 08:32:30] 2025-04-19 12:32:13,882 | INFO     | [job] retrieve thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:13,883 | INFO     | [job] queue monitor thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:13,883 | INFO     | [job] job monitor thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,149 | INFO     | [data] copytool_in thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,258 | INFO     | [payload] control thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,273 | INFO     | [job] control thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,460 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 08:32:30] 2025-04-19 12:32:14,517 | INFO     | [data] control thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,643 | INFO     | [job] validate thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:14,882 | INFO     | [data] copytool_out thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:15,201 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:15,242 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:15,255 | INFO     | [payload] validate_post thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:15,401 | INFO     | [payload] failed_post thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:18,504 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:23,658 | INFO     | job.realtimelogging is not enabled
[2025-04-19 08:32:30] 2025-04-19 12:32:24,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 08:32:30] 2025-04-19 12:32:25,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648531318592)>', '<ExcThread(monitor, started 140647478580992)>']
[2025-04-19 08:32:30] 2025-04-19 12:32:26,014 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 08:32:30] 2025-04-19 12:32:26,014 | INFO     | [monitor] control thread has ended
[2025-04-19 08:32:30] 2025-04-19 12:32:30,304 | INFO     | all workflow threads have been joined
[2025-04-19 08:32:30] 2025-04-19 12:32:30,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 08:32:30] 2025-04-19 12:32:30,304 | INFO     | traces error code: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:30,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 08:32:30] 2025-04-19 12:32:30,399 [wrapper] ==== pilot stdout END ====
[2025-04-19 08:32:30] 2025-04-19 12:32:30,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 08:32:30] 2025-04-19 12:32:30,407 [wrapper] pilotpid: 31894
[2025-04-19 08:32:30] 2025-04-19 12:32:30,411 [wrapper] Pilot exit status: 0
[2025-04-19 08:32:30] 2025-04-19 12:32:30,426 [wrapper] pandaids: 6607610765
[2025-04-19 08:32:30] 2025-04-19 12:32:30,466 [wrapper] cleanup supervisor_pilot 23657 31895
[2025-04-19 08:32:30] 2025-04-19 12:32:30,470 [wrapper] Test setup, not cleaning
[2025-04-19 08:32:30] 2025-04-19 12:32:30,474 [wrapper] apfmon messages muted
[2025-04-19 08:32:30] 2025-04-19 12:32:30,478 [wrapper] ==== wrapper stdout END ====
[2025-04-19 08:32:30] 2025-04-19 12:32:30,482 [wrapper] ==== wrapper stderr END ====
[2025-04-19 08:32:30]  *** Error codes and diagnostics ***
[2025-04-19 08:32:30]     "exeErrorCode": 0,
[2025-04-19 08:32:30]     "exeErrorDiag": "",
[2025-04-19 08:32:30]     "pilotErrorCode": 0,
[2025-04-19 08:32:30]     "pilotErrorDiag": "",
[2025-04-19 08:32:30]  *** Listing of results directory ***
[2025-04-19 08:32:30] total 407400
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 04:07 pilot3.tar.gz
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 04:13 queuedata.json
[2025-04-19 08:32:30] -rwx------ 1 boincer umatlas     37140 Apr 19 04:14 runpilot2-wrapper.sh
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas       100 Apr 19 07:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 08:32:30] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 07:09 run_atlas
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas       105 Apr 19 07:09 job.xml
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas 224249787 Apr 19 07:09 EVNT.44075481._003102.pool.root.1
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 07:09 start_atlas.sh
[2025-04-19 08:32:30] drwxrwx--x 2 boincer umatlas      4096 Apr 19 07:09 shared
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas    508893 Apr 19 07:09 input.tar.gz
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas         0 Apr 19 07:09 boinc_lockfile
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas      2579 Apr 19 07:09 pandaJob.out
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas       424 Apr 19 07:09 setup.sh.local
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas    991292 Apr 19 07:10 agis_schedconf.cvmfs.json
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas   1618536 Apr 19 07:10 agis_ddmendpoints.agis.ALL.json
[2025-04-19 08:32:30] drwx------ 4 boincer umatlas      4096 Apr 19 07:10 pilot3
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas      5868 Apr 19 08:29 init_data.xml
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas 187379953 Apr 19 08:31 HITS.44075483._080018.pool.root.1
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas       530 Apr 19 08:31 boinc_task_state.xml
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas      1048 Apr 19 08:31 memory_monitor_summary.json
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas    370752 Apr 19 08:32 log.44075483._080018.job.log.tgz.1
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas        95 Apr 19 08:32 pilot_heartbeat.json
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas      7753 Apr 19 08:32 heartbeat.json
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 08:32 boinc_mmap_file
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas        27 Apr 19 08:32 wrapper_checkpoint.txt
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas      4742 Apr 19 08:32 pilotlog.txt
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas    468675 Apr 19 08:32 log.44075483._080018.job.log.1
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas       357 Apr 19 08:32 output.list
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas       620 Apr 19 08:32 runtime_log
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas    860160 Apr 19 08:32 result.tar.gz
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas       658 Apr 19 08:32 XANMDm7VIQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmqQhLDm3xP4Oo.diag
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 08:32 runtime_log.err
[2025-04-19 08:32:30] -rw-r--r-- 1 boincer umatlas     22541 Apr 19 08:32 stderr.txt
[2025-04-19 08:32:30] HITS file was successfully produced:
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas 187379953 Apr 19 08:31 shared/HITS.pool.root.1
[2025-04-19 08:32:30]  *** Contents of shared directory: ***
[2025-04-19 08:32:30] total 403352
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas 224249787 Apr 19 07:09 ATLAS.root_0
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 07:09 start_atlas.sh
[2025-04-19 08:32:30] -rw-r--r-- 2 boincer umatlas    508893 Apr 19 07:09 input.tar.gz
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas 187379953 Apr 19 08:31 HITS.pool.root.1
[2025-04-19 08:32:30] -rw------- 1 boincer umatlas    860160 Apr 19 08:32 result.tar.gz
08:32:32 (28186): run_atlas exited; CPU time 44775.207328
08:32:32 (28186): called boinc_finish(0)

</stderr_txt>
]]>

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