Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 18:45:31 (24456): Detected: vboxwrapper 26206
2025-04-19 18:45:31 (24456): Detected: BOINC client v7.22.2
2025-04-19 18:45:33 (24456): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-19 18:45:33 (24456): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 18:45:34 (24456): Create VM. (boinc_d4096ef1cad42ae7, slot#1)
2025-04-19 18:45:35 (24456): Setting Memory Size for VM. (4200MB)
2025-04-19 18:45:35 (24456): Setting CPU Count for VM. (2)
2025-04-19 18:45:35 (24456): Setting Chipset Options for VM.
2025-04-19 18:45:36 (24456): Setting Graphics Controller Options for VM.
2025-04-19 18:45:36 (24456): Setting Boot Options for VM.
2025-04-19 18:45:36 (24456): Setting Network Configuration for NAT.
2025-04-19 18:45:37 (24456): Enabling VM Network Access.
2025-04-19 18:45:37 (24456): Disabling USB Support for VM.
2025-04-19 18:45:37 (24456): Disabling COM Port Support for VM.
2025-04-19 18:45:38 (24456): Disabling LPT Port Support for VM.
2025-04-19 18:45:38 (24456): Disabling Audio Support for VM.
2025-04-19 18:45:38 (24456): Disabling Clipboard Support for VM.
2025-04-19 18:45:39 (24456): Disabling Drag and Drop Support for VM.
2025-04-19 18:45:39 (24456): Adding storage controller(s) to VM.
2025-04-19 18:45:39 (24456): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 18:45:41 (24456): Adding VirtualBox Guest Additions to VM.
2025-04-19 18:45:41 (24456): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 18:45:41 (24456): forwarding host port 1087 to guest port 80
2025-04-19 18:45:42 (24456): Enabling remote desktop for VM.
2025-04-19 18:45:42 (24456): Required extension pack not installed, remote desktop not enabled.
2025-04-19 18:45:42 (24456): Enabling shared directory for VM.
2025-04-19 18:45:42 (24456): Starting VM using VBoxManage interface. (boinc_d4096ef1cad42ae7, slot#1)
2025-04-19 18:45:49 (24456): Successfully started VM. (PID = '1504')
2025-04-19 18:45:49 (24456): Reporting VM Process ID to BOINC.
2025-04-19 18:45:49 (24456): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-19 18:45:49 (24456): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 18:45:49 (24456): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 18:45:49 (24456): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 18:45:49 (24456): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 18:45:49 (24456): Detected: Web Application Enabled (http://localhost:1087)
2025-04-19 18:45:50 (24456): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 18:46:05 (24456): Preference change detected
2025-04-19 18:46:05 (24456): Setting CPU throttle for VM. (50%)
2025-04-19 18:46:05 (24456): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 18:46:05 (24456): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 18:46:06 (24456): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 18:46:06 (24456): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 18:46:11 (24456): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 18:46:11 (24456): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 18:46:11 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 18:46:12 (24456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 18:46:15 (24456): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 18:46:35 (24456): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 18:46:46 (24456): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 18:46:46 (24456): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 18:47:12 (24456): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000328 main     Log opened 2025-04-19T18:46:36.252250000Z
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000523 main     OS Product: Linux
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000600 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000666 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000775 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000777 main     Process ID: 1266
2025-04-19 18:47:12 (24456): Guest Log: 00:00:00.000778 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 18:47:13 (24456): Guest Log: 00:00:00.003471 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 18:47:13 (24456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 18:47:13 (24456): Guest Log: [INFO] Mounting shared directory
2025-04-19 18:47:13 (24456): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 18:47:22 (24456): Guest Log: 00:00:10.013811 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 753 359 759 000ns (GuestNow=1 745 059 642 905 450 000 ns GuestLast=1 745 088 396 265 209 000 ns fSetTimeLastLoop=true )
2025-04-19 18:47:24 (24456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 18:47:24 (24456): Guest Log: [INFO] Detected branch: prod
2025-04-19 18:47:25 (24456): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 18:47:25 (24456): Guest Log: Copying input files
2025-04-19 18:47:29 (24456): Guest Log: Copied input files into RunAtlas.
2025-04-19 18:47:29 (24456): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 18:47:29 (24456): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 18:47:30 (24456): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 18:47:30 (24456): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 18:47:42 (24456): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 18:47:43 (24456): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 18:47:43 (24456): Guest Log: 2.6.3.0 1545 0 32100 145035 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 18:47:48 (24456): Guest Log: copied the webapp to /var/www
2025-04-19 18:47:48 (24456): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-19 18:47:48 (24456): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-19 18:47:49 (24456): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 18:47:49 (24456): Guest Log:  *** Starting ATLAS job. (PandaID=6607578171 taskID=44075483) ***
2025-04-19 18:58:55 (24456): Guest Log:  *** Job finished ***
2025-04-19 18:58:55 (24456): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:41,866 | INFO     | [data] copytool_out thread has finished
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:42,688 | INFO     | [job] queue monitor thread has finished
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:45,851 | INFO     | [data] queue_monitor thread has finished
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:47,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040333858624)>', '<ExcThread(monitor, started 140040106997504)>']
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:48,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:48,565 | INFO     | [monitor] control thread has ended
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:52,938 | INFO     | all workflow threads have been joined
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:52,938 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:52,939 | INFO     | traces error code: 0
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:52,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,187 [wrapper] ==== pilot stdout END ====
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,196 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,203 [wrapper] pilotpid: 5876
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,213 [wrapper] Pilot exit status: 0
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,651 [wrapper] pandaids: 6607578171
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,699 [wrapper] cleanup supervisor_pilot  5882 5877
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,709 [wrapper] Test setup, not cleaning
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,720 [wrapper] apfmon messages muted
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,729 [wrapper] ==== wrapper stdout END ====
2025-04-19 18:58:55 (24456): Guest Log: 2025-04-19 10:58:53,738 [wrapper] ==== wrapper stderr END ====
2025-04-19 18:58:55 (24456): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 18:58:55 (24456): Guest Log:     "exeErrorCode": 65,
2025-04-19 18:58:55 (24456): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-19 18:58:55 (24456): Guest Log:     "pilotErrorCode": 1305,
2025-04-19 18:58:55 (24456): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-19 18:58:55 (24456): Guest Log:  *** Listing of results directory ***
2025-04-19 18:58:55 (24456): Guest Log: total 3932
2025-04-19 18:58:55 (24456): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 19 07:37 pilot3.tar.gz
2025-04-19 18:58:55 (24456): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 19 07:49 runpilot2-wrapper.sh
2025-04-19 18:58:55 (24456): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 19 07:49 queuedata.json
2025-04-19 18:58:55 (24456): Guest Log: -rwxr-xr-x. 1 atlas atlas    6280 Apr 19 10:47 init_data.xml
2025-04-19 18:58:55 (24456): Guest Log: -rwxr-xr-x. 1 atlas atlas  508888 Apr 19 10:47 input.tar.gz
2025-04-19 18:58:55 (24456): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 19 10:47 start_atlas.sh
2025-04-19 18:58:55 (24456): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 19 10:47 EVNT.44075481._003094.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 18:58:55 (24456): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 19 10:47 pandaJob.out
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas     424 Apr 19 10:48 setup.sh.local
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas  991292 Apr 19 10:50 agis_schedconf.cvmfs.json
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 19 10:50 agis_ddmendpoints.agis.ALL.json
2025-04-19 18:58:55 (24456): Guest Log: drwx------. 4 atlas atlas    4096 Apr 19 10:50 pilot3
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas    1007 Apr 19 10:56 memory_monitor_summary.json
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas   22159 Apr 19 10:56 log.44075483._079778.job.log.tgz.1
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas      95 Apr 19 10:58 pilot_heartbeat.json
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas    8404 Apr 19 10:58 heartbeat.json
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 19 10:58 pilotlog.txt
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas   92211 Apr 19 10:58 log.44075483._079778.job.log.1
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas     188 Apr 19 10:58 output.list
2025-04-19 18:58:55 (24456): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 19 10:58 runtime_log
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas  133120 Apr 19 10:58 result.tar.gz
2025-04-19 18:58:55 (24456): Guest Log: -rw-r--r--. 1 atlas atlas   11256 Apr 19 10:58 runtime_log.err
2025-04-19 18:58:55 (24456): Guest Log: -rw-------. 1 atlas atlas     796 Apr 19 10:58 LYMODmI8HQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmAOhLDmksTXnm.diag
2025-04-19 18:58:55 (24456): Guest Log: Looking for outputfile HITS.44075483._079778.pool.root.1
2025-04-19 18:58:55 (24456): Guest Log: No HITS file was produced
2025-04-19 18:58:55 (24456): Guest Log: Successfully finished the ATLAS job!
2025-04-19 18:58:55 (24456): Guest Log: Copying the results back to the shared directory!
2025-04-19 18:58:55 (24456): Guest Log:  *** Contents of shared directory: ***
2025-04-19 18:58:55 (24456): Guest Log: total 221792
2025-04-19 18:58:55 (24456): Guest Log: -rwxrwxrwx. 1 root root 226437547 Apr 19 10:45 ATLAS.root_0
2025-04-19 18:58:55 (24456): Guest Log: -rwxrwxrwx. 1 root root      6280 Apr 19 10:45 init_data.xml
2025-04-19 18:58:55 (24456): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 19 10:44 input.tar.gz
2025-04-19 18:58:55 (24456): Guest Log: -rwxrwxrwx. 1 root root    133120 Apr 19 10:58 result.tar.gz
2025-04-19 18:58:55 (24456): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 10:44 start_atlas.sh
2025-04-19 18:58:55 (24456): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 18:58:55 (24456): VM Completion File Detected.
2025-04-19 18:58:55 (24456): Powering off VM.
2025-04-19 18:58:57 (24456): Successfully stopped VM.
2025-04-19 18:58:57 (24456): Deregistering VM. (boinc_d4096ef1cad42ae7, slot#1)
2025-04-19 18:58:57 (24456): Removing network bandwidth throttle group from VM.
2025-04-19 18:58:57 (24456): Removing VM from VirtualBox.
18:59:02 (24456): called boinc_finish(0)

</stderr_txt>
]]>

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