Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:39:11 (7882): wrapper (7.7.26015): starting
06:39:11 (7882): wrapper: running run_atlas (--nthreads 10)
[2025-04-19 06:39:11] Arguments: --nthreads 10
[2025-04-19 06:39:11] Threads: 10
[2025-04-19 06:39:11] Checking for CVMFS
[2025-04-19 06:39:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 06:39:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 06:39:12] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 06:39:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 06:39:13] 2.11.2.0 23440 214758 346768 145035 1 285 17273473 18432000 7370 130560 0 40742505 99.330 63369840 39607 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 06:39:13] CVMFS is ok
[2025-04-19 06:39:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 06:39:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 06:39:13] Further information can be found at the LHC@home message board.
[2025-04-19 06:39:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 06:39:13] Checking for apptainer binary...
[2025-04-19 06:39:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 06:39:13] Running /usr/bin/apptainer --version
[2025-04-19 06:39:13] apptainer version 1.3.2-1.el7
[2025-04-19 06:39:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 06:39:16] c-211-31.aglt2.org
[2025-04-19 06:39:16] apptainer works
[2025-04-19 06:39:16] Set ATHENA_PROC_NUMBER=10
[2025-04-19 06:39:16] Set ATHENA_CORE_NUMBER=10
[2025-04-19 06:39:16] Starting ATLAS job with PandaID=6607578018
[2025-04-19 06:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:27:23 (37505): wrapper (7.7.26015): starting
14:27:23 (37505): wrapper: running run_atlas (--nthreads 10)
[2025-04-19 14:27:23] Arguments: --nthreads 10
[2025-04-19 14:27:23] Threads: 10
[2025-04-19 14:27:23] This job has been restarted, cleaning up previous attempt
[2025-04-19 14:27:23] Checking for CVMFS
[2025-04-19 14:27:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 14:27:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 14:27:24] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 14:27:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 14:27:25] 2.11.2.0 23440 215226 346984 145048 2 319 17979775 18432001 8067 130560 0 41200409 99.336 63579213 39609 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 14:27:25] CVMFS is ok
[2025-04-19 14:27:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 14:27:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 14:27:25] Further information can be found at the LHC@home message board.
[2025-04-19 14:27:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 14:27:25] Checking for apptainer binary...
[2025-04-19 14:27:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 14:27:25] Running /usr/bin/apptainer --version
[2025-04-19 14:27:26] apptainer version 1.3.2-1.el7
[2025-04-19 14:27:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 14:27:29] c-211-31.aglt2.org
[2025-04-19 14:27:29] apptainer works
[2025-04-19 14:27:29] Set ATHENA_PROC_NUMBER=10
[2025-04-19 14:27:29] Set ATHENA_CORE_NUMBER=10
[2025-04-19 14:27:29] Starting ATLAS job with PandaID=6607578018
[2025-04-19 14:27:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 23:37:39]  *** The last 200 lines of the pilot log: ***
[2025-04-19 23:37:39] 2025-04-20 03:37:25,205 | INFO     | sum of deviations: 575984724028.7202
[2025-04-19 23:37:39] 2025-04-20 03:37:25,205 | INFO     | mean x: 1745103809.4990723
[2025-04-19 23:37:39] 2025-04-20 03:37:25,205 | INFO     | mean y: 2502110.439703154
[2025-04-19 23:37:39] 2025-04-20 03:37:25,205 | INFO     | -- intersect: -20698300262.931267
[2025-04-19 23:37:39] 2025-04-20 03:37:25,205 | INFO     | intersect: -20698300262.931267
[2025-04-19 23:37:39] 2025-04-20 03:37:25,206 | INFO     | chi2: 7.775829405722248
[2025-04-19 23:37:39] 2025-04-20 03:37:25,207 | INFO     | sum of square deviations: 47217534531.99255
[2025-04-19 23:37:39] 2025-04-20 03:37:25,215 | INFO     | sum of deviations: 607828997256.9814
[2025-04-19 23:37:39] 2025-04-20 03:37:25,216 | INFO     | mean x: 1745103657.0037453
[2025-04-19 23:37:39] 2025-04-20 03:37:25,216 | INFO     | mean y: 2505705.009363296
[2025-04-19 23:37:39] 2025-04-20 03:37:25,216 | INFO     | -- intersect: -22462127750.754333
[2025-04-19 23:37:39] 2025-04-20 03:37:25,216 | INFO     | intersect: -22462127750.754333
[2025-04-19 23:37:39] 2025-04-20 03:37:25,217 | INFO     | chi2: 6.956341899003558
[2025-04-19 23:37:39] 2025-04-20 03:37:25,217 | INFO     | current chi2=6.956341899003558 (change=10.53890799244679 %)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,217 | INFO     | right removable region: 533
[2025-04-19 23:37:39] 2025-04-20 03:37:25,218 | INFO     | sum of square deviations: 47217370441.99254
[2025-04-19 23:37:39] 2025-04-20 03:37:25,227 | INFO     | sum of deviations: 413823072261.3666
[2025-04-19 23:37:39] 2025-04-20 03:37:25,227 | INFO     | mean x: 1745103962.0037453
[2025-04-19 23:37:39] 2025-04-20 03:37:25,227 | INFO     | mean y: 2520566.3164794007
[2025-04-19 23:37:39] 2025-04-20 03:37:25,227 | INFO     | -- intersect: -15291941539.72278
[2025-04-19 23:37:39] 2025-04-20 03:37:25,228 | INFO     | intersect: -15291941539.72278
[2025-04-19 23:37:39] 2025-04-20 03:37:25,229 | INFO     | chi2: 4.4737822038232045
[2025-04-19 23:37:39] 2025-04-20 03:37:25,229 | INFO     | current chi2=4.4737822038232045 (change=42.46553042263324 %)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,230 | INFO     | sum of square deviations: 45903338178.2118
[2025-04-19 23:37:39] 2025-04-20 03:37:25,237 | INFO     | sum of deviations: 293391497178.01337
[2025-04-19 23:37:39] 2025-04-20 03:37:25,238 | INFO     | mean x: 1745104114.5085065
[2025-04-19 23:37:39] 2025-04-20 03:37:25,238 | INFO     | mean y: 2534540.2192816637
[2025-04-19 23:37:39] 2025-04-20 03:37:25,238 | INFO     | -- intersect: -11151310238.986431
[2025-04-19 23:37:39] 2025-04-20 03:37:25,238 | INFO     | intersect: -11151310238.986431
[2025-04-19 23:37:39] 2025-04-20 03:37:25,239 | INFO     | chi2: 2.786351028433549
[2025-04-19 23:37:39] 2025-04-20 03:37:25,239 | INFO     | current chi2=2.786351028433549 (change=37.71822360837348 %)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,240 | INFO     | sum of square deviations: 44613911026.90654
[2025-04-19 23:37:39] 2025-04-20 03:37:25,248 | INFO     | sum of deviations: 179339081182.13367
[2025-04-19 23:37:39] 2025-04-20 03:37:25,248 | INFO     | mean x: 1745104267.0133588
[2025-04-19 23:37:39] 2025-04-20 03:37:25,248 | INFO     | mean y: 2548029.9809160307
[2025-04-19 23:37:39] 2025-04-20 03:37:25,248 | INFO     | -- intersect: -7012425295.815334
[2025-04-19 23:37:39] 2025-04-20 03:37:25,248 | INFO     | intersect: -7012425295.815334
[2025-04-19 23:37:39] 2025-04-20 03:37:25,249 | INFO     | chi2: 1.2853813671908123
[2025-04-19 23:37:39] 2025-04-20 03:37:25,249 | INFO     | current chi2=1.2853813671908123 (change=53.86864920916166 %)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,250 | INFO     | sum of square deviations: 43348856425.57594
[2025-04-19 23:37:39] 2025-04-20 03:37:25,257 | INFO     | sum of deviations: 137469969826.76486
[2025-04-19 23:37:39] 2025-04-20 03:37:25,258 | INFO     | mean x: 1745104419.5183043
[2025-04-19 23:37:39] 2025-04-20 03:37:25,258 | INFO     | mean y: 2553069.5510597304
[2025-04-19 23:37:39] 2025-04-20 03:37:25,258 | INFO     | -- intersect: -5531605652.8966675
[2025-04-19 23:37:39] 2025-04-20 03:37:25,258 | INFO     | intersect: -5531605652.8966675
[2025-04-19 23:37:39] 2025-04-20 03:37:25,259 | INFO     | chi2: 1.0925237736209676
[2025-04-19 23:37:39] 2025-04-20 03:37:25,259 | INFO     | current chi2=1.0925237736209676 (change=15.003920119935529 %)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,259 | INFO     | left removable region: 40
[2025-04-19 23:37:39] 2025-04-20 03:37:25,260 | INFO     | sum of square deviations: 37154812594.62877
[2025-04-19 23:37:39] 2025-04-20 03:37:25,267 | INFO     | sum of deviations: 76323972192.22514
[2025-04-19 23:37:39] 2025-04-20 03:37:25,267 | INFO     | mean x: 1745104846.535497
[2025-04-19 23:37:39] 2025-04-20 03:37:25,267 | INFO     | mean y: 2569586.101419878
[2025-04-19 23:37:39] 2025-04-20 03:37:25,267 | INFO     | -- intersect: -3582250911.6541657
[2025-04-19 23:37:39] 2025-04-20 03:37:25,267 | INFO     | intersect: -3582250911.6541657
[2025-04-19 23:37:39] 2025-04-20 03:37:25,269 | INFO     | chi2: 0.019534750608638428
[2025-04-19 23:37:39] 2025-04-20 03:37:25,269 | INFO     | -- intersect: -3582250911.6541657
[2025-04-19 23:37:39] 2025-04-20 03:37:25,269 | INFO     | current memory leak: 2.05 B/s (using 493 data points, chi2=0.02)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,270 | INFO     | ..............................
[2025-04-19 23:37:39] 2025-04-20 03:37:25,270 | INFO     | . Timing measurements:
[2025-04-19 23:37:39] 2025-04-20 03:37:25,270 | INFO     | . get job = 0 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,270 | INFO     | . initial setup = 4 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | . payload setup = 28 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | . stage-in = 0 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | . payload execution = 32865 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | . stage-out = 2 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | . log creation = 0 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,271 | INFO     | ..............................
[2025-04-19 23:37:39] 2025-04-20 03:37:25,423 | INFO     | 
[2025-04-19 23:37:39] 2025-04-20 03:37:25,423 | INFO     | job summary report
[2025-04-19 23:37:39] 2025-04-20 03:37:25,423 | INFO     | --------------------------------------------------
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | PanDA job id: 6607578018
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | task id: 44075483
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | errors: (none)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | pilot state: finished 
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | transexitcode: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:25,424 | INFO     | exeerrorcode: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | exeerrordiag: 
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | exitcode: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | exitmsg: OK
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | cpuconsumptiontime: 80472 s
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | nevents: 400
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | neventsw: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | pid: 11750
[2025-04-19 23:37:39] 2025-04-20 03:37:25,425 | INFO     | pgrp: 11750
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | corecount: 10
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | event service: False
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | sizes: {0: 2426602, 1: 2426602, 2: 2426829, 13: 2426829, 21: 2427091, 24: 2427119, 32897: 2465553, 32898: 2465552, 32900: 2474549, 32902: 2474605, 32909: 2474775}
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | --------------------------------------------------
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | 
[2025-04-19 23:37:39] 2025-04-20 03:37:25,426 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-19 23:37:39] 2025-04-20 03:37:25,446 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,449 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 23:37:39] 2025-04-20 03:37:25,450 | INFO     | job 6607578018 has completed (purged errors)
[2025-04-19 23:37:39] 2025-04-20 03:37:25,450 | INFO     | overall cleanup function is called
[2025-04-19 23:37:39] 2025-04-20 03:37:26,458 | INFO     | --- collectZombieJob: --- 10, [11750]
[2025-04-19 23:37:39] 2025-04-20 03:37:26,458 | INFO     | zombie collector waiting for pid 11750
[2025-04-19 23:37:39] 2025-04-20 03:37:26,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 23:37:39] 2025-04-20 03:37:26,458 | INFO     | collected zombie processes
[2025-04-19 23:37:39] 2025-04-20 03:37:26,458 | INFO     | will attempt to kill all subprocesses of pid=11750
[2025-04-19 23:37:39] 2025-04-20 03:37:26,668 | INFO     | process IDs to be killed: [11750] (in reverse order)
[2025-04-19 23:37:39] 2025-04-20 03:37:26,757 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 23:37:39] 2025-04-20 03:37:26,757 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 23:37:39] 2025-04-20 03:37:26,761 | INFO     | did not find any defunct processes belonging to 11750
[2025-04-19 23:37:39] 2025-04-20 03:37:26,765 | INFO     | did not find any defunct processes belonging to 11750
[2025-04-19 23:37:39] 2025-04-20 03:37:26,766 | INFO     | ready for new job
[2025-04-19 23:37:39] 2025-04-20 03:37:26,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 23:37:39] 2025-04-20 03:37:26,768 | INFO     | **************************************
[2025-04-19 23:37:39] 2025-04-20 03:37:26,768 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 23:37:39] 2025-04-20 03:37:26,768 | INFO     | **************************************
[2025-04-19 23:37:39] 2025-04-20 03:37:26,768 | INFO     | 
[2025-04-19 23:37:39] 2025-04-20 03:37:26,770 | INFO     | architecture information:
[2025-04-19 23:37:39] 2025-04-20 03:37:26,770 | INFO     | executing command: cat /etc/os-release
[2025-04-19 23:37:39] 2025-04-20 03:37:26,784 | INFO     | cat /etc/os-release:
[2025-04-19 23:37:39] NAME="CentOS Linux"
[2025-04-19 23:37:39] VERSION="7 (Core)"
[2025-04-19 23:37:39] ID="centos"
[2025-04-19 23:37:39] ID_LIKE="rhel fedora"
[2025-04-19 23:37:39] VERSION_ID="7"
[2025-04-19 23:37:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 23:37:39] ANSI_COLOR="0;31"
[2025-04-19 23:37:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 23:37:39] HOME_URL="https://www.centos.org/"
[2025-04-19 23:37:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 23:37:39] 
[2025-04-19 23:37:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 23:37:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 23:37:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 23:37:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 23:37:39] 
[2025-04-19 23:37:39] 2025-04-20 03:37:26,784 | INFO     | **************************************
[2025-04-19 23:37:39] 2025-04-20 03:37:27,288 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-19 23:37:39] 2025-04-20 03:37:27,516 | INFO     | sufficient remaining disk space (56721670144 B)
[2025-04-19 23:37:39] 2025-04-20 03:37:27,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 23:37:39] 2025-04-20 03:37:27,517 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 23:37:39] 2025-04-20 03:37:27,517 | INFO     | update_server=False
[2025-04-19 23:37:39] 2025-04-20 03:37:27,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 23:37:39] 2025-04-20 03:37:27,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 23:37:39] 2025-04-20 03:37:27,537 | INFO     | aborting loop
[2025-04-19 23:37:39] 2025-04-20 03:37:27,541 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 23:37:39] 2025-04-20 03:37:27,541 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 23:37:39] 2025-04-20 03:37:27,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 23:37:39] 2025-04-20 03:37:27,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 23:37:39] 2025-04-20 03:37:27,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 23:37:39] 2025-04-20 03:37:27,585 | INFO     | all data control threads have been joined
[2025-04-19 23:37:39] 2025-04-20 03:37:27,598 | INFO     | all job control threads have been joined
[2025-04-19 23:37:39] 2025-04-20 03:37:27,923 | INFO     | all payload control threads have been joined
[2025-04-19 23:37:39] 2025-04-20 03:37:28,530 | INFO     | [job] retrieve thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,543 | INFO     | [job] job monitor thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,591 | INFO     | [data] control thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,604 | INFO     | [job] control thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,838 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,840 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:28,928 | INFO     | [payload] control thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 23:37:39] 2025-04-20 03:37:29,328 | INFO     | [payload] failed_post thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,511 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,516 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,559 | INFO     | [data] copytool_out thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,701 | INFO     | [job] validate thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:29,963 | INFO     | [data] copytool_in thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:30,030 | INFO     | [payload] validate_post thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:30,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 23:37:39] 2025-04-20 03:37:31,443 | INFO     | [job] queue monitor thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:33,289 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 23:37:39] 2025-04-20 03:37:34,105 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514295871296)>', '<ExcThread(monitor, started 140513848047360)>']
[2025-04-19 23:37:39] 2025-04-20 03:37:34,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 23:37:39] 2025-04-20 03:37:34,587 | INFO     | [monitor] control thread has ended
[2025-04-19 23:37:39] 2025-04-20 03:37:39,130 | INFO     | all workflow threads have been joined
[2025-04-19 23:37:39] 2025-04-20 03:37:39,130 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 23:37:39] 2025-04-20 03:37:39,130 | INFO     | traces error code: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:39,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 23:37:39] 2025-04-20 03:37:39,249 [wrapper] ==== pilot stdout END ====
[2025-04-19 23:37:39] 2025-04-20 03:37:39,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 23:37:39] 2025-04-20 03:37:39,254 [wrapper] pilotpid: 46833
[2025-04-19 23:37:39] 2025-04-20 03:37:39,257 [wrapper] Pilot exit status: 0
[2025-04-19 23:37:39] 2025-04-20 03:37:39,269 [wrapper] pandaids: 6607578018 6607578018
[2025-04-19 23:37:39] 2025-04-20 03:37:39,332 [wrapper] cleanup supervisor_pilot 33652 46834
[2025-04-19 23:37:39] 2025-04-20 03:37:39,360 [wrapper] Test setup, not cleaning
[2025-04-19 23:37:39] 2025-04-20 03:37:39,363 [wrapper] apfmon messages muted
[2025-04-19 23:37:39] 2025-04-20 03:37:39,366 [wrapper] ==== wrapper stdout END ====
[2025-04-19 23:37:39] 2025-04-20 03:37:39,369 [wrapper] ==== wrapper stderr END ====
[2025-04-19 23:37:39]  *** Error codes and diagnostics ***
[2025-04-19 23:37:39]     "exeErrorCode": 0,
[2025-04-19 23:37:39]     "exeErrorDiag": "",
[2025-04-19 23:37:39]     "pilotErrorCode": 0,
[2025-04-19 23:37:39]     "pilotErrorDiag": "",
[2025-04-19 23:37:39]  *** Listing of results directory ***
[2025-04-19 23:37:39] total 636796
[2025-04-19 23:37:39] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 03:37 pilot3.tar.gz
[2025-04-19 23:37:39] -rwx------ 1 boincer umatlas     37140 Apr 19 03:40 runpilot2-wrapper.sh
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 03:40 queuedata.json
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas       100 Apr 19 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 23:37:39] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 06:39 run_atlas
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas       105 Apr 19 06:39 job.xml
[2025-04-19 23:37:39] -rw-r--r-- 3 boincer umatlas 223942580 Apr 19 06:39 EVNT.44075481._003090.pool.root.1
[2025-04-19 23:37:39] -rw-r--r-- 3 boincer umatlas 223942580 Apr 19 06:39 ATLAS.root_0
[2025-04-19 23:37:39] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 06:39 start_atlas.sh
[2025-04-19 23:37:39] drwxrwx--x 2 boincer umatlas      4096 Apr 19 06:39 shared
[2025-04-19 23:37:39] -rw-r--r-- 2 boincer umatlas    508888 Apr 19 06:39 input.tar.gz
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas         0 Apr 19 06:39 boinc_lockfile
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas      2578 Apr 19 14:27 pandaJob.out
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas       467 Apr 19 14:27 setup.sh.local
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas    991268 Apr 19 14:28 agis_schedconf.cvmfs.json
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas        96 Apr 19 23:36 pilot_heartbeat.json
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas 193870987 Apr 19 23:36 HITS.44075483._079688.pool.root.1
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas       532 Apr 19 23:36 boinc_task_state.xml
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas      1057 Apr 19 23:37 memory_monitor_summary.json
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas   1618536 Apr 19 23:37 agis_ddmendpoints.agis.ALL.json
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas    584959 Apr 19 23:37 log.44075483._079688.job.log.tgz.1
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas      6037 Apr 19 23:37 init_data.xml
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas      7748 Apr 19 23:37 heartbeat.json
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 23:37 boinc_mmap_file
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas        29 Apr 19 23:37 wrapper_checkpoint.txt
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas      4476 Apr 19 23:37 pilotlog.txt
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas   2645031 Apr 19 23:37 log.44075483._079688.job.log.1
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas       357 Apr 19 23:37 output.list
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas       620 Apr 19 23:37 runtime_log
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas   3246080 Apr 19 23:37 result.tar.gz
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas       787 Apr 19 23:37 SzaMDm0zHQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmqMhLDmznCdkn.diag
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas     11506 Apr 19 23:37 runtime_log.err
[2025-04-19 23:37:39] -rw-r--r-- 1 boincer umatlas     23035 Apr 19 23:37 stderr.txt
[2025-04-19 23:37:39] HITS file was successfully produced:
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas 193870987 Apr 19 23:36 shared/HITS.pool.root.1
[2025-04-19 23:37:39]  *** Contents of shared directory: ***
[2025-04-19 23:37:39] total 411720
[2025-04-19 23:37:39] -rw-r--r-- 3 boincer umatlas 223942580 Apr 19 06:39 ATLAS.root_0
[2025-04-19 23:37:39] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 06:39 start_atlas.sh
[2025-04-19 23:37:39] -rw-r--r-- 2 boincer umatlas    508888 Apr 19 06:39 input.tar.gz
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas 193870987 Apr 19 23:36 HITS.pool.root.1
[2025-04-19 23:37:39] -rw------- 1 boincer umatlas   3246080 Apr 19 23:37 result.tar.gz
23:37:41 (37505): run_atlas exited; CPU time 81209.566638
23:37:41 (37505): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN