Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:09:16 (11194): wrapper (7.7.26015): starting
06:09:16 (11194): wrapper: running run_atlas (--nthreads 8)
[2025-04-19 06:09:16] Arguments: --nthreads 8
[2025-04-19 06:09:16] Threads: 8
[2025-04-19 06:09:16] Checking for CVMFS
[2025-04-19 06:09:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 06:09:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 06:09:17] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 06:09:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 06:09:17] 2.11.2.0 2856 133346 125524 145034 0 55 13824802 20275200 1 130560 0 20362429 99.975 8788955 44689 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 06:09:17] CVMFS is ok
[2025-04-19 06:09:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 06:09:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 06:09:17] Further information can be found at the LHC@home message board.
[2025-04-19 06:09:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 06:09:17] Checking for apptainer binary...
[2025-04-19 06:09:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 06:09:17] Running /usr/bin/apptainer --version
[2025-04-19 06:09:17] apptainer version 1.3.2-1.el7
[2025-04-19 06:09:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 06:09:19] c-204-27.aglt2.org
[2025-04-19 06:09:19] apptainer works
[2025-04-19 06:09:19] Set ATHENA_PROC_NUMBER=8
[2025-04-19 06:09:19] Set ATHENA_CORE_NUMBER=8
[2025-04-19 06:09:19] Starting ATLAS job with PandaID=6607529937
[2025-04-19 06:09:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:27:44 (28425): wrapper (7.7.26015): starting
07:27:44 (28425): wrapper: running run_atlas (--nthreads 8)
[2025-04-19 07:27:44] Arguments: --nthreads 8
[2025-04-19 07:27:44] Threads: 8
[2025-04-19 07:27:44] This job has been restarted, cleaning up previous attempt
[2025-04-19 07:27:44] Checking for CVMFS
[2025-04-19 07:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 07:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 07:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 07:27:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 07:27:44] 2.11.2.0 2856 133425 123628 145037 2 8 13859729 20275200 1 130560 0 20432322 99.975 8792493 44686 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 07:27:44] CVMFS is ok
[2025-04-19 07:27:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 07:27:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 07:27:44] Further information can be found at the LHC@home message board.
[2025-04-19 07:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 07:27:44] Checking for apptainer binary...
[2025-04-19 07:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 07:27:44] Running /usr/bin/apptainer --version
[2025-04-19 07:27:44] apptainer version 1.3.2-1.el7
[2025-04-19 07:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 07:27:46] c-204-27.aglt2.org
[2025-04-19 07:27:46] apptainer works
[2025-04-19 07:27:46] Set ATHENA_PROC_NUMBER=8
[2025-04-19 07:27:46] Set ATHENA_CORE_NUMBER=8
[2025-04-19 07:27:46] Starting ATLAS job with PandaID=6607529937
[2025-04-19 07:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 09:35:35]  *** The last 200 lines of the pilot log: ***
[2025-04-19 09:35:35] 2025-04-19 13:35:08,744 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 09:35:35] 2025-04-19 13:35:10,379 | INFO     | monitor loop #562: job 0:6607529937 is in state 'finished'
[2025-04-19 09:35:35] 2025-04-19 13:35:10,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 09:35:35] 2025-04-19 13:35:12,882 | INFO     | monitor loop #563: job 0:6607529937 is in state 'finished'
[2025-04-19 09:35:35] 2025-04-19 13:35:12,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 09:35:35] 2025-04-19 13:35:13,618 | INFO     | PID=32138 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,346 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 09:35:35] 2025-04-19 13:35:14,347 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607529937/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,348 | INFO     | extracted standard info from prmon json
[2025-04-19 09:35:35] 2025-04-19 13:35:14,348 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 09:35:35] 2025-04-19 13:35:14,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 09:35:35] 2025-04-19 13:35:14,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 09:35:35] 2025-04-19 13:35:14,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 09:35:35] 2025-04-19 13:35:14,352 | INFO     | fitting pss+swap vs Time
[2025-04-19 09:35:35] 2025-04-19 13:35:14,352 | INFO     | sum of square deviations: 605592750.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | sum of deviations: -365003382.0000038
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | mean x: 1745065895.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | mean y: 2496332.968
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | -- intersect: 1054283946.8188323
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | intersect: 1054283946.8188323
[2025-04-19 09:35:35] 2025-04-19 13:35:14,353 | INFO     | chi2: 3.1925955604278315
[2025-04-19 09:35:35] 2025-04-19 13:35:14,354 | INFO     | sum of square deviations: 535786790.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,354 | INFO     | sum of deviations: 8242813154.499996
[2025-04-19 09:35:35] 2025-04-19 13:35:14,354 | INFO     | mean x: 1745065742.5
[2025-04-19 09:35:35] 2025-04-19 13:35:14,354 | INFO     | mean y: 2514556.675
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | -- intersect: -26844453539.99327
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | intersect: -26844453539.99327
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | chi2: 2.444324576748661
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | current chi2=2.444324576748661 (change=23.437700438914863 %)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | right removable region: 119
[2025-04-19 09:35:35] 2025-04-19 13:35:14,355 | INFO     | sum of square deviations: 535786790.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,356 | INFO     | sum of deviations: -28066293187.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,356 | INFO     | mean x: 1745066047.5
[2025-04-19 09:35:35] 2025-04-19 13:35:14,356 | INFO     | mean y: 2556399.2666666666
[2025-04-19 09:35:35] 2025-04-19 13:35:14,356 | INFO     | -- intersect: 91414917125.46947
[2025-04-19 09:35:35] 2025-04-19 13:35:14,357 | INFO     | intersect: 91414917125.46947
[2025-04-19 09:35:35] 2025-04-19 13:35:14,357 | INFO     | chi2: 1.0136248860409385
[2025-04-19 09:35:35] 2025-04-19 13:35:14,357 | INFO     | current chi2=1.0136248860409385 (change=68.25075814159483 %)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,357 | INFO     | sum of square deviations: 471562330.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | sum of deviations: -30477272253.999996
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | mean x: 1745066200.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | mean y: 2561883.460869565
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | -- intersect: 112786926314.46452
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | intersect: 112786926314.46452
[2025-04-19 09:35:35] 2025-04-19 13:35:14,358 | INFO     | chi2: 0.9145381881152266
[2025-04-19 09:35:35] 2025-04-19 13:35:14,359 | INFO     | current chi2=0.9145381881152266 (change=9.775479991688954 %)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,359 | INFO     | left removable region: 20
[2025-04-19 09:35:35] 2025-04-19 13:35:14,359 | INFO     | sum of square deviations: 300842850.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,359 | INFO     | sum of deviations: -15476099062.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | mean x: 1745066322.0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | mean y: 2568306.767676768
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | -- intersect: 89773088925.86163
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | intersect: 89773088925.86163
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | chi2: 0.1053384597591607
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | -- intersect: 89773088925.86163
[2025-04-19 09:35:35] 2025-04-19 13:35:14,360 | INFO     | current memory leak: -51.44 B/s (using 99 data points, chi2=0.11)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | ..............................
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | . Timing measurements:
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | . get job = 0 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | . initial setup = 1 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | . payload setup = 9 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,361 | INFO     | . stage-in = 0 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,362 | INFO     | . payload execution = 7590 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,362 | INFO     | . stage-out = 2 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,362 | INFO     | . log creation = 0 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,362 | INFO     | ..............................
[2025-04-19 09:35:35] 2025-04-19 13:35:14,458 | INFO     | 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,458 | INFO     | job summary report
[2025-04-19 09:35:35] 2025-04-19 13:35:14,458 | INFO     | --------------------------------------------------
[2025-04-19 09:35:35] 2025-04-19 13:35:14,458 | INFO     | PanDA job id: 6607529937
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | task id: 44075483
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | errors: (none)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | pilot state: finished 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | transexitcode: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | exeerrorcode: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | exeerrordiag: 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | exitcode: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,459 | INFO     | exitmsg: OK
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | cpuconsumptiontime: 55923 s
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | nevents: 400
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | neventsw: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | pid: 6327
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | pgrp: 6327
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | corecount: 8
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | event service: False
[2025-04-19 09:35:35] 2025-04-19 13:35:14,460 | INFO     | sizes: {0: 2426602, 1: 2426801, 7: 2427007, 12: 2427035, 7604: 2454405, 7608: 2463530, 7617: 2463644}
[2025-04-19 09:35:35] 2025-04-19 13:35:14,461 | INFO     | --------------------------------------------------
[2025-04-19 09:35:35] 2025-04-19 13:35:14,461 | INFO     | 
[2025-04-19 09:35:35] 2025-04-19 13:35:14,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 09:35:35] 2025-04-19 13:35:14,489 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,492 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 09:35:35] 2025-04-19 13:35:14,493 | INFO     | job 6607529937 has completed (purged errors)
[2025-04-19 09:35:35] 2025-04-19 13:35:14,493 | INFO     | overall cleanup function is called
[2025-04-19 09:35:35] 2025-04-19 13:35:15,501 | INFO     | --- collectZombieJob: --- 10, [6327]
[2025-04-19 09:35:35] 2025-04-19 13:35:15,501 | INFO     | zombie collector waiting for pid 6327
[2025-04-19 09:35:35] 2025-04-19 13:35:15,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 09:35:35] 2025-04-19 13:35:15,502 | INFO     | collected zombie processes
[2025-04-19 09:35:35] 2025-04-19 13:35:15,502 | INFO     | will attempt to kill all subprocesses of pid=6327
[2025-04-19 09:35:35] 2025-04-19 13:35:15,593 | INFO     | process IDs to be killed: [6327] (in reverse order)
[2025-04-19 09:35:35] 2025-04-19 13:35:15,653 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 09:35:35] 2025-04-19 13:35:15,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 09:35:35] 2025-04-19 13:35:15,658 | INFO     | did not find any defunct processes belonging to 6327
[2025-04-19 09:35:35] 2025-04-19 13:35:15,661 | INFO     | did not find any defunct processes belonging to 6327
[2025-04-19 09:35:35] 2025-04-19 13:35:15,661 | INFO     | ready for new job
[2025-04-19 09:35:35] 2025-04-19 13:35:15,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 09:35:35] 2025-04-19 13:35:15,663 | INFO     | **************************************
[2025-04-19 09:35:35] 2025-04-19 13:35:15,663 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 09:35:35] 2025-04-19 13:35:15,663 | INFO     | **************************************
[2025-04-19 09:35:35] 2025-04-19 13:35:15,663 | INFO     | 
[2025-04-19 09:35:35] 2025-04-19 13:35:15,664 | INFO     | architecture information:
[2025-04-19 09:35:35] 2025-04-19 13:35:15,664 | INFO     | executing command: cat /etc/os-release
[2025-04-19 09:35:35] 2025-04-19 13:35:15,682 | INFO     | cat /etc/os-release:
[2025-04-19 09:35:35] NAME="CentOS Linux"
[2025-04-19 09:35:35] VERSION="7 (Core)"
[2025-04-19 09:35:35] ID="centos"
[2025-04-19 09:35:35] ID_LIKE="rhel fedora"
[2025-04-19 09:35:35] VERSION_ID="7"
[2025-04-19 09:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 09:35:35] ANSI_COLOR="0;31"
[2025-04-19 09:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 09:35:35] HOME_URL="https://www.centos.org/"
[2025-04-19 09:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 09:35:35] 
[2025-04-19 09:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 09:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 09:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 09:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 09:35:35] 
[2025-04-19 09:35:35] 2025-04-19 13:35:15,683 | INFO     | **************************************
[2025-04-19 09:35:35] 2025-04-19 13:35:16,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 09:35:35] 2025-04-19 13:35:16,206 | INFO     | sufficient remaining disk space (18592301056 B)
[2025-04-19 09:35:35] 2025-04-19 13:35:16,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 09:35:35] 2025-04-19 13:35:16,207 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 09:35:35] 2025-04-19 13:35:16,207 | INFO     | update_server=False
[2025-04-19 09:35:35] 2025-04-19 13:35:16,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 09:35:35] 2025-04-19 13:35:16,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 09:35:35] 2025-04-19 13:35:16,208 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 09:35:35] 2025-04-19 13:35:16,208 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 09:35:35] 2025-04-19 13:35:16,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 09:35:35] 2025-04-19 13:35:16,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 09:35:35] 2025-04-19 13:35:16,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 09:35:35] 2025-04-19 13:35:16,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 09:35:35] 2025-04-19 13:35:16,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 09:35:35] 2025-04-19 13:35:16,392 | INFO     | aborting loop
[2025-04-19 09:35:35] 2025-04-19 13:35:16,691 | INFO     | all data control threads have been joined
[2025-04-19 09:35:35] 2025-04-19 13:35:17,184 | INFO     | all job control threads have been joined
[2025-04-19 09:35:35] 2025-04-19 13:35:17,213 | INFO     | [job] retrieve thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:17,213 | INFO     | [job] queue monitor thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:17,394 | INFO     | [job] job monitor thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:17,457 | INFO     | all payload control threads have been joined
[2025-04-19 09:35:35] 2025-04-19 13:35:17,465 | INFO     | [payload] validate_post thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:17,524 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:17,697 | INFO     | [data] control thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,189 | INFO     | [job] control thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,264 | INFO     | [data] copytool_out thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,463 | INFO     | [payload] control thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,485 | INFO     | [payload] failed_post thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,511 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,533 | INFO     | [job] validate thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,534 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:18,536 | INFO     | [data] copytool_in thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:20,391 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:27,056 | INFO     | job.realtimelogging is not enabled
[2025-04-19 09:35:35] 2025-04-19 13:35:28,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 09:35:35] 2025-04-19 13:35:30,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140385275270976)>', '<ExcThread(monitor, started 140384621553408)>']
[2025-04-19 09:35:35] 2025-04-19 13:35:30,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 09:35:35] 2025-04-19 13:35:30,265 | INFO     | [monitor] control thread has ended
[2025-04-19 09:35:35] 2025-04-19 13:35:35,149 | INFO     | all workflow threads have been joined
[2025-04-19 09:35:35] 2025-04-19 13:35:35,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 09:35:35] 2025-04-19 13:35:35,150 | INFO     | traces error code: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:35,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 09:35:35] 2025-04-19 13:35:35,271 [wrapper] ==== pilot stdout END ====
[2025-04-19 09:35:35] 2025-04-19 13:35:35,276 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 09:35:35] 2025-04-19 13:35:35,281 [wrapper] pilotpid: 32138
[2025-04-19 09:35:35] 2025-04-19 13:35:35,286 [wrapper] Pilot exit status: 0
[2025-04-19 09:35:35] 2025-04-19 13:35:35,306 [wrapper] pandaids: 6607529937 6607529937
[2025-04-19 09:35:35] 2025-04-19 13:35:35,351 [wrapper] cleanup supervisor_pilot 27857 32139
[2025-04-19 09:35:35] 2025-04-19 13:35:35,356 [wrapper] Test setup, not cleaning
[2025-04-19 09:35:35] 2025-04-19 13:35:35,361 [wrapper] apfmon messages muted
[2025-04-19 09:35:35] 2025-04-19 13:35:35,366 [wrapper] ==== wrapper stdout END ====
[2025-04-19 09:35:35] 2025-04-19 13:35:35,370 [wrapper] ==== wrapper stderr END ====
[2025-04-19 09:35:35]  *** Error codes and diagnostics ***
[2025-04-19 09:35:35]     "exeErrorCode": 0,
[2025-04-19 09:35:35]     "exeErrorDiag": "",
[2025-04-19 09:35:35]     "pilotErrorCode": 0,
[2025-04-19 09:35:35]     "pilotErrorDiag": "",
[2025-04-19 09:35:35]  *** Listing of results directory ***
[2025-04-19 09:35:35] total 629820
[2025-04-19 09:35:35] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 03:04 pilot3.tar.gz
[2025-04-19 09:35:35] -rwx------ 1 boincer umatlas     37140 Apr 19 03:20 runpilot2-wrapper.sh
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 03:20 queuedata.json
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas       100 Apr 19 06:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 09:35:35] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 06:09 run_atlas
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas       105 Apr 19 06:09 job.xml
[2025-04-19 09:35:35] -rw-r--r-- 3 boincer umatlas 222320940 Apr 19 06:09 EVNT.44075481._003082.pool.root.1
[2025-04-19 09:35:35] -rw-r--r-- 3 boincer umatlas 222320940 Apr 19 06:09 ATLAS.root_0
[2025-04-19 09:35:35] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 06:09 start_atlas.sh
[2025-04-19 09:35:35] drwxrwx--x 2 boincer umatlas      4096 Apr 19 06:09 shared
[2025-04-19 09:35:35] -rw-r--r-- 2 boincer umatlas    508882 Apr 19 06:09 input.tar.gz
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas         0 Apr 19 06:09 boinc_lockfile
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas      2578 Apr 19 07:27 pandaJob.out
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas       462 Apr 19 07:27 setup.sh.local
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas    991292 Apr 19 07:27 agis_schedconf.cvmfs.json
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas      5906 Apr 19 09:29 init_data.xml
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas 194372527 Apr 19 09:34 HITS.44075483._079456.pool.root.1
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas        96 Apr 19 09:34 pilot_heartbeat.json
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas      1048 Apr 19 09:34 memory_monitor_summary.json
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas       531 Apr 19 09:34 boinc_task_state.xml
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas   1618536 Apr 19 09:35 agis_ddmendpoints.agis.ALL.json
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas    328377 Apr 19 09:35 log.44075483._079456.job.log.tgz.1
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas      7748 Apr 19 09:35 heartbeat.json
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 09:35 boinc_mmap_file
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas        28 Apr 19 09:35 wrapper_checkpoint.txt
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas      4548 Apr 19 09:35 pilotlog.txt
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas    696980 Apr 19 09:35 log.44075483._079456.job.log.1
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas       357 Apr 19 09:35 output.list
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas       620 Apr 19 09:35 runtime_log
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas   1044480 Apr 19 09:35 result.tar.gz
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas     11473 Apr 19 09:35 runtime_log.err
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas       784 Apr 19 09:35 exyMDm7fHQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmRJhLDmu9zMan.diag
[2025-04-19 09:35:35] -rw-r--r-- 1 boincer umatlas     23345 Apr 19 09:35 stderr.txt
[2025-04-19 09:35:35] HITS file was successfully produced:
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas 194372527 Apr 19 09:34 shared/HITS.pool.root.1
[2025-04-19 09:35:35]  *** Contents of shared directory: ***
[2025-04-19 09:35:35] total 408476
[2025-04-19 09:35:35] -rw-r--r-- 3 boincer umatlas 222320940 Apr 19 06:09 ATLAS.root_0
[2025-04-19 09:35:35] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 06:09 start_atlas.sh
[2025-04-19 09:35:35] -rw-r--r-- 2 boincer umatlas    508882 Apr 19 06:09 input.tar.gz
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas 194372527 Apr 19 09:34 HITS.pool.root.1
[2025-04-19 09:35:35] -rw------- 1 boincer umatlas   1044480 Apr 19 09:35 result.tar.gz
09:35:37 (28425): run_atlas exited; CPU time 55857.166014
09:35:37 (28425): called boinc_finish(0)

</stderr_txt>
]]>

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