Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 12:36:19 (8704): Detected: vboxwrapper 26206
2025-04-19 12:36:19 (8704): Detected: BOINC client v7.22.2
2025-04-19 12:36:19 (8704): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-19 12:36:19 (8704): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 12:36:20 (8704): Create VM. (boinc_d094bbe852cd1d08, slot#14)
2025-04-19 12:36:20 (8704): Setting Memory Size for VM. (4800MB)
2025-04-19 12:36:21 (8704): Setting CPU Count for VM. (8)
2025-04-19 12:36:21 (8704): Setting Chipset Options for VM.
2025-04-19 12:36:21 (8704): Setting Graphics Controller Options for VM.
2025-04-19 12:36:21 (8704): Setting Boot Options for VM.
2025-04-19 12:36:22 (8704): Setting Network Configuration for NAT.
2025-04-19 12:36:22 (8704): Enabling VM Network Access.
2025-04-19 12:36:22 (8704): Disabling USB Support for VM.
2025-04-19 12:36:22 (8704): Disabling COM Port Support for VM.
2025-04-19 12:36:23 (8704): Disabling LPT Port Support for VM.
2025-04-19 12:36:23 (8704): Disabling Audio Support for VM.
2025-04-19 12:36:23 (8704): Disabling Clipboard Support for VM.
2025-04-19 12:36:23 (8704): Disabling Drag and Drop Support for VM.
2025-04-19 12:36:24 (8704): Adding storage controller(s) to VM.
2025-04-19 12:36:24 (8704): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 12:36:24 (8704): Adding VirtualBox Guest Additions to VM.
2025-04-19 12:36:25 (8704): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 12:36:25 (8704): forwarding host port 50106 to guest port 80
2025-04-19 12:36:25 (8704): Enabling remote desktop for VM.
2025-04-19 12:36:25 (8704): Required extension pack not installed, remote desktop not enabled.
2025-04-19 12:36:25 (8704): Enabling shared directory for VM.
2025-04-19 12:36:26 (8704): Starting VM using VBoxManage interface. (boinc_d094bbe852cd1d08, slot#14)
2025-04-19 12:36:30 (8704): Successfully started VM. (PID = '10288')
2025-04-19 12:36:30 (8704): Reporting VM Process ID to BOINC.
2025-04-19 12:36:30 (8704): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-19 12:36:30 (8704): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 12:36:30 (8704): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 12:36:30 (8704): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 12:36:30 (8704): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 12:36:30 (8704): Detected: Web Application Enabled (http://localhost:50106)
2025-04-19 12:36:30 (8704): Preference change detected
2025-04-19 12:36:30 (8704): Setting CPU throttle for VM. (100%)
2025-04-19 12:36:30 (8704): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 12:36:32 (8704): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 12:36:32 (8704): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 12:36:36 (8704): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 12:36:36 (8704): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 12:36:36 (8704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 12:36:43 (8704): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 12:36:43 (8704): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 12:36:50 (8704): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000128 main     Log opened 2025-04-19T12:36:48.505070000Z
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000226 main     OS Product: Linux
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000249 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000266 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000283 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000283 main     Process ID: 1366
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.000284 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 12:36:50 (8704): Guest Log: 00:00:00.001100 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 12:36:50 (8704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 12:36:50 (8704): Guest Log: [INFO] Mounting shared directory
2025-04-19 12:36:50 (8704): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 12:36:52 (8704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 12:36:52 (8704): Guest Log: [INFO] Detected branch: prod
2025-04-19 12:36:52 (8704): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 12:36:52 (8704): Guest Log: Copying input files
2025-04-19 12:36:53 (8704): Guest Log: Copied input files into RunAtlas.
2025-04-19 12:36:53 (8704): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 12:36:53 (8704): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 12:36:53 (8704): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 12:36:53 (8704): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 12:37:00 (8704): Guest Log: 00:00:10.005048 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 045 127 000ns (GuestNow=1 745 059 019 461 918 000 ns GuestLast=1 745 066 208 507 045 000 ns fSetTimeLastLoop=true )
2025-04-19 12:37:01 (8704): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 12:37:01 (8704): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 12:37:01 (8704): Guest Log: 2.6.3.0 1640 0 32208 145035 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 12:37:03 (8704): Guest Log: copied the webapp to /var/www
2025-04-19 12:37:03 (8704): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 12:37:03 (8704): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 12:37:04 (8704): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 12:37:04 (8704): Guest Log:  *** Starting ATLAS job. (PandaID=6607510335 taskID=44075483) ***
2025-04-19 13:18:17 (8704): Preference change detected
2025-04-19 13:18:17 (8704): Setting CPU throttle for VM. (100%)
2025-04-19 13:18:17 (8704): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 13:40:24 (8704): Preference change detected
2025-04-19 13:40:24 (8704): Setting CPU throttle for VM. (100%)
2025-04-19 13:40:24 (8704): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 14:16:40 (8704): Status Report: Elapsed Time: '6000.000000'
2025-04-19 14:16:40 (8704): Status Report: CPU Time: '40614.718750'
2025-04-19 14:20:34 (8704): Guest Log:  *** Job finished ***
2025-04-19 14:20:34 (8704): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:14,305 | INFO     | [data] queue_monitor thread has finished
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:20,326 | INFO     | job.realtimelogging is not enabled
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:21,328 | INFO     | [payload] run_realtimelog thread has finished
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:23,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178517743424)>', '<ExcThread(monitor, started 140177724925696)>']
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:23,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:23,973 | INFO     | [monitor] control thread has ended
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,306 | INFO     | all workflow threads have been joined
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,306 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,306 | INFO     | traces error code: 0
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,840 [wrapper] ==== pilot stdout END ====
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,845 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,849 [wrapper] pilotpid: 6000
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:28,854 [wrapper] Pilot exit status: 0
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,162 [wrapper] pandaids: 6607510335
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,190 [wrapper] cleanup supervisor_pilot  1114 6001
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,198 [wrapper] Test setup, not cleaning
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,203 [wrapper] apfmon messages muted
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,207 [wrapper] ==== wrapper stdout END ====
2025-04-19 14:20:34 (8704): Guest Log: 2025-04-19 12:20:29,211 [wrapper] ==== wrapper stderr END ====
2025-04-19 14:20:34 (8704): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 14:20:34 (8704): Guest Log:     "exeErrorCode": 0,
2025-04-19 14:20:34 (8704): Guest Log:     "exeErrorDiag": "",
2025-04-19 14:20:34 (8704): Guest Log:     "pilotErrorCode": 0,
2025-04-19 14:20:34 (8704): Guest Log:     "pilotErrorDiag": "",
2025-04-19 14:20:34 (8704): Guest Log:  *** Listing of results directory ***
2025-04-19 14:20:34 (8704): Guest Log: total 197072
2025-04-19 14:20:34 (8704): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 19 07:04 pilot3.tar.gz
2025-04-19 14:20:34 (8704): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 19 07:06 queuedata.json
2025-04-19 14:20:34 (8704): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 19 07:07 runpilot2-wrapper.sh
2025-04-19 14:20:34 (8704): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 10:36 start_atlas.sh
2025-04-19 14:20:34 (8704): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr 19 10:36 input.tar.gz
2025-04-19 14:20:34 (8704): Guest Log: -rwxr-xr-x. 1 atlas atlas      9453 Apr 19 10:36 init_data.xml
2025-04-19 14:20:34 (8704): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 10:36 EVNT.44075481._003076.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 14:20:34 (8704): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 19 10:37 pandaJob.out
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 10:37 setup.sh.local
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 10:37 agis_schedconf.cvmfs.json
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 10:37 agis_ddmendpoints.agis.ALL.json
2025-04-19 14:20:34 (8704): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 10:37 pilot3
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas 196261031 Apr 19 12:19 HITS.44075483._079304.pool.root.1
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 12:19 pilot_heartbeat.json
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 19 12:19 memory_monitor_summary.json
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas    323500 Apr 19 12:20 log.44075483._079304.job.log.tgz.1
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas      7710 Apr 19 12:20 heartbeat.json
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 19 12:20 pilotlog.txt
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas    547311 Apr 19 12:20 log.44075483._079304.job.log.1
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 12:20 output.list
2025-04-19 14:20:34 (8704): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 12:20 runtime_log
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas    890880 Apr 19 12:20 result.tar.gz
2025-04-19 14:20:34 (8704): Guest Log: -rw-------. 1 atlas atlas       657 Apr 19 12:20 WSVKDmNTHQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmlGhLDmaEtYNn.diag
2025-04-19 14:20:34 (8704): Guest Log: -rw-r--r--. 1 atlas atlas     10953 Apr 19 12:20 runtime_log.err
2025-04-19 14:20:35 (8704): Guest Log: Looking for outputfile HITS.44075483._079304.pool.root.1
2025-04-19 14:20:35 (8704): Guest Log: HITS file was successfully produced
2025-04-19 14:20:35 (8704): Guest Log: -rw-------. 1 atlas atlas 196261031 Apr 19 12:19 /home/atlas/RunAtlas/HITS.44075483._079304.pool.root.1
2025-04-19 14:20:37 (8704): Guest Log: Successfully finished the ATLAS job!
2025-04-19 14:20:37 (8704): Guest Log: Copying the results back to the shared directory!
2025-04-19 14:20:37 (8704): Guest Log:  *** Contents of shared directory: ***
2025-04-19 14:20:37 (8704): Guest Log: total 414800
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root 227053263 Apr 19 10:36 ATLAS.root_0
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root 196261031 Apr 19  2025 HITS.pool.root.1
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root      9453 Apr 19 10:36 init_data.xml
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 19 10:26 input.tar.gz
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root    890880 Apr 19  2025 result.tar.gz
2025-04-19 14:20:37 (8704): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 10:26 start_atlas.sh
2025-04-19 14:20:37 (8704): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 14:20:37 (8704): VM Completion File Detected.
2025-04-19 14:20:37 (8704): Powering off VM.
2025-04-19 14:20:37 (8704): Successfully stopped VM.
2025-04-19 14:20:37 (8704): Deregistering VM. (boinc_d094bbe852cd1d08, slot#14)
2025-04-19 14:20:37 (8704): Removing network bandwidth throttle group from VM.
2025-04-19 14:20:38 (8704): Removing VM from VirtualBox.
14:20:43 (8704): called boinc_finish(0)

</stderr_txt>
]]>

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