Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
13:16:27 (2922978): wrapper (7.7.26015): starting
13:16:27 (2922978): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 13:16:27] Arguments: --nthreads 12
[2025-04-19 13:16:27] Threads: 12
[2025-04-19 13:16:27] Checking for CVMFS
[2025-04-19 13:16:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 13:16:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 13:16:27] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 13:16:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 13:16:27] 2.11.5.0 4478 1200 208624 145037 2 185 2945059 4194304 10846 130560 0 16678900 99.999 529406 1965 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-04-19 13:16:27] CVMFS is ok
[2025-04-19 13:16:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 13:16:27] Checking for apptainer binary...
[2025-04-19 13:16:27] apptainer is not installed, using version from CVMFS
[2025-04-19 13:16:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 13:16:27] mikemint-desktop
[2025-04-19 13:16:27] apptainer works
[2025-04-19 13:16:28] Set ATHENA_PROC_NUMBER=12
[2025-04-19 13:16:28] Set ATHENA_CORE_NUMBER=12
[2025-04-19 13:16:28] Starting ATLAS job with PandaID=6600621086
[2025-04-19 13:16:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 14:52:30]  *** The last 200 lines of the pilot log: ***
[2025-04-19 14:52:30]  is_altstaged=None
[2025-04-19 14:52:30]  is_tar=False
[2025-04-19 14:52:30]  lfn=log.44075164._051230.job.log.tgz.1
[2025-04-19 14:52:30]  mtime=0
[2025-04-19 14:52:30]  protocol_id=None
[2025-04-19 14:52:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 14:52:30]  replicas=None
[2025-04-19 14:52:30]  scope=mc23_13p6TeV
[2025-04-19 14:52:30]  status=None
[2025-04-19 14:52:30]  status_code=0
[2025-04-19 14:52:30]  storage_token=
[2025-04-19 14:52:30]  surl=/var/lib/boinc-client/slots/14/PanDA_Pilot-6600621086/log.44075164._051230.job.log.tgz.1
[2025-04-19 14:52:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/3b/log.44075164._051230.job.log.tgz.1
[2025-04-19 14:52:30]  workdir=None
[2025-04-19 14:52:30] ]
[2025-04-19 14:52:30] 2025-04-19 12:52:06,163 | INFO     | transferring file log.44075164._051230.job.log.tgz.1 from /var/lib/boinc-client/slots/14/PanDA_Pilot-6600621086/log.44075164._051230.job.log.tgz.1 to /var/lib/boin
[2025-04-19 14:52:30] 2025-04-19 12:52:06,164 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/14/PanDA_Pilot-6600621086/log.44075164._051230.job.log.tgz.1 /var/lib/boinc-client/slots/14/log.4407
[2025-04-19 14:52:30] 2025-04-19 12:52:06,189 | INFO     | adding to output.list: log.44075164._051230.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/3b/log.44075164._051230.job.log.tg
[2025-04-19 14:52:30] 2025-04-19 12:52:06,190 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 14:52:30] 2025-04-19 12:52:06,190 | INFO     | summary of transferred files:
[2025-04-19 14:52:30] 2025-04-19 12:52:06,191 | INFO     |  -- lfn=log.44075164._051230.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 14:52:30] 2025-04-19 12:52:06,191 | INFO     | stage-out finished correctly
[2025-04-19 14:52:30] 2025-04-19 12:52:08,581 | INFO     | monitor loop #380: job 0:6600621086 is in state 'finished'
[2025-04-19 14:52:30] 2025-04-19 12:52:08,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 14:52:30] 2025-04-19 12:52:08,805 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 14:52:30] 2025-04-19 12:52:08,913 | INFO     | job 6600621086 has state=finished
[2025-04-19 14:52:30] 2025-04-19 12:52:08,913 | INFO     | preparing for final server update for job 6600621086 in state='finished'
[2025-04-19 14:52:30] 2025-04-19 12:52:08,913 | INFO     | this job has now completed (state=finished)
[2025-04-19 14:52:30] 2025-04-19 12:52:08,914 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 14:52:30] 2025-04-19 12:52:08,914 | INFO     | log transfer has been attempted: DONE
[2025-04-19 14:52:30] 2025-04-19 12:52:08,914 | INFO     | job 6600621086 has finished - writing final server update
[2025-04-19 14:52:30] 2025-04-19 12:52:08,914 | INFO     | total number of processed events: 400 (read)
[2025-04-19 14:52:30] 2025-04-19 12:52:08,945 | INFO     | executing command: lscpu
[2025-04-19 14:52:30] 2025-04-19 12:52:09,093 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 14:52:30] 2025-04-19 12:52:11,088 | INFO     | monitor loop #381: job 0:6600621086 is in state 'finished'
[2025-04-19 14:52:30] 2025-04-19 12:52:11,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 14:52:30] 2025-04-19 12:52:12,625 | INFO     | PID=2939564 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-19 14:52:30] 2025-04-19 12:52:12,625 | INFO     | .. there are 16 such processes running
[2025-04-19 14:52:30] 2025-04-19 12:52:13,593 | INFO     | monitor loop #382: job 0:6600621086 is in state 'finished'
[2025-04-19 14:52:30] 2025-04-19 12:52:13,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,706 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 14:52:30] 2025-04-19 12:52:14,706 | INFO     | using path: /var/lib/boinc-client/slots/14/PanDA_Pilot-6600621086/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,707 | INFO     | extracted standard info from prmon json
[2025-04-19 14:52:30] 2025-04-19 12:52:14,707 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 14:52:30] 2025-04-19 12:52:14,707 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 14:52:30] 2025-04-19 12:52:14,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 14:52:30] 2025-04-19 12:52:14,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 14:52:30] 2025-04-19 12:52:14,710 | INFO     | fitting pss+swap vs Time
[2025-04-19 14:52:30] 2025-04-19 12:52:14,710 | INFO     | sum of square deviations: 204163828.0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,710 | INFO     | sum of deviations: 6467791448.0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | mean x: 1745064358.0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | mean y: 2639179.103448276
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | -- intersect: -55279985766.986465
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | intersect: -55279985766.986465
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | chi2: 0.2253127763946496
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | -- intersect: -55279985766.986465
[2025-04-19 14:52:30] 2025-04-19 12:52:14,711 | INFO     | current memory leak: 31.68 B/s (using 87 data points, chi2=0.23)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | ..............................
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . Timing measurements:
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . get job = 0 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . initial setup = 1 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . payload setup = 7 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . stage-in = 0 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . payload execution = 5697 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . stage-out = 0 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | . log creation = 0 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,712 | INFO     | ..............................
[2025-04-19 14:52:30] 2025-04-19 12:52:14,814 | INFO     | 
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | job summary report
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | --------------------------------------------------
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | PanDA job id: 6600621086
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | task id: 44075164
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | errors: (none)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | pilot state: finished 
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | transexitcode: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | exeerrorcode: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | exeerrordiag: 
[2025-04-19 14:52:30] 2025-04-19 12:52:14,815 | INFO     | exitcode: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | exitmsg: OK
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | cpuconsumptiontime: 44976 s
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | nevents: 400
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | neventsw: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | pid: 2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | pgrp: 2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | corecount: 12
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | event service: False
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | sizes: {0: 2426679, 1: 2426821, 6: 2427027, 11: 2427055, 5708: 2453776, 5709: 2462733, 5712: 2462917, 5718: 2463087}
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | --------------------------------------------------
[2025-04-19 14:52:30] 2025-04-19 12:52:14,816 | INFO     | 
[2025-04-19 14:52:30] 2025-04-19 12:52:14,817 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/14
[2025-04-19 14:52:30] 2025-04-19 12:52:14,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 14:52:30] 2025-04-19 12:52:14,846 | INFO     | job 6600621086 has completed (purged errors)
[2025-04-19 14:52:30] 2025-04-19 12:52:14,846 | INFO     | overall cleanup function is called
[2025-04-19 14:52:30] 2025-04-19 12:52:15,853 | INFO     | --- collectZombieJob: --- 10, [2975227]
[2025-04-19 14:52:30] 2025-04-19 12:52:15,853 | INFO     | zombie collector waiting for pid 2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:15,853 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 14:52:30] 2025-04-19 12:52:15,853 | INFO     | collected zombie processes
[2025-04-19 14:52:30] 2025-04-19 12:52:15,854 | INFO     | will attempt to kill all subprocesses of pid=2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:16,435 | INFO     | process IDs to be killed: [2975227] (in reverse order)
[2025-04-19 14:52:30] 2025-04-19 12:52:16,610 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 14:52:30] 2025-04-19 12:52:16,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 14:52:30] 2025-04-19 12:52:16,628 | INFO     | did not find any defunct processes belonging to 2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:16,646 | INFO     | did not find any defunct processes belonging to 2975227
[2025-04-19 14:52:30] 2025-04-19 12:52:16,646 | INFO     | ready for new job
[2025-04-19 14:52:30] 2025-04-19 12:52:16,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 14:52:30] 2025-04-19 12:52:16,648 | INFO     | **************************************
[2025-04-19 14:52:30] 2025-04-19 12:52:16,648 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 14:52:30] 2025-04-19 12:52:16,648 | INFO     | **************************************
[2025-04-19 14:52:30] 2025-04-19 12:52:16,648 | INFO     | 
[2025-04-19 14:52:30] 2025-04-19 12:52:16,659 | INFO     | architecture information:
[2025-04-19 14:52:30] 2025-04-19 12:52:16,660 | INFO     | executing command: cat /etc/os-release
[2025-04-19 14:52:30] 2025-04-19 12:52:16,679 | INFO     | cat /etc/os-release:
[2025-04-19 14:52:30] NAME="CentOS Linux"
[2025-04-19 14:52:30] VERSION="7 (Core)"
[2025-04-19 14:52:30] ID="centos"
[2025-04-19 14:52:30] ID_LIKE="rhel fedora"
[2025-04-19 14:52:30] VERSION_ID="7"
[2025-04-19 14:52:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 14:52:30] ANSI_COLOR="0;31"
[2025-04-19 14:52:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 14:52:30] HOME_URL="https://www.centos.org/"
[2025-04-19 14:52:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 14:52:30] 
[2025-04-19 14:52:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 14:52:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 14:52:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 14:52:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 14:52:30] 
[2025-04-19 14:52:30] 2025-04-19 12:52:16,679 | INFO     | **************************************
[2025-04-19 14:52:30] 2025-04-19 12:52:17,181 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/14
[2025-04-19 14:52:30] 2025-04-19 12:52:17,203 | INFO     | sufficient remaining disk space (175141552128 B)
[2025-04-19 14:52:30] 2025-04-19 12:52:17,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 14:52:30] 2025-04-19 12:52:17,204 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 14:52:30] 2025-04-19 12:52:17,204 | INFO     | update_server=False
[2025-04-19 14:52:30] 2025-04-19 12:52:17,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 14:52:30] 2025-04-19 12:52:17,204 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 14:52:30] 2025-04-19 12:52:17,205 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 14:52:30] 2025-04-19 12:52:17,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 14:52:30] 2025-04-19 12:52:17,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 14:52:30] 2025-04-19 12:52:17,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 14:52:30] 2025-04-19 12:52:17,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:52:30] 2025-04-19 12:52:17,206 | INFO     | aborting loop
[2025-04-19 14:52:30] 2025-04-19 12:52:17,213 | INFO     | all data control threads have been joined
[2025-04-19 14:52:30] 2025-04-19 12:52:17,323 | INFO     | all job control threads have been joined
[2025-04-19 14:52:30] 2025-04-19 12:52:17,921 | INFO     | all payload control threads have been joined
[2025-04-19 14:52:30] 2025-04-19 12:52:18,209 | INFO     | [job] retrieve thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,210 | INFO     | [job] job monitor thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,217 | INFO     | [data] control thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,325 | INFO     | [job] control thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,741 | INFO     | [payload] validate_post thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,925 | INFO     | [payload] control thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:18,973 | INFO     | [job] validate thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,153 | INFO     | [payload] failed_post thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,197 | INFO     | [data] copytool_in thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,213 | INFO     | [data] copytool_out thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,242 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,397 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 14:52:30] 2025-04-19 12:52:19,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,674 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:19,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:52:30] 2025-04-19 12:52:20,828 | INFO     | [job] queue monitor thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:23,426 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 14:52:30] 2025-04-19 12:52:25,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140242400896832)>', '<ExcThread(monitor, started 140242174076672)>']
[2025-04-19 14:52:30] 2025-04-19 12:52:26,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 14:52:30] 2025-04-19 12:52:26,237 | INFO     | [monitor] control thread has ended
[2025-04-19 14:52:30] 2025-04-19 12:52:30,404 | INFO     | all workflow threads have been joined
[2025-04-19 14:52:30] 2025-04-19 12:52:30,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 14:52:30] 2025-04-19 12:52:30,404 | INFO     | traces error code: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:30,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 14:52:30] 2025-04-19 12:52:30,544 [wrapper] ==== pilot stdout END ====
[2025-04-19 14:52:30] 2025-04-19 12:52:30,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 14:52:30] 2025-04-19 12:52:30,552 [wrapper] pilotpid: 2939564
[2025-04-19 14:52:30] 2025-04-19 12:52:30,555 [wrapper] Pilot exit status: 0
[2025-04-19 14:52:30] 2025-04-19 12:52:30,567 [wrapper] pandaids: 6600621086
[2025-04-19 14:52:30] 2025-04-19 12:52:30,688 [wrapper] cleanup supervisor_pilot 3463990 2939566
[2025-04-19 14:52:30] 2025-04-19 12:52:30,692 [wrapper] Test setup, not cleaning
[2025-04-19 14:52:30] 2025-04-19 12:52:30,695 [wrapper] apfmon messages muted
[2025-04-19 14:52:30] 2025-04-19 12:52:30,698 [wrapper] ==== wrapper stdout END ====
[2025-04-19 14:52:30] 2025-04-19 12:52:30,701 [wrapper] ==== wrapper stderr END ====
[2025-04-19 14:52:30]  *** Error codes and diagnostics ***
[2025-04-19 14:52:30]     "exeErrorCode": 0,
[2025-04-19 14:52:30]     "exeErrorDiag": "",
[2025-04-19 14:52:30]     "pilotErrorCode": 0,
[2025-04-19 14:52:30]     "pilotErrorDiag": "",
[2025-04-19 14:52:30]  *** Listing of results directory ***
[2025-04-19 14:52:30] insgesamt 412484
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc    495897 Apr 13 02:55 pilot3.tar.gz
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc      5111 Apr 13 03:06 queuedata.json
[2025-04-19 14:52:30] -rwx------ 1 boinc boinc     37140 Apr 13 03:07 runpilot2-wrapper.sh
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc       100 Apr 19 13:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 14:52:30] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 13:16 run_atlas
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc       105 Apr 19 13:16 job.xml
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc 219693179 Apr 19 13:16 EVNT.44075162._001984.pool.root.1
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc     17569 Apr 19 13:16 start_atlas.sh
[2025-04-19 14:52:30] drwxrwx--x 2 boinc boinc      4096 Apr 19 13:16 shared
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc    508880 Apr 19 13:16 input.tar.gz
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc      6635 Apr 19 13:16 init_data.xml
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc         0 Apr 19 13:16 boinc_lockfile
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc      2550 Apr 19 13:16 pandaJob.out
[2025-04-19 14:52:30] -rw------- 1 boinc boinc       456 Apr 19 13:16 setup.sh.local
[2025-04-19 14:52:30] -rw------- 1 boinc boinc    991292 Apr 19 13:16 agis_schedconf.cvmfs.json
[2025-04-19 14:52:30] -rw------- 1 boinc boinc   1618536 Apr 19 13:16 agis_ddmendpoints.agis.ALL.json
[2025-04-19 14:52:30] drwx------ 4 boinc boinc      4096 Apr 19 13:16 pilot3
[2025-04-19 14:52:30] -rw------- 1 boinc boinc 197010605 Apr 19 14:51 HITS.44075164._051230.pool.root.1
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc       530 Apr 19 14:51 boinc_task_state.xml
[2025-04-19 14:52:30] -rw------- 1 boinc boinc      1029 Apr 19 14:52 memory_monitor_summary.json
[2025-04-19 14:52:30] -rw------- 1 boinc boinc    372346 Apr 19 14:52 log.44075164._051230.job.log.tgz.1
[2025-04-19 14:52:30] -rw------- 1 boinc boinc        95 Apr 19 14:52 pilot_heartbeat.json
[2025-04-19 14:52:30] -rw------- 1 boinc boinc      7672 Apr 19 14:52 heartbeat.json
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc        27 Apr 19 14:52 wrapper_checkpoint.txt
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc      8192 Apr 19 14:52 boinc_mmap_file
[2025-04-19 14:52:30] -rw------- 1 boinc boinc      4485 Apr 19 14:52 pilotlog.txt
[2025-04-19 14:52:30] -rw------- 1 boinc boinc    531814 Apr 19 14:52 log.44075164._051230.job.log.1
[2025-04-19 14:52:30] -rw------- 1 boinc boinc       357 Apr 19 14:52 output.list
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc       620 Apr 19 14:52 runtime_log
[2025-04-19 14:52:30] -rw------- 1 boinc boinc    921600 Apr 19 14:52 result.tar.gz
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc     11539 Apr 19 14:52 runtime_log.err
[2025-04-19 14:52:30] -rw------- 1 boinc boinc       664 Apr 19 14:52 eATKDmUz0N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdkSLDm1ymyEo.diag
[2025-04-19 14:52:30] -rw-r--r-- 1 boinc boinc     21271 Apr 19 14:52 stderr.txt
[2025-04-19 14:52:30] HITS file was successfully produced:
[2025-04-19 14:52:30] -rw------- 1 boinc boinc 197010605 Apr 19 14:51 shared/HITS.pool.root.1
[2025-04-19 14:52:30]  *** Contents of shared directory: ***
[2025-04-19 14:52:30] insgesamt 408372
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc 219693179 Apr 19 13:16 ATLAS.root_0
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc     17569 Apr 19 13:16 start_atlas.sh
[2025-04-19 14:52:30] -rw-r--r-- 2 boinc boinc    508880 Apr 19 13:16 input.tar.gz
[2025-04-19 14:52:30] -rw------- 1 boinc boinc 197010605 Apr 19 14:51 HITS.pool.root.1
[2025-04-19 14:52:30] -rw------- 1 boinc boinc    921600 Apr 19 14:52 result.tar.gz
14:52:32 (2922978): run_atlas exited; CPU time 45267.769583
14:52:32 (2922978): called boinc_finish(0)

</stderr_txt>
]]>

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