Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:57:12 (151434): wrapper (7.7.26015): starting
13:57:12 (151434): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 13:57:12] Arguments: --nthreads 4
[2025-04-19 13:57:12] Threads: 4
[2025-04-19 13:57:12] Checking for CVMFS
[2025-04-19 13:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 13:57:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 13:57:12] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 13:57:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 13:57:12] 2.9.2.0 3016 269 65108 145037 3 55 35920578 36864000 0 130560 0 381006 99.994 79694 22874 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 13:57:12] CVMFS is ok
[2025-04-19 13:57:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 13:57:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 13:57:12] Further information can be found at the LHC@home message board.
[2025-04-19 13:57:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 13:57:12] Checking for apptainer binary...
[2025-04-19 13:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 13:57:13] Running /usr/bin/apptainer --version
[2025-04-19 13:57:13] apptainer version 1.3.6-6.1
[2025-04-19 13:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 13:57:13] belleA253b
[2025-04-19 13:57:13] apptainer works
[2025-04-19 13:57:13] Set ATHENA_PROC_NUMBER=4
[2025-04-19 13:57:13] Set ATHENA_CORE_NUMBER=4
[2025-04-19 13:57:13] Starting ATLAS job with PandaID=6607431082
[2025-04-19 13:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 14:10:56]  *** The last 200 lines of the pilot log: ***
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | wrong length of table data, x=[1745064169.0, 1745064230.0, 1745064291.0, 1745064352.0], y=[1425030.0, 1448205.0, 1386516.0, 1314564.0] (must be same and length>=4)
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . Timing measurements:
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . get job = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . initial setup = 1 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload setup = 4 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-in = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload execution = 659 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-out = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . log creation = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607431082/pilotlog.txt
[2025-04-19 14:10:56] 2025-04-19 12:10:44,009 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-19 14:10:56] - Log from pilotlog.txt -
[2025-04-19 14:10:56] 2025-04-19 12:10:43,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 14:10:56] 2025-04-19 12:10:43,993 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607431082/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | extracted standard info from prmon json
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | wrong length of table data, x=[1745064169.0, 1745064230.0, 1745064291.0, 1745064352.0], y=[1425030.0, 1448205.0, 1386516.0, 1314564.0] (must be same and length>=4)
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . Timing measurements:
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . get job = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . initial setup = 1 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload setup = 4 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-in = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload execution = 659 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-out = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . log creation = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607431082/pilotlog.txt
[2025-04-19 14:10:56] 2025-04-19 12:10:44,009 | WARNING  | 
[2025-04-19 14:10:56] [begin log extracts]
[2025-04-19 14:10:56] - Log from pilotlog.txt -
[2025-04-19 14:10:56] 2025-04-19 12:10:43,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 14:10:56] 2025-04-19 12:10:43,993 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607431082/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | extracted standard info from prmon json
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | WARNING  | wrong length of table data, x=[1745064169.0, 1745064230.0, 1745064291.0, 1745064352.0], y=[1425030.0, 1448205.0, 1386516.0, 1314564.0] (must be same and length>=4)
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . Timing measurements:
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . get job = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,994 | INFO     | . initial setup = 1 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload setup = 4 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-in = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . payload execution = 659 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . stage-out = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | . log creation = 0 s
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | ..............................
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-19 14:10:56] 2025-04-19 12:10:43,995 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6607431082/pilotlog.txt
[2025-04-19 14:10:56] [end log extracts]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,009 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,009 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | job summary report
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | --------------------------------------------------
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | PanDA job id: 6607431082
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | task id: 44075483
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-19 12:08:34,965 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | pilot error code: 1328
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | pilot state: failed 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | transexitcode: 65
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | exeerrorcode: 0
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | exeerrordiag: 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,051 | INFO     | exitcode: 65
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | cpuconsumptiontime: 108 s
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | nevents: 0
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | neventsw: 0
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | pid: 161760
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | pgrp: 161760
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | corecount: 4
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | event service: False
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | sizes: {0: 2426826, 4: 2427032, 11: 2427060, 667: 2451602, 668: 2455899, 789: 2456013}
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | --------------------------------------------------
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | 
[2025-04-19 14:10:56] 2025-04-19 12:10:44,052 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | job 6607431082 has completed (purged errors)
[2025-04-19 14:10:56] 2025-04-19 12:10:44,072 | INFO     | overall cleanup function is called
[2025-04-19 14:10:56] 2025-04-19 12:10:45,074 | INFO     | --- collectZombieJob: --- 10, [161760]
[2025-04-19 14:10:56] 2025-04-19 12:10:45,074 | INFO     | zombie collector waiting for pid 161760
[2025-04-19 14:10:56] 2025-04-19 12:10:45,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 14:10:56] 2025-04-19 12:10:45,074 | INFO     | collected zombie processes
[2025-04-19 14:10:56] 2025-04-19 12:10:45,074 | INFO     | will attempt to kill all subprocesses of pid=161760
[2025-04-19 14:10:56] 2025-04-19 12:10:45,118 | INFO     | process IDs to be killed: [161760] (in reverse order)
[2025-04-19 14:10:56] 2025-04-19 12:10:45,152 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 14:10:56] 2025-04-19 12:10:45,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 14:10:56] 2025-04-19 12:10:45,154 | INFO     | did not find any defunct processes belonging to 161760
[2025-04-19 14:10:56] 2025-04-19 12:10:45,155 | INFO     | did not find any defunct processes belonging to 161760
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | ready for new job
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | **************************************
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | **************************************
[2025-04-19 14:10:56] 2025-04-19 12:10:45,156 | INFO     | 
[2025-04-19 14:10:56] 2025-04-19 12:10:45,157 | INFO     | architecture information:
[2025-04-19 14:10:56] 2025-04-19 12:10:45,157 | INFO     | executing command: cat /etc/os-release
[2025-04-19 14:10:56] 2025-04-19 12:10:45,172 | INFO     | cat /etc/os-release:
[2025-04-19 14:10:56] NAME="CentOS Linux"
[2025-04-19 14:10:56] VERSION="7 (Core)"
[2025-04-19 14:10:56] ID="centos"
[2025-04-19 14:10:56] ID_LIKE="rhel fedora"
[2025-04-19 14:10:56] VERSION_ID="7"
[2025-04-19 14:10:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 14:10:56] ANSI_COLOR="0;31"
[2025-04-19 14:10:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 14:10:56] HOME_URL="https://www.centos.org/"
[2025-04-19 14:10:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 14:10:56] 
[2025-04-19 14:10:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 14:10:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 14:10:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 14:10:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 14:10:56] 
[2025-04-19 14:10:56] 2025-04-19 12:10:45,172 | INFO     | **************************************
[2025-04-19 14:10:56] 2025-04-19 12:10:45,675 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | INFO     | sufficient remaining disk space (320637763584 B)
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | INFO     | update_server=False
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:10:56] 2025-04-19 12:10:45,694 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 14:10:56] 2025-04-19 12:10:45,695 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 14:10:56] 2025-04-19 12:10:45,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 14:10:56] 2025-04-19 12:10:45,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 14:10:56] 2025-04-19 12:10:45,760 | INFO     | all data control threads have been joined
[2025-04-19 14:10:56] 2025-04-19 12:10:45,890 | INFO     | all job control threads have been joined
[2025-04-19 14:10:56] 2025-04-19 12:10:45,974 | INFO     | all payload control threads have been joined
[2025-04-19 14:10:56] 2025-04-19 12:10:45,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:10:56] 2025-04-19 12:10:45,983 | INFO     | aborting loop
[2025-04-19 14:10:56] 2025-04-19 12:10:46,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 14:10:56] 2025-04-19 12:10:46,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 14:10:56] 2025-04-19 12:10:46,700 | INFO     | [job] queue monitor thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,700 | INFO     | [job] retrieve thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,766 | INFO     | [data] control thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,775 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,895 | INFO     | [job] control thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,980 | INFO     | [payload] control thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:46,989 | INFO     | [job] job monitor thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,048 | INFO     | [payload] failed_post thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,080 | INFO     | [data] copytool_in thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,657 | INFO     | [job] validate thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,762 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:47,851 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:48,072 | INFO     | [payload] validate_post thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:48,169 | INFO     | [data] copytool_out thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:50,151 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 14:10:56] 2025-04-19 12:10:51,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901621667648)>', '<ExcThread(monitor, started 139900674356992)>']
[2025-04-19 14:10:56] 2025-04-19 12:10:51,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 14:10:56] 2025-04-19 12:10:51,727 | INFO     | [monitor] control thread has ended
[2025-04-19 14:10:56] 2025-04-19 12:10:56,595 | INFO     | all workflow threads have been joined
[2025-04-19 14:10:56] 2025-04-19 12:10:56,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 14:10:56] 2025-04-19 12:10:56,596 | INFO     | traces error code: 0
[2025-04-19 14:10:56] 2025-04-19 12:10:56,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 14:10:56] 2025-04-19 12:10:56,675 [wrapper] ==== pilot stdout END ====
[2025-04-19 14:10:56] 2025-04-19 12:10:56,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 14:10:56] 2025-04-19 12:10:56,684 [wrapper] pilotpid: 155183
[2025-04-19 14:10:56] 2025-04-19 12:10:56,688 [wrapper] Pilot exit status: 0
[2025-04-19 14:10:56] 2025-04-19 12:10:56,701 [wrapper] pandaids: 6607431082
[2025-04-19 14:10:56] 2025-04-19 12:10:56,724 [wrapper] cleanup supervisor_pilot  155189 155184
[2025-04-19 14:10:56] 2025-04-19 12:10:56,728 [wrapper] Test setup, not cleaning
[2025-04-19 14:10:56] 2025-04-19 12:10:56,733 [wrapper] apfmon messages muted
[2025-04-19 14:10:56] 2025-04-19 12:10:56,737 [wrapper] ==== wrapper stdout END ====
[2025-04-19 14:10:56] 2025-04-19 12:10:56,741 [wrapper] ==== wrapper stderr END ====
[2025-04-19 14:10:56]  *** Error codes and diagnostics ***
[2025-04-19 14:10:56]     "exeErrorCode": 0,
[2025-04-19 14:10:56]     "exeErrorDiag": "",
[2025-04-19 14:10:56]     "pilotErrorCode": 1305,
[2025-04-19 14:10:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2025-04-19 14:10:56]  *** Listing of results directory ***
[2025-04-19 14:10:56] total 222980
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc    495897 Apr 19 08:22 pilot3.tar.gz
[2025-04-19 14:10:56] -rwx------ 1 boinc boinc     37140 Apr 19 08:26 runpilot2-wrapper.sh
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc      5111 Apr 19 08:26 queuedata.json
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc       100 Apr 19 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 14:10:56] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 13:57 run_atlas
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc       105 Apr 19 13:57 job.xml
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc 223934836 Apr 19 13:57 EVNT.44075481._003060.pool.root.1
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc      6863 Apr 19 13:57 init_data.xml
[2025-04-19 14:10:56] drwxrwx--x 2 boinc boinc      4096 Apr 19 13:57 shared
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc    508889 Apr 19 13:57 input.tar.gz
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc     17569 Apr 19 13:57 start_atlas.sh
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc         0 Apr 19 13:57 boinc_lockfile
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc      2578 Apr 19 13:57 pandaJob.out
[2025-04-19 14:10:56] -rw------- 1 boinc boinc       424 Apr 19 13:57 setup.sh.local
[2025-04-19 14:10:56] -rw------- 1 boinc boinc    991292 Apr 19 13:57 agis_schedconf.cvmfs.json
[2025-04-19 14:10:56] -rw------- 1 boinc boinc   1618536 Apr 19 13:57 agis_ddmendpoints.agis.ALL.json
[2025-04-19 14:10:56] drwx------ 4 boinc boinc      4096 Apr 19 13:57 pilot3
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc       526 Apr 19 14:08 boinc_task_state.xml
[2025-04-19 14:10:56] -rw------- 1 boinc boinc      1006 Apr 19 14:08 memory_monitor_summary.json
[2025-04-19 14:10:56] -rw------- 1 boinc boinc    136161 Apr 19 14:08 log.44075483._078884.job.log.tgz.1
[2025-04-19 14:10:56] -rw------- 1 boinc boinc        95 Apr 19 14:10 pilot_heartbeat.json
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc      8192 Apr 19 14:10 boinc_mmap_file
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc        24 Apr 19 14:10 wrapper_checkpoint.txt
[2025-04-19 14:10:56] -rw------- 1 boinc boinc      8476 Apr 19 14:10 heartbeat.json
[2025-04-19 14:10:56] -rw------- 1 boinc boinc      4480 Apr 19 14:10 pilotlog.txt
[2025-04-19 14:10:56] -rw------- 1 boinc boinc    126387 Apr 19 14:10 log.44075483._078884.job.log.1
[2025-04-19 14:10:56] -rw------- 1 boinc boinc       188 Apr 19 14:10 output.list
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc       620 Apr 19 14:10 runtime_log
[2025-04-19 14:10:56] -rw------- 1 boinc boinc    286720 Apr 19 14:10 result.tar.gz
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc     10966 Apr 19 14:10 runtime_log.err
[2025-04-19 14:10:56] -rw------- 1 boinc boinc       654 Apr 19 14:10 Ij2MDmJqGQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmpD6KDmUm6mqm.diag
[2025-04-19 14:10:56] -rw-r--r-- 1 boinc boinc     21948 Apr 19 14:10 stderr.txt
[2025-04-19 14:10:56] No HITS result produced
[2025-04-19 14:10:56]  *** Contents of shared directory: ***
[2025-04-19 14:10:56] total 219492
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc 223934836 Apr 19 13:57 ATLAS.root_0
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc    508889 Apr 19 13:57 input.tar.gz
[2025-04-19 14:10:56] -rw-r--r-- 2 boinc boinc     17569 Apr 19 13:57 start_atlas.sh
[2025-04-19 14:10:56] -rw------- 1 boinc boinc    286720 Apr 19 14:10 result.tar.gz
14:10:58 (151434): run_atlas exited; CPU time 105.912586
14:10:58 (151434): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN