Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:05:18 (1523134): wrapper (7.7.26015): starting
15:05:18 (1523134): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 15:05:18] Arguments: --nthreads 3
[2025-04-19 15:05:18] Threads: 3
[2025-04-19 15:05:18] Checking for CVMFS
[2025-04-19 15:05:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 15:05:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 15:05:18] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 15:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 15:05:19] 2.9.2.0 2830 5985 71380 145038 3 56 24839276 36864000 0 130560 0 3940458 99.989 1585154 9582 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 15:05:19] CVMFS is ok
[2025-04-19 15:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 15:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 15:05:19] Further information can be found at the LHC@home message board.
[2025-04-19 15:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 15:05:19] Checking for apptainer binary...
[2025-04-19 15:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 15:05:19] Running /usr/bin/apptainer --version
[2025-04-19 15:05:19] apptainer version 1.3.6-6.1
[2025-04-19 15:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 15:05:19] thA389a
[2025-04-19 15:05:19] apptainer works
[2025-04-19 15:05:19] Set ATHENA_PROC_NUMBER=3
[2025-04-19 15:05:19] Set ATHENA_CORE_NUMBER=3
[2025-04-19 15:05:19] Starting ATLAS job with PandaID=6607431074
[2025-04-19 15:05:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 16:42:51]  *** The last 200 lines of the pilot log: ***
[2025-04-19 16:42:51]  filetype=log
[2025-04-19 16:42:51]  guid=e8284b66-ef79-4bd8-99f3-590a1789b5e8
[2025-04-19 16:42:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 16:42:51]  is_altstaged=None
[2025-04-19 16:42:51]  is_tar=False
[2025-04-19 16:42:51]  lfn=log.44075483._078876.job.log.tgz.1
[2025-04-19 16:42:51]  mtime=0
[2025-04-19 16:42:51]  protocol_id=None
[2025-04-19 16:42:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 16:42:51]  replicas=None
[2025-04-19 16:42:51]  scope=mc23_13p6TeV
[2025-04-19 16:42:51]  status=None
[2025-04-19 16:42:51]  status_code=0
[2025-04-19 16:42:51]  storage_token=
[2025-04-19 16:42:51]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6607431074/log.44075483._078876.job.log.tgz.1
[2025-04-19 16:42:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/5e/log.44075483._078876.job.log.tgz.1
[2025-04-19 16:42:51]  workdir=None
[2025-04-19 16:42:51] ]
[2025-04-19 16:42:51] 2025-04-19 14:42:24,218 | INFO     | transferring file log.44075483._078876.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6607431074/log.44075483._078876.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 16:42:51] 2025-04-19 14:42:24,218 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6607431074/log.44075483._078876.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0788
[2025-04-19 16:42:51] 2025-04-19 14:42:24,230 | INFO     | adding to output.list: log.44075483._078876.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/5e/log.44075483._078876.job.log.tg
[2025-04-19 16:42:51] 2025-04-19 14:42:24,231 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 16:42:51] 2025-04-19 14:42:24,231 | INFO     | summary of transferred files:
[2025-04-19 16:42:51] 2025-04-19 14:42:24,231 | INFO     |  -- lfn=log.44075483._078876.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 16:42:51] 2025-04-19 14:42:24,231 | INFO     | stage-out finished correctly
[2025-04-19 16:42:51] 2025-04-19 14:42:24,263 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 16:42:51] 2025-04-19 14:42:26,585 | INFO     | monitor loop #447: job 0:6607431074 is in state 'finished'
[2025-04-19 16:42:51] 2025-04-19 14:42:26,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 16:42:51] 2025-04-19 14:42:26,916 | INFO     | job 6607431074 has state=finished
[2025-04-19 16:42:51] 2025-04-19 14:42:26,916 | INFO     | preparing for final server update for job 6607431074 in state='finished'
[2025-04-19 16:42:51] 2025-04-19 14:42:26,917 | INFO     | this job has now completed (state=finished)
[2025-04-19 16:42:51] 2025-04-19 14:42:26,917 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 16:42:51] 2025-04-19 14:42:26,917 | INFO     | log transfer has been attempted: DONE
[2025-04-19 16:42:51] 2025-04-19 14:42:26,918 | INFO     | job 6607431074 has finished - writing final server update
[2025-04-19 16:42:51] 2025-04-19 14:42:26,918 | INFO     | total number of processed events: 400 (read)
[2025-04-19 16:42:51] 2025-04-19 14:42:26,920 | INFO     | executing command: lscpu
[2025-04-19 16:42:51] 2025-04-19 14:42:26,933 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 16:42:51] 2025-04-19 14:42:29,089 | INFO     | monitor loop #448: job 0:6607431074 is in state 'finished'
[2025-04-19 16:42:51] 2025-04-19 14:42:29,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 16:42:51] 2025-04-19 14:42:29,529 | INFO     | PID=1526795 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607431074/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | INFO     | extracted standard info from prmon json
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 16:42:51] 2025-04-19 14:42:31,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 16:42:51] 2025-04-19 14:42:31,308 | INFO     | fitting pss+swap vs Time
[2025-04-19 16:42:51] 2025-04-19 14:42:31,308 | INFO     | sum of square deviations: 211285822.0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,308 | INFO     | sum of deviations: 13704308860.999998
[2025-04-19 16:42:51] 2025-04-19 14:42:31,308 | INFO     | mean x: 1745070911.5
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | mean y: 2296035.7045454546
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | -- intersect: -113185567348.44054
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | intersect: -113185567348.44054
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | chi2: 1.0262532036138314
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | -- intersect: -113185567348.44054
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | current memory leak: 64.86 B/s (using 88 data points, chi2=1.03)
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | ..............................
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . Timing measurements:
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . get job = 0 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . initial setup = 1 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . payload setup = 5 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . stage-in = 0 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . payload execution = 5790 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . stage-out = 0 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | . log creation = 0 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,309 | INFO     | ..............................
[2025-04-19 16:42:51] 2025-04-19 14:42:31,742 | INFO     | 
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | job summary report
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | --------------------------------------------------
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | PanDA job id: 6607431074
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | task id: 44075483
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | errors: (none)
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 16:42:51] 2025-04-19 14:42:31,743 | INFO     | pilot state: finished 
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | transexitcode: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | exeerrorcode: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | exeerrordiag: 
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | exitcode: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | exitmsg: OK
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | cpuconsumptiontime: 15494 s
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | nevents: 400
[2025-04-19 16:42:51] 2025-04-19 14:42:31,744 | INFO     | neventsw: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | pid: 1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | pgrp: 1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | corecount: 3
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | event service: False
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | sizes: {0: 2426776, 5: 2426982, 11: 2427038, 5800: 2462625, 5807: 2462739}
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | --------------------------------------------------
[2025-04-19 16:42:51] 2025-04-19 14:42:31,745 | INFO     | 
[2025-04-19 16:42:51] 2025-04-19 14:42:31,746 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | job 6607431074 has completed (purged errors)
[2025-04-19 16:42:51] 2025-04-19 14:42:31,760 | INFO     | overall cleanup function is called
[2025-04-19 16:42:51] 2025-04-19 14:42:32,766 | INFO     | --- collectZombieJob: --- 10, [1533235]
[2025-04-19 16:42:51] 2025-04-19 14:42:32,766 | INFO     | zombie collector waiting for pid 1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:32,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 16:42:51] 2025-04-19 14:42:32,767 | INFO     | collected zombie processes
[2025-04-19 16:42:51] 2025-04-19 14:42:32,767 | INFO     | will attempt to kill all subprocesses of pid=1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:32,806 | INFO     | process IDs to be killed: [1533235] (in reverse order)
[2025-04-19 16:42:51] 2025-04-19 14:42:32,832 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 16:42:51] 2025-04-19 14:42:32,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 16:42:51] 2025-04-19 14:42:32,833 | INFO     | did not find any defunct processes belonging to 1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:32,834 | INFO     | did not find any defunct processes belonging to 1533235
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | ready for new job
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | **************************************
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | **************************************
[2025-04-19 16:42:51] 2025-04-19 14:42:32,835 | INFO     | 
[2025-04-19 16:42:51] 2025-04-19 14:42:32,836 | INFO     | architecture information:
[2025-04-19 16:42:51] 2025-04-19 14:42:32,836 | INFO     | executing command: cat /etc/os-release
[2025-04-19 16:42:51] 2025-04-19 14:42:32,846 | INFO     | cat /etc/os-release:
[2025-04-19 16:42:51] NAME="CentOS Linux"
[2025-04-19 16:42:51] VERSION="7 (Core)"
[2025-04-19 16:42:51] ID="centos"
[2025-04-19 16:42:51] ID_LIKE="rhel fedora"
[2025-04-19 16:42:51] VERSION_ID="7"
[2025-04-19 16:42:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 16:42:51] ANSI_COLOR="0;31"
[2025-04-19 16:42:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 16:42:51] HOME_URL="https://www.centos.org/"
[2025-04-19 16:42:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 16:42:51] 
[2025-04-19 16:42:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 16:42:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 16:42:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 16:42:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 16:42:51] 
[2025-04-19 16:42:51] 2025-04-19 14:42:32,846 | INFO     | **************************************
[2025-04-19 16:42:51] 2025-04-19 14:42:33,349 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | INFO     | sufficient remaining disk space (231025410048 B)
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | INFO     | update_server=False
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 16:42:51] 2025-04-19 14:42:33,363 | INFO     | aborting loop
[2025-04-19 16:42:51] 2025-04-19 14:42:33,527 | INFO     | all data control threads have been joined
[2025-04-19 16:42:51] 2025-04-19 14:42:33,542 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 16:42:51] 2025-04-19 14:42:33,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 16:42:51] 2025-04-19 14:42:33,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 16:42:51] 2025-04-19 14:42:34,347 | INFO     | all job control threads have been joined
[2025-04-19 16:42:51] 2025-04-19 14:42:34,369 | INFO     | [job] retrieve thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:34,369 | INFO     | [job] job monitor thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:34,388 | INFO     | [data] copytool_in thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:34,533 | INFO     | [data] control thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:34,543 | INFO     | all payload control threads have been joined
[2025-04-19 16:42:51] 2025-04-19 14:42:34,558 | INFO     | [payload] validate_post thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:34,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 16:42:51] 2025-04-19 14:42:34,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 16:42:51] 2025-04-19 14:42:35,353 | INFO     | [job] control thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,375 | INFO     | [payload] failed_post thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,427 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,428 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,429 | INFO     | [job] validate thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,548 | INFO     | [payload] control thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:35,781 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:36,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 16:42:51] 2025-04-19 14:42:36,783 | INFO     | [data] copytool_out thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:37,359 | INFO     | [job] queue monitor thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:38,810 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:43,589 | INFO     | job.realtimelogging is not enabled
[2025-04-19 16:42:51] 2025-04-19 14:42:44,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 16:42:51] 2025-04-19 14:42:46,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774966282048)>', '<ExcThread(monitor, started 139774291580672)>']
[2025-04-19 16:42:51] 2025-04-19 14:42:46,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 16:42:51] 2025-04-19 14:42:46,610 | INFO     | [monitor] control thread has ended
[2025-04-19 16:42:51] 2025-04-19 14:42:51,512 | INFO     | all workflow threads have been joined
[2025-04-19 16:42:51] 2025-04-19 14:42:51,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 16:42:51] 2025-04-19 14:42:51,513 | INFO     | traces error code: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:51,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 16:42:51] 2025-04-19 14:42:51,561 [wrapper] ==== pilot stdout END ====
[2025-04-19 16:42:51] 2025-04-19 14:42:51,564 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 16:42:51] 2025-04-19 14:42:51,567 [wrapper] pilotpid: 1526795
[2025-04-19 16:42:51] 2025-04-19 14:42:51,570 [wrapper] Pilot exit status: 0
[2025-04-19 16:42:51] 2025-04-19 14:42:51,578 [wrapper] pandaids: 6607431074
[2025-04-19 16:42:51] 2025-04-19 14:42:51,593 [wrapper] cleanup supervisor_pilot 1545526 1526796
[2025-04-19 16:42:51] 2025-04-19 14:42:51,596 [wrapper] Test setup, not cleaning
[2025-04-19 16:42:51] 2025-04-19 14:42:51,598 [wrapper] apfmon messages muted
[2025-04-19 16:42:51] 2025-04-19 14:42:51,601 [wrapper] ==== wrapper stdout END ====
[2025-04-19 16:42:51] 2025-04-19 14:42:51,603 [wrapper] ==== wrapper stderr END ====
[2025-04-19 16:42:51]  *** Error codes and diagnostics ***
[2025-04-19 16:42:51]     "exeErrorCode": 0,
[2025-04-19 16:42:51]     "exeErrorDiag": "",
[2025-04-19 16:42:51]     "pilotErrorCode": 0,
[2025-04-19 16:42:51]     "pilotErrorDiag": "",
[2025-04-19 16:42:51]  *** Listing of results directory ***
[2025-04-19 16:42:51] total 413460
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc    495897 Apr 19 08:22 pilot3.tar.gz
[2025-04-19 16:42:51] -rwx------ 1 boinc boinc     37140 Apr 19 08:26 runpilot2-wrapper.sh
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc      5111 Apr 19 08:26 queuedata.json
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc       100 Apr 19 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 16:42:51] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 15:05 run_atlas
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc       105 Apr 19 15:05 job.xml
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc 223934836 Apr 19 15:05 EVNT.44075481._003060.pool.root.1
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc      6680 Apr 19 15:05 init_data.xml
[2025-04-19 16:42:51] drwxrwx--x 2 boinc boinc      4096 Apr 19 15:05 shared
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc    508887 Apr 19 15:05 input.tar.gz
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc     17569 Apr 19 15:05 start_atlas.sh
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc         0 Apr 19 15:05 boinc_lockfile
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc      2578 Apr 19 15:05 pandaJob.out
[2025-04-19 16:42:51] -rw------- 1 boinc boinc       424 Apr 19 15:05 setup.sh.local
[2025-04-19 16:42:51] -rw------- 1 boinc boinc    991292 Apr 19 15:05 agis_schedconf.cvmfs.json
[2025-04-19 16:42:51] -rw------- 1 boinc boinc   1618536 Apr 19 15:05 agis_ddmendpoints.agis.ALL.json
[2025-04-19 16:42:51] drwx------ 4 boinc boinc      4096 Apr 19 15:05 pilot3
[2025-04-19 16:42:51] -rw------- 1 boinc boinc        95 Apr 19 16:41 pilot_heartbeat.json
[2025-04-19 16:42:51] -rw------- 1 boinc boinc 193981481 Apr 19 16:42 HITS.44075483._078876.pool.root.1
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc       530 Apr 19 16:42 boinc_task_state.xml
[2025-04-19 16:42:51] -rw------- 1 boinc boinc      1022 Apr 19 16:42 memory_monitor_summary.json
[2025-04-19 16:42:51] -rw------- 1 boinc boinc    241005 Apr 19 16:42 log.44075483._078876.job.log.tgz.1
[2025-04-19 16:42:51] -rw------- 1 boinc boinc      7658 Apr 19 16:42 heartbeat.json
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc      8192 Apr 19 16:42 boinc_mmap_file
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc        27 Apr 19 16:42 wrapper_checkpoint.txt
[2025-04-19 16:42:51] -rw------- 1 boinc boinc      4429 Apr 19 16:42 pilotlog.txt
[2025-04-19 16:42:51] -rw------- 1 boinc boinc    557833 Apr 19 16:42 log.44075483._078876.job.log.1
[2025-04-19 16:42:51] -rw------- 1 boinc boinc       357 Apr 19 16:42 output.list
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc       620 Apr 19 16:42 runtime_log
[2025-04-19 16:42:51] -rw------- 1 boinc boinc    819200 Apr 19 16:42 result.tar.gz
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc     11104 Apr 19 16:42 runtime_log.err
[2025-04-19 16:42:51] -rw------- 1 boinc boinc       659 Apr 19 16:42 kFiNDmkpGQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmhD6KDm1ZOyqn.diag
[2025-04-19 16:42:51] -rw-r--r-- 1 boinc boinc     21241 Apr 19 16:42 stderr.txt
[2025-04-19 16:42:51] HITS file was successfully produced:
[2025-04-19 16:42:51] -rw------- 1 boinc boinc 193981481 Apr 19 16:42 shared/HITS.pool.root.1
[2025-04-19 16:42:51]  *** Contents of shared directory: ***
[2025-04-19 16:42:51] total 409452
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc 223934836 Apr 19 15:05 ATLAS.root_0
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc    508887 Apr 19 15:05 input.tar.gz
[2025-04-19 16:42:51] -rw-r--r-- 2 boinc boinc     17569 Apr 19 15:05 start_atlas.sh
[2025-04-19 16:42:51] -rw------- 1 boinc boinc 193981481 Apr 19 16:42 HITS.pool.root.1
[2025-04-19 16:42:51] -rw------- 1 boinc boinc    819200 Apr 19 16:42 result.tar.gz
16:42:53 (1523134): run_atlas exited; CPU time 15522.397792
16:42:53 (1523134): called boinc_finish(0)

</stderr_txt>
]]>

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