Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 10:36:09 (12448): Detected: vboxwrapper 26206
2025-04-19 10:36:09 (12448): Detected: BOINC client v8.0.2
2025-04-19 10:36:09 (12448): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-19 10:36:10 (12448): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 10:36:10 (12448): Create VM. (boinc_435ab03e00590e47, slot#10)
2025-04-19 10:36:11 (12448): Setting Memory Size for VM. (4800MB)
2025-04-19 10:36:11 (12448): Setting CPU Count for VM. (8)
2025-04-19 10:36:11 (12448): Setting Chipset Options for VM.
2025-04-19 10:36:12 (12448): Setting Graphics Controller Options for VM.
2025-04-19 10:36:12 (12448): Setting Boot Options for VM.
2025-04-19 10:36:12 (12448): Setting Network Configuration for NAT.
2025-04-19 10:36:12 (12448): Enabling VM Network Access.
2025-04-19 10:36:13 (12448): Disabling USB Support for VM.
2025-04-19 10:36:13 (12448): Disabling COM Port Support for VM.
2025-04-19 10:36:13 (12448): Disabling LPT Port Support for VM.
2025-04-19 10:36:14 (12448): Disabling Audio Support for VM.
2025-04-19 10:36:14 (12448): Disabling Clipboard Support for VM.
2025-04-19 10:36:14 (12448): Disabling Drag and Drop Support for VM.
2025-04-19 10:36:14 (12448): Adding storage controller(s) to VM.
2025-04-19 10:36:15 (12448): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 10:36:15 (12448): Adding VirtualBox Guest Additions to VM.
2025-04-19 10:36:15 (12448): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 10:36:16 (12448): forwarding host port 56467 to guest port 80
2025-04-19 10:36:16 (12448): Enabling remote desktop for VM.
2025-04-19 10:36:16 (12448): Required extension pack not installed, remote desktop not enabled.
2025-04-19 10:36:16 (12448): Enabling shared directory for VM.
2025-04-19 10:36:17 (12448): Starting VM using VBoxManage interface. (boinc_435ab03e00590e47, slot#10)
2025-04-19 10:36:23 (12448): Successfully started VM. (PID = '2732')
2025-04-19 10:36:23 (12448): Reporting VM Process ID to BOINC.
2025-04-19 10:36:23 (12448): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-19 10:36:23 (12448): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 10:36:23 (12448): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 10:36:23 (12448): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 10:36:23 (12448): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 10:36:23 (12448): Detected: Web Application Enabled (http://localhost:56467)
2025-04-19 10:36:23 (12448): Preference change detected
2025-04-19 10:36:23 (12448): Setting CPU throttle for VM. (100%)
2025-04-19 10:36:24 (12448): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 10:36:25 (12448): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 10:36:25 (12448): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 10:36:29 (12448): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 10:36:29 (12448): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 10:36:29 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 10:36:30 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 10:36:30 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 10:36:30 (12448): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 10:36:30 (12448): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 10:36:38 (12448): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 10:36:38 (12448): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 10:36:51 (12448): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000442 main     Log opened 2025-04-19T10:36:49.686636000Z
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000660 main     OS Product: Linux
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000743 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000818 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000899 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000901 main     Process ID: 1379
2025-04-19 10:36:51 (12448): Guest Log: 00:00:00.000903 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 10:36:52 (12448): Guest Log: 00:00:00.002331 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 10:36:52 (12448): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 10:36:52 (12448): Guest Log: [INFO] Mounting shared directory
2025-04-19 10:36:52 (12448): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 10:36:57 (12448): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 10:36:57 (12448): Guest Log: [INFO] Detected branch: prod
2025-04-19 10:36:57 (12448): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 10:36:57 (12448): Guest Log: Copying input files
2025-04-19 10:36:59 (12448): Guest Log: Copied input files into RunAtlas.
2025-04-19 10:37:00 (12448): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 10:37:00 (12448): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 10:37:00 (12448): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 10:37:00 (12448): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 10:37:01 (12448): Guest Log: 00:00:10.005317 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 286 900 000ns (GuestNow=1 745 051 821 403 775 000 ns GuestLast=1 745 059 009 690 675 000 ns fSetTimeLastLoop=true )
2025-04-19 10:37:10 (12448): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 10:37:10 (12448): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 10:37:10 (12448): Guest Log: 2.6.3.0 1656 0 30020 145031 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 10:37:11 (12448): Guest Log: copied the webapp to /var/www
2025-04-19 10:37:11 (12448): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 10:37:11 (12448): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 10:37:12 (12448): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 10:37:12 (12448): Guest Log:  *** Starting ATLAS job. (PandaID=6607430126 taskID=44075483) ***
2025-04-19 10:59:24 (12448): Guest Log:  *** Job finished ***
2025-04-19 10:59:24 (12448): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:12,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:13,764 | INFO     | [job] queue monitor thread has finished
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:15,786 | INFO     | [data] queue_monitor thread has finished
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:16,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695732950848)>', '<ExcThread(monitor, started 139695077975808)>']
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:16,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:16,845 | INFO     | [monitor] control thread has ended
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,330 | INFO     | all workflow threads have been joined
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,330 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,330 | INFO     | traces error code: 0
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,331 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,484 [wrapper] ==== pilot stdout END ====
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,492 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,499 [wrapper] pilotpid: 6014
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,507 [wrapper] Pilot exit status: 0
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,605 [wrapper] pandaids: 6607430126
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,667 [wrapper] cleanup supervisor_pilot 19060 6015
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,674 [wrapper] Test setup, not cleaning
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,682 [wrapper] apfmon messages muted
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,688 [wrapper] ==== wrapper stdout END ====
2025-04-19 10:59:24 (12448): Guest Log: 2025-04-19 08:59:21,696 [wrapper] ==== wrapper stderr END ====
2025-04-19 10:59:24 (12448): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 10:59:24 (12448): Guest Log:     "exeErrorCode": 65,
2025-04-19 10:59:24 (12448): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wrong ATLAS layout: ATLAS-R3S-2021-03-02-00 *** ***\"",
2025-04-19 10:59:24 (12448): Guest Log:     "pilotErrorCode": 1305,
2025-04-19 10:59:24 (12448): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wro",
2025-04-19 10:59:24 (12448): Guest Log:  *** Listing of results directory ***
2025-04-19 10:59:24 (12448): Guest Log: total 4132
2025-04-19 10:59:24 (12448): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 19 05:48 pilot3.tar.gz
2025-04-19 10:59:24 (12448): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 19 05:52 runpilot2-wrapper.sh
2025-04-19 10:59:24 (12448): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 19 05:52 queuedata.json
2025-04-19 10:59:24 (12448): Guest Log: -rwxr-xr-x. 1 atlas atlas    8904 Apr 19 08:36 init_data.xml
2025-04-19 10:59:24 (12448): Guest Log: -rwxr-xr-x. 1 atlas atlas  508890 Apr 19 08:36 input.tar.gz
2025-04-19 10:59:24 (12448): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 19 08:36 start_atlas.sh
2025-04-19 10:59:24 (12448): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 19 08:36 EVNT.44075481._003044.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 10:59:24 (12448): Guest Log: -rw-r--r--. 1 atlas atlas    2579 Apr 19 08:37 pandaJob.out
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas     424 Apr 19 08:37 setup.sh.local
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas  991300 Apr 19 08:37 agis_schedconf.cvmfs.json
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 19 08:37 agis_ddmendpoints.agis.ALL.json
2025-04-19 10:59:24 (12448): Guest Log: drwx------. 4 atlas atlas    4096 Apr 19 08:38 pilot3
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas    1041 Apr 19 08:56 memory_monitor_summary.json
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas   52947 Apr 19 08:57 log.44075483._078468.job.log.tgz.1
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas      95 Apr 19 08:58 pilot_heartbeat.json
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas   11240 Apr 19 08:59 heartbeat.json
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas    4599 Apr 19 08:59 pilotlog.txt
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas  163779 Apr 19 08:59 log.44075483._078468.job.log.1
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas     188 Apr 19 08:59 output.list
2025-04-19 10:59:24 (12448): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 19 08:59 runtime_log
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas  235520 Apr 19 08:59 result.tar.gz
2025-04-19 10:59:24 (12448): Guest Log: -rw-r--r--. 1 atlas atlas   10755 Apr 19 08:59 runtime_log.err
2025-04-19 10:59:24 (12448): Guest Log: -rw-------. 1 atlas atlas     637 Apr 19 08:59 GmvMDmFJGQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmr8gLDmFAXoSo.diag
2025-04-19 10:59:24 (12448): Guest Log: Looking for outputfile HITS.44075483._078468.pool.root.1
2025-04-19 10:59:24 (12448): Guest Log: No HITS file was produced
2025-04-19 10:59:24 (12448): Guest Log: Successfully finished the ATLAS job!
2025-04-19 10:59:24 (12448): Guest Log: Copying the results back to the shared directory!
2025-04-19 10:59:24 (12448): Guest Log:  *** Contents of shared directory: ***
2025-04-19 10:59:24 (12448): Guest Log: total 221744
2025-04-19 10:59:24 (12448): Guest Log: -rwxrwxrwx. 1 root root 226283293 Apr 19 08:36 ATLAS.root_0
2025-04-19 10:59:24 (12448): Guest Log: -rwxrwxrwx. 1 root root      8904 Apr 19 08:36 init_data.xml
2025-04-19 10:59:24 (12448): Guest Log: -rwxrwxrwx. 1 root root    508890 Apr 19 08:34 input.tar.gz
2025-04-19 10:59:24 (12448): Guest Log: -rwxrwxrwx. 1 root root    235520 Apr 19 08:59 result.tar.gz
2025-04-19 10:59:24 (12448): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 08:34 start_atlas.sh
2025-04-19 10:59:24 (12448): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 10:59:24 (12448): VM Completion File Detected.
2025-04-19 10:59:24 (12448): Powering off VM.
2025-04-19 10:59:25 (12448): Successfully stopped VM.
2025-04-19 10:59:25 (12448): Deregistering VM. (boinc_435ab03e00590e47, slot#10)
2025-04-19 10:59:25 (12448): Removing network bandwidth throttle group from VM.
2025-04-19 10:59:26 (12448): Removing VM from VirtualBox.
10:59:31 (12448): called boinc_finish(0)

</stderr_txt>
]]>

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