Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:46:36 (10010): wrapper (7.7.26015): starting
03:46:36 (10010): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 03:46:36] Arguments: --nthreads 12
[2025-04-19 03:46:36] Threads: 12
[2025-04-19 03:46:36] Checking for CVMFS
[2025-04-19 03:46:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 03:46:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 03:46:36] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 03:46:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 03:46:36] 2.11.2.0 20204 374916 165584 145030 2 56 10207145 20275201 1 130560 0 23423603 99.969 7684316 50639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 03:46:36] CVMFS is ok
[2025-04-19 03:46:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 03:46:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 03:46:37] Further information can be found at the LHC@home message board.
[2025-04-19 03:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 03:46:37] Checking for apptainer binary...
[2025-04-19 03:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 03:46:37] Running /usr/bin/apptainer --version
[2025-04-19 03:46:37] apptainer version 1.3.2-1.el7
[2025-04-19 03:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 03:46:38] c-205-28.aglt2.org
[2025-04-19 03:46:38] apptainer works
[2025-04-19 03:46:38] Set ATHENA_PROC_NUMBER=12
[2025-04-19 03:46:38] Set ATHENA_CORE_NUMBER=12
[2025-04-19 03:46:38] Starting ATLAS job with PandaID=6607299296
[2025-04-19 03:46:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:11:22 (9835): wrapper (7.7.26015): starting
05:11:22 (9835): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 05:11:22] Arguments: --nthreads 12
[2025-04-19 05:11:22] Threads: 12
[2025-04-19 05:11:22] This job has been restarted, cleaning up previous attempt
[2025-04-19 05:11:22] Checking for CVMFS
[2025-04-19 05:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 05:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 05:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 05:11:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 05:11:22] 2.11.2.0 20204 375001 166256 145031 1 38 10228462 20275201 1 130560 0 23493541 99.970 7688011 50626 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-19 05:11:22] CVMFS is ok
[2025-04-19 05:11:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 05:11:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 05:11:22] Further information can be found at the LHC@home message board.
[2025-04-19 05:11:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 05:11:22] Checking for apptainer binary...
[2025-04-19 05:11:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 05:11:22] Running /usr/bin/apptainer --version
[2025-04-19 05:11:22] apptainer version 1.3.2-1.el7
[2025-04-19 05:11:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 05:11:24] c-205-28.aglt2.org
[2025-04-19 05:11:24] apptainer works
[2025-04-19 05:11:24] Set ATHENA_PROC_NUMBER=12
[2025-04-19 05:11:24] Set ATHENA_CORE_NUMBER=12
[2025-04-19 05:11:24] Starting ATLAS job with PandaID=6607299296
[2025-04-19 05:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 06:36:48]  *** The last 200 lines of the pilot log: ***
[2025-04-19 06:36:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 06:36:48]  is_altstaged=None
[2025-04-19 06:36:48]  is_tar=False
[2025-04-19 06:36:48]  lfn=log.44075483._077981.job.log.tgz.1
[2025-04-19 06:36:48]  mtime=0
[2025-04-19 06:36:48]  protocol_id=None
[2025-04-19 06:36:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 06:36:48]  replicas=None
[2025-04-19 06:36:48]  scope=mc23_13p6TeV
[2025-04-19 06:36:48]  status=None
[2025-04-19 06:36:48]  status_code=0
[2025-04-19 06:36:48]  storage_token=
[2025-04-19 06:36:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607299296/log.44075483._077981.job.log.tgz.1
[2025-04-19 06:36:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/3c/log.44075483._077981.job.log.tgz.1
[2025-04-19 06:36:48]  workdir=None
[2025-04-19 06:36:48] ]
[2025-04-19 06:36:48] 2025-04-19 10:36:20,930 | INFO     | transferring file log.44075483._077981.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607299296/log.44075483._077981.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 06:36:48] 2025-04-19 10:36:20,931 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607299296/log.44075483._077981.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._077981.job
[2025-04-19 06:36:48] 2025-04-19 10:36:20,953 | INFO     | adding to output.list: log.44075483._077981.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/3c/log.44075483._077981.job.log.tg
[2025-04-19 06:36:48] 2025-04-19 10:36:20,954 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 06:36:48] 2025-04-19 10:36:20,954 | INFO     | summary of transferred files:
[2025-04-19 06:36:48] 2025-04-19 10:36:20,954 | INFO     |  -- lfn=log.44075483._077981.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 06:36:48] 2025-04-19 10:36:20,955 | INFO     | stage-out finished correctly
[2025-04-19 06:36:48] 2025-04-19 10:36:21,042 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 06:36:48] 2025-04-19 10:36:22,516 | INFO     | monitor loop #380: job 0:6607299296 is in state 'finished'
[2025-04-19 06:36:48] 2025-04-19 10:36:22,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:36:48] 2025-04-19 10:36:23,606 | INFO     | job 6607299296 has state=finished
[2025-04-19 06:36:48] 2025-04-19 10:36:23,606 | INFO     | preparing for final server update for job 6607299296 in state='finished'
[2025-04-19 06:36:48] 2025-04-19 10:36:23,607 | INFO     | this job has now completed (state=finished)
[2025-04-19 06:36:48] 2025-04-19 10:36:23,607 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 06:36:48] 2025-04-19 10:36:23,607 | INFO     | log transfer has been attempted: DONE
[2025-04-19 06:36:48] 2025-04-19 10:36:23,607 | INFO     | job 6607299296 has finished - writing final server update
[2025-04-19 06:36:48] 2025-04-19 10:36:23,608 | INFO     | total number of processed events: 400 (read)
[2025-04-19 06:36:48] 2025-04-19 10:36:23,609 | INFO     | executing command: lscpu
[2025-04-19 06:36:48] 2025-04-19 10:36:23,637 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 06:36:48] 2025-04-19 10:36:25,020 | INFO     | monitor loop #381: job 0:6607299296 is in state 'finished'
[2025-04-19 06:36:48] 2025-04-19 10:36:25,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:36:48] 2025-04-19 10:36:27,523 | INFO     | monitor loop #382: job 0:6607299296 is in state 'finished'
[2025-04-19 06:36:48] 2025-04-19 10:36:27,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,382 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 06:36:48] 2025-04-19 10:36:28,382 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607299296/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,383 | INFO     | extracted standard info from prmon json
[2025-04-19 06:36:48] 2025-04-19 10:36:28,383 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 06:36:48] 2025-04-19 10:36:28,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 06:36:48] 2025-04-19 10:36:28,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 06:36:48] 2025-04-19 10:36:28,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 06:36:48] 2025-04-19 10:36:28,386 | INFO     | fitting pss+swap vs Time
[2025-04-19 06:36:48] 2025-04-19 10:36:28,386 | INFO     | sum of square deviations: 136095575.0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | sum of deviations: 27680401575.000004
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | mean x: 1745056518.5
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | mean y: 2542540.8157894737
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | -- intersect: -354923510000.947
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | intersect: -354923510000.947
[2025-04-19 06:36:48] 2025-04-19 10:36:28,387 | INFO     | chi2: 2.841213667583766
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | -- intersect: -354923510000.947
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | current memory leak: 203.39 B/s (using 76 data points, chi2=2.84)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | ..............................
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | . Timing measurements:
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | . get job = 0 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | . initial setup = 1 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,388 | INFO     | . payload setup = 7 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,389 | INFO     | . stage-in = 0 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,389 | INFO     | . payload execution = 5056 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,389 | INFO     | . stage-out = 0 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,389 | INFO     | . log creation = 0 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,389 | INFO     | ..............................
[2025-04-19 06:36:48] 2025-04-19 10:36:28,944 | INFO     | 
[2025-04-19 06:36:48] 2025-04-19 10:36:28,944 | INFO     | job summary report
[2025-04-19 06:36:48] 2025-04-19 10:36:28,944 | INFO     | --------------------------------------------------
[2025-04-19 06:36:48] 2025-04-19 10:36:28,944 | INFO     | PanDA job id: 6607299296
[2025-04-19 06:36:48] 2025-04-19 10:36:28,944 | INFO     | task id: 44075483
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | errors: (none)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | pilot state: finished 
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | transexitcode: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | exeerrorcode: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,945 | INFO     | exeerrordiag: 
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | exitcode: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | exitmsg: OK
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | cpuconsumptiontime: 48239 s
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | nevents: 400
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | neventsw: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | pid: 19806
[2025-04-19 06:36:48] 2025-04-19 10:36:28,946 | INFO     | pgrp: 19806
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | corecount: 12
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | event service: False
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | sizes: {0: 2426818, 5: 2427024, 11: 2427080, 5067: 2453230, 5068: 2462227, 5076: 2462341}
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | --------------------------------------------------
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | 
[2025-04-19 06:36:48] 2025-04-19 10:36:28,947 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 06:36:48] 2025-04-19 10:36:28,972 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,974 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,975 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,976 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,976 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 06:36:48] 2025-04-19 10:36:28,976 | INFO     | job 6607299296 has completed (purged errors)
[2025-04-19 06:36:48] 2025-04-19 10:36:28,976 | INFO     | overall cleanup function is called
[2025-04-19 06:36:48] 2025-04-19 10:36:29,984 | INFO     | --- collectZombieJob: --- 10, [19806]
[2025-04-19 06:36:48] 2025-04-19 10:36:29,984 | INFO     | zombie collector waiting for pid 19806
[2025-04-19 06:36:48] 2025-04-19 10:36:29,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 06:36:48] 2025-04-19 10:36:29,987 | INFO     | collected zombie processes
[2025-04-19 06:36:48] 2025-04-19 10:36:29,987 | INFO     | will attempt to kill all subprocesses of pid=19806
[2025-04-19 06:36:48] 2025-04-19 10:36:30,082 | INFO     | process IDs to be killed: [19806] (in reverse order)
[2025-04-19 06:36:48] 2025-04-19 10:36:30,137 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 06:36:48] 2025-04-19 10:36:30,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 06:36:48] 2025-04-19 10:36:30,139 | INFO     | did not find any defunct processes belonging to 19806
[2025-04-19 06:36:48] 2025-04-19 10:36:30,141 | INFO     | did not find any defunct processes belonging to 19806
[2025-04-19 06:36:48] 2025-04-19 10:36:30,142 | INFO     | ready for new job
[2025-04-19 06:36:48] 2025-04-19 10:36:30,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 06:36:48] 2025-04-19 10:36:30,143 | INFO     | **************************************
[2025-04-19 06:36:48] 2025-04-19 10:36:30,143 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 06:36:48] 2025-04-19 10:36:30,143 | INFO     | **************************************
[2025-04-19 06:36:48] 2025-04-19 10:36:30,143 | INFO     | 
[2025-04-19 06:36:48] 2025-04-19 10:36:30,144 | INFO     | architecture information:
[2025-04-19 06:36:48] 2025-04-19 10:36:30,144 | INFO     | executing command: cat /etc/os-release
[2025-04-19 06:36:48] 2025-04-19 10:36:30,160 | INFO     | cat /etc/os-release:
[2025-04-19 06:36:48] NAME="CentOS Linux"
[2025-04-19 06:36:48] VERSION="7 (Core)"
[2025-04-19 06:36:48] ID="centos"
[2025-04-19 06:36:48] ID_LIKE="rhel fedora"
[2025-04-19 06:36:48] VERSION_ID="7"
[2025-04-19 06:36:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 06:36:48] ANSI_COLOR="0;31"
[2025-04-19 06:36:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 06:36:48] HOME_URL="https://www.centos.org/"
[2025-04-19 06:36:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 06:36:48] 
[2025-04-19 06:36:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 06:36:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 06:36:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 06:36:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 06:36:48] 
[2025-04-19 06:36:48] 2025-04-19 10:36:30,160 | INFO     | **************************************
[2025-04-19 06:36:48] 2025-04-19 10:36:30,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 06:36:48] 2025-04-19 10:36:30,681 | INFO     | sufficient remaining disk space (29387390976 B)
[2025-04-19 06:36:48] 2025-04-19 10:36:30,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 06:36:48] 2025-04-19 10:36:30,682 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 06:36:48] 2025-04-19 10:36:30,682 | INFO     | update_server=False
[2025-04-19 06:36:48] 2025-04-19 10:36:30,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 06:36:48] 2025-04-19 10:36:30,682 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 06:36:48] 2025-04-19 10:36:30,683 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 06:36:48] 2025-04-19 10:36:30,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 06:36:48] 2025-04-19 10:36:30,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 06:36:48] 2025-04-19 10:36:30,726 | INFO     | all job control threads have been joined
[2025-04-19 06:36:48] 2025-04-19 10:36:30,843 | INFO     | all payload control threads have been joined
[2025-04-19 06:36:48] 2025-04-19 10:36:30,952 | INFO     | all data control threads have been joined
[2025-04-19 06:36:48] 2025-04-19 10:36:31,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 06:36:48] 2025-04-19 10:36:31,031 | INFO     | aborting loop
[2025-04-19 06:36:48] 2025-04-19 10:36:31,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 06:36:48] 2025-04-19 10:36:31,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 06:36:48] 2025-04-19 10:36:31,687 | INFO     | [job] retrieve thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:31,732 | INFO     | [job] control thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:31,830 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:31,832 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:31,845 | INFO     | [payload] control thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:31,957 | INFO     | [data] control thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,036 | INFO     | [job] job monitor thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,201 | INFO     | [payload] validate_post thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,435 | INFO     | [data] copytool_in thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,636 | INFO     | [payload] failed_post thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,922 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:32,951 | INFO     | [job] validate thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:33,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 06:36:48] 2025-04-19 10:36:33,560 | INFO     | [data] copytool_out thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:34,489 | INFO     | [job] queue monitor thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:35,642 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:40,824 | INFO     | job.realtimelogging is not enabled
[2025-04-19 06:36:48] 2025-04-19 10:36:41,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 06:36:48] 2025-04-19 10:36:42,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140270778259264)>', '<ExcThread(monitor, started 140270033151744)>']
[2025-04-19 06:36:48] 2025-04-19 10:36:43,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 06:36:48] 2025-04-19 10:36:43,745 | INFO     | [monitor] control thread has ended
[2025-04-19 06:36:48] 2025-04-19 10:36:47,974 | INFO     | all workflow threads have been joined
[2025-04-19 06:36:48] 2025-04-19 10:36:47,975 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 06:36:48] 2025-04-19 10:36:47,975 | INFO     | traces error code: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:47,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 06:36:48] 2025-04-19 10:36:48,063 [wrapper] ==== pilot stdout END ====
[2025-04-19 06:36:48] 2025-04-19 10:36:48,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 06:36:48] 2025-04-19 10:36:48,071 [wrapper] pilotpid: 13462
[2025-04-19 06:36:48] 2025-04-19 10:36:48,075 [wrapper] Pilot exit status: 0
[2025-04-19 06:36:48] 2025-04-19 10:36:48,091 [wrapper] pandaids: 6607299296 6607299296
[2025-04-19 06:36:48] 2025-04-19 10:36:48,129 [wrapper] cleanup supervisor_pilot  7059 13463
[2025-04-19 06:36:48] 2025-04-19 10:36:48,133 [wrapper] Test setup, not cleaning
[2025-04-19 06:36:48] 2025-04-19 10:36:48,137 [wrapper] apfmon messages muted
[2025-04-19 06:36:48] 2025-04-19 10:36:48,141 [wrapper] ==== wrapper stdout END ====
[2025-04-19 06:36:48] 2025-04-19 10:36:48,145 [wrapper] ==== wrapper stderr END ====
[2025-04-19 06:36:48]  *** Error codes and diagnostics ***
[2025-04-19 06:36:48]     "exeErrorCode": 0,
[2025-04-19 06:36:48]     "exeErrorDiag": "",
[2025-04-19 06:36:48]     "pilotErrorCode": 0,
[2025-04-19 06:36:48]     "pilotErrorDiag": "",
[2025-04-19 06:36:48]  *** Listing of results directory ***
[2025-04-19 06:36:48] total 641376
[2025-04-19 06:36:48] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas    495897 Apr 19 00:54 pilot3.tar.gz
[2025-04-19 06:36:48] -rwx------ 1 boincer umatlas     37140 Apr 19 00:58 runpilot2-wrapper.sh
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas      5111 Apr 19 00:58 queuedata.json
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas       100 Apr 19 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 06:36:48] -rwxr-xr-x 1 boincer umatlas      7986 Apr 19 03:46 run_atlas
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas       105 Apr 19 03:46 job.xml
[2025-04-19 06:36:48] -rw-r--r-- 3 boincer umatlas 226104844 Apr 19 03:46 EVNT.44075481._003027.pool.root.1
[2025-04-19 06:36:48] -rw-r--r-- 3 boincer umatlas 226104844 Apr 19 03:46 ATLAS.root_0
[2025-04-19 06:36:48] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 03:46 start_atlas.sh
[2025-04-19 06:36:48] drwxrwx--x 2 boincer umatlas      4096 Apr 19 03:46 shared
[2025-04-19 06:36:48] -rw-r--r-- 2 boincer umatlas    508883 Apr 19 03:46 input.tar.gz
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas         0 Apr 19 03:46 boinc_lockfile
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas   1618536 Apr 19 03:46 agis_ddmendpoints.agis.ALL.json
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas      2576 Apr 19 05:11 pandaJob.out
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas       424 Apr 19 05:11 setup.sh.local
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas    991300 Apr 19 05:11 agis_schedconf.cvmfs.json
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas      5867 Apr 19 06:28 init_data.xml
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas        96 Apr 19 06:35 pilot_heartbeat.json
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas 199027315 Apr 19 06:35 HITS.44075483._077981.pool.root.1
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas      1046 Apr 19 06:36 memory_monitor_summary.json
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas    351019 Apr 19 06:36 log.44075483._077981.job.log.tgz.1
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas        27 Apr 19 06:36 wrapper_checkpoint.txt
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas       529 Apr 19 06:36 boinc_task_state.xml
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas      7749 Apr 19 06:36 heartbeat.json
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas      4548 Apr 19 06:36 pilotlog.txt
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas    480443 Apr 19 06:36 log.44075483._077981.job.log.1
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas       357 Apr 19 06:36 output.list
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas       620 Apr 19 06:36 runtime_log
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas    849920 Apr 19 06:36 result.tar.gz
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas     11100 Apr 19 06:36 runtime_log.err
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas       784 Apr 19 06:36 3UsLDmOSFQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDms1gLDms2HhDm.diag
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 06:36 boinc_mmap_file
[2025-04-19 06:36:48] -rw-r--r-- 1 boincer umatlas     23477 Apr 19 06:36 stderr.txt
[2025-04-19 06:36:48] HITS file was successfully produced:
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas 199027315 Apr 19 06:35 shared/HITS.pool.root.1
[2025-04-19 06:36:48]  *** Contents of shared directory: ***
[2025-04-19 06:36:48] total 416528
[2025-04-19 06:36:48] -rw-r--r-- 3 boincer umatlas 226104844 Apr 19 03:46 ATLAS.root_0
[2025-04-19 06:36:48] -rw-r--r-- 2 boincer umatlas     17569 Apr 19 03:46 start_atlas.sh
[2025-04-19 06:36:48] -rw-r--r-- 2 boincer umatlas    508883 Apr 19 03:46 input.tar.gz
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas 199027315 Apr 19 06:35 HITS.pool.root.1
[2025-04-19 06:36:48] -rw------- 1 boincer umatlas    849920 Apr 19 06:36 result.tar.gz
06:36:49 (9835): run_atlas exited; CPU time 48219.171737
06:36:49 (9835): called boinc_finish(0)

</stderr_txt>
]]>

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