Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:40:53 (3872953): wrapper (7.7.26015): starting
11:40:53 (3872953): wrapper: running run_atlas (--nthreads 12)
[2025-04-19 11:40:53] Arguments: --nthreads 12
[2025-04-19 11:40:53] Threads: 12
[2025-04-19 11:40:53] Checking for CVMFS
[2025-04-19 11:40:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 11:40:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 11:40:53] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 11:40:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 11:40:54] 2.12.7.0 2534634 20315 265312 145033 0 187 31334216 46080001 6174 130560 0 200320350 99.936 37301501 4491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-04-19 11:40:54] CVMFS is ok
[2025-04-19 11:40:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 11:40:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 11:40:54] Further information can be found at the LHC@home message board.
[2025-04-19 11:40:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 11:40:54] Checking for apptainer binary...
[2025-04-19 11:40:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 11:40:54] Running /usr/bin/apptainer --version
[2025-04-19 11:40:54] apptainer version 1.4.0-1.el9
[2025-04-19 11:40:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 11:40:54] mff2103.farm.particle.cz
[2025-04-19 11:40:54] apptainer works
[2025-04-19 11:40:54] Set ATHENA_PROC_NUMBER=12
[2025-04-19 11:40:54] Set ATHENA_CORE_NUMBER=12
[2025-04-19 11:40:54] Starting ATLAS job with PandaID=6606213308
[2025-04-19 11:40:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 12:41:14]  *** The last 200 lines of the pilot log: ***
[2025-04-19 12:41:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 12:41:14]  is_altstaged=None
[2025-04-19 12:41:14]  is_tar=False
[2025-04-19 12:41:14]  lfn=log.44075483._065830.job.log.tgz.1
[2025-04-19 12:41:14]  mtime=0
[2025-04-19 12:41:14]  protocol_id=None
[2025-04-19 12:41:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 12:41:14]  replicas=None
[2025-04-19 12:41:14]  scope=mc23_13p6TeV
[2025-04-19 12:41:14]  status=None
[2025-04-19 12:41:14]  status_code=0
[2025-04-19 12:41:14]  storage_token=
[2025-04-19 12:41:14]  surl=/scratch/.boinc/slots/0/PanDA_Pilot-6606213308/log.44075483._065830.job.log.tgz.1
[2025-04-19 12:41:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/b7/log.44075483._065830.job.log.tgz.1
[2025-04-19 12:41:14]  workdir=None
[2025-04-19 12:41:14] ]
[2025-04-19 12:41:14] 2025-04-19 10:40:54,673 | INFO     | transferring file log.44075483._065830.job.log.tgz.1 from /scratch/.boinc/slots/0/PanDA_Pilot-6606213308/log.44075483._065830.job.log.tgz.1 to /scratch/.boinc/slot
[2025-04-19 12:41:14] 2025-04-19 10:40:54,674 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/0/PanDA_Pilot-6606213308/log.44075483._065830.job.log.tgz.1 /scratch/.boinc/slots/0/log.44075483._065830.j
[2025-04-19 12:41:14] 2025-04-19 10:40:54,698 | INFO     | adding to output.list: log.44075483._065830.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/b7/log.44075483._065830.job.log.tg
[2025-04-19 12:41:14] 2025-04-19 10:40:54,699 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 12:41:14] 2025-04-19 10:40:54,700 | INFO     | summary of transferred files:
[2025-04-19 12:41:14] 2025-04-19 10:40:54,700 | INFO     |  -- lfn=log.44075483._065830.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 12:41:14] 2025-04-19 10:40:54,700 | INFO     | stage-out finished correctly
[2025-04-19 12:41:14] 2025-04-19 10:40:54,800 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 12:41:14] 2025-04-19 10:40:54,895 | INFO     | job 6606213308 has state=finished
[2025-04-19 12:41:14] 2025-04-19 10:40:54,896 | INFO     | preparing for final server update for job 6606213308 in state='finished'
[2025-04-19 12:41:14] 2025-04-19 10:40:54,897 | INFO     | this job has now completed (state=finished)
[2025-04-19 12:41:14] 2025-04-19 10:40:54,897 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 12:41:14] 2025-04-19 10:40:54,897 | INFO     | log transfer has been attempted: DONE
[2025-04-19 12:41:14] 2025-04-19 10:40:54,897 | INFO     | job 6606213308 has finished - writing final server update
[2025-04-19 12:41:14] 2025-04-19 10:40:54,898 | INFO     | total number of processed events: 400 (read)
[2025-04-19 12:41:14] 2025-04-19 10:40:54,906 | INFO     | executing command: lscpu
[2025-04-19 12:41:14] 2025-04-19 10:40:54,997 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 12:41:14] 2025-04-19 10:40:55,015 | INFO     | number of running child processes to parent process 3886382: 1
[2025-04-19 12:41:14] 2025-04-19 10:40:55,016 | INFO     | maximum number of monitored processes: 6
[2025-04-19 12:41:14] 2025-04-19 10:40:57,518 | INFO     | monitor loop #266: job 0:6606213308 is in state 'finished'
[2025-04-19 12:41:14] 2025-04-19 10:40:57,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 12:41:14] 2025-04-19 10:40:59,984 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 12:41:14] 2025-04-19 10:40:59,985 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6606213308/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 12:41:14] 2025-04-19 10:40:59,985 | INFO     | extracted standard info from prmon json
[2025-04-19 12:41:14] 2025-04-19 10:40:59,986 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 12:41:14] 2025-04-19 10:40:59,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 12:41:14] 2025-04-19 10:40:59,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 12:41:14] 2025-04-19 10:40:59,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 12:41:14] 2025-04-19 10:40:59,988 | INFO     | fitting pss+swap vs Time
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | sum of square deviations: 43584073.0
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | sum of deviations: 14551014176.0
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | mean x: 1745057553.5
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | mean y: 2472385.730769231
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | -- intersect: -582603866377.3853
[2025-04-19 12:41:14] 2025-04-19 10:40:59,989 | INFO     | intersect: -582603866377.3853
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | chi2: 1.7271415113177475
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | -- intersect: -582603866377.3853
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | current memory leak: 333.86 B/s (using 52 data points, chi2=1.73)
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | ..............................
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | . Timing measurements:
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | . get job = 0 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,990 | INFO     | . initial setup = 1 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | . payload setup = 7 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | . stage-in = 0 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | . payload execution = 3564 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | . stage-out = 1 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | . log creation = 0 s
[2025-04-19 12:41:14] 2025-04-19 10:40:59,991 | INFO     | ..............................
[2025-04-19 12:41:14] 2025-04-19 10:41:00,091 | INFO     | 
[2025-04-19 12:41:14] 2025-04-19 10:41:00,091 | INFO     | job summary report
[2025-04-19 12:41:14] 2025-04-19 10:41:00,091 | INFO     | --------------------------------------------------
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | PanDA job id: 6606213308
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | task id: 44075483
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | errors: (none)
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | pilot state: finished 
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | transexitcode: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | exeerrorcode: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | exeerrordiag: 
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | exitcode: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | exitmsg: OK
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | cpuconsumptiontime: 31809 s
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | nevents: 400
[2025-04-19 12:41:14] 2025-04-19 10:41:00,092 | INFO     | neventsw: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | pid: 3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | pgrp: 3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | corecount: 12
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | event service: False
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | sizes: {0: 2426825, 6: 2427031, 11: 2427059, 3572: 2452732, 3575: 2461731, 3580: 2461845}
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | --------------------------------------------------
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | 
[2025-04-19 12:41:14] 2025-04-19 10:41:00,093 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-04-19 12:41:14] 2025-04-19 10:41:00,116 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 12:41:14] 2025-04-19 10:41:00,118 | INFO     | job 6606213308 has completed (purged errors)
[2025-04-19 12:41:14] 2025-04-19 10:41:00,119 | INFO     | overall cleanup function is called
[2025-04-19 12:41:14] 2025-04-19 10:41:01,127 | INFO     | --- collectZombieJob: --- 10, [3886382]
[2025-04-19 12:41:14] 2025-04-19 10:41:01,128 | INFO     | zombie collector waiting for pid 3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:01,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 12:41:14] 2025-04-19 10:41:01,128 | INFO     | collected zombie processes
[2025-04-19 12:41:14] 2025-04-19 10:41:01,128 | INFO     | will attempt to kill all subprocesses of pid=3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:01,473 | INFO     | process IDs to be killed: [3886382] (in reverse order)
[2025-04-19 12:41:14] 2025-04-19 10:41:01,577 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 12:41:14] 2025-04-19 10:41:01,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 12:41:14] 2025-04-19 10:41:01,588 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-04-19 12:41:14] 2025-04-19 10:41:01,589 | INFO     | did not find any defunct processes belonging to 3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:01,599 | INFO     | did not find any defunct processes belonging to 3886382
[2025-04-19 12:41:14] 2025-04-19 10:41:01,599 | INFO     | ready for new job
[2025-04-19 12:41:14] 2025-04-19 10:41:01,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 12:41:14] 2025-04-19 10:41:01,600 | INFO     | **************************************
[2025-04-19 12:41:14] 2025-04-19 10:41:01,601 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 12:41:14] 2025-04-19 10:41:01,601 | INFO     | **************************************
[2025-04-19 12:41:14] 2025-04-19 10:41:01,601 | INFO     | 
[2025-04-19 12:41:14] 2025-04-19 10:41:01,607 | INFO     | architecture information:
[2025-04-19 12:41:14] 2025-04-19 10:41:01,607 | INFO     | executing command: cat /etc/os-release
[2025-04-19 12:41:14] 2025-04-19 10:41:01,625 | INFO     | cat /etc/os-release:
[2025-04-19 12:41:14] NAME="CentOS Linux"
[2025-04-19 12:41:14] VERSION="7 (Core)"
[2025-04-19 12:41:14] ID="centos"
[2025-04-19 12:41:14] ID_LIKE="rhel fedora"
[2025-04-19 12:41:14] VERSION_ID="7"
[2025-04-19 12:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 12:41:14] ANSI_COLOR="0;31"
[2025-04-19 12:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 12:41:14] HOME_URL="https://www.centos.org/"
[2025-04-19 12:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 12:41:14] 
[2025-04-19 12:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 12:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 12:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 12:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 12:41:14] 
[2025-04-19 12:41:14] 2025-04-19 10:41:01,625 | INFO     | **************************************
[2025-04-19 12:41:14] 2025-04-19 10:41:02,128 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-04-19 12:41:14] 2025-04-19 10:41:02,144 | INFO     | sufficient remaining disk space (1681197629440 B)
[2025-04-19 12:41:14] 2025-04-19 10:41:02,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | INFO     | update_server=False
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 12:41:14] 2025-04-19 10:41:02,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 12:41:14] 2025-04-19 10:41:02,398 | INFO     | all job control threads have been joined
[2025-04-19 12:41:14] 2025-04-19 10:41:02,529 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 12:41:14] 2025-04-19 10:41:02,584 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 12:41:14] 2025-04-19 10:41:02,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 12:41:14] 2025-04-19 10:41:02,585 | INFO     | will abort loop
[2025-04-19 12:41:14] 2025-04-19 10:41:02,596 | INFO     | all payload control threads have been joined
[2025-04-19 12:41:14] 2025-04-19 10:41:02,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 12:41:14] 2025-04-19 10:41:03,150 | INFO     | [job] retrieve thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,151 | INFO     | all data control threads have been joined
[2025-04-19 12:41:14] 2025-04-19 10:41:03,260 | INFO     | [payload] failed_post thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,403 | INFO     | [job] control thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,534 | INFO     | [data] copytool_in thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,586 | INFO     | [job] job monitor thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,601 | INFO     | [payload] control thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,636 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:03,713 | INFO     | [job] validate thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,018 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,019 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,156 | INFO     | [data] control thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,242 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,419 | INFO     | [payload] validate_post thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:04,814 | INFO     | [data] copytool_out thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:05,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 12:41:14] 2025-04-19 10:41:05,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 12:41:14] 2025-04-19 10:41:06,107 | INFO     | [job] queue monitor thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:09,408 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 12:41:14] 2025-04-19 10:41:09,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769973561152)>', '<ExcThread(monitor, started 139769468135168)>']
[2025-04-19 12:41:14] 2025-04-19 10:41:10,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 12:41:14] 2025-04-19 10:41:10,186 | INFO     | [monitor] control thread has ended
[2025-04-19 12:41:14] 2025-04-19 10:41:14,685 | INFO     | all workflow threads have been joined
[2025-04-19 12:41:14] 2025-04-19 10:41:14,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 12:41:14] 2025-04-19 10:41:14,686 | INFO     | traces error code: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:14,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 12:41:14] 2025-04-19 10:41:14,808 [wrapper] ==== pilot stdout END ====
[2025-04-19 12:41:14] 2025-04-19 10:41:14,814 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 12:41:14] 2025-04-19 10:41:14,817 [wrapper] pilotpid: 3877005
[2025-04-19 12:41:14] 2025-04-19 10:41:14,820 [wrapper] Pilot exit status: 0
[2025-04-19 12:41:14] 2025-04-19 10:41:14,831 [wrapper] pandaids: 6606213308
[2025-04-19 12:41:14] 2025-04-19 10:41:14,907 [wrapper] cleanup supervisor_pilot 4072017 3877006
[2025-04-19 12:41:14] 2025-04-19 10:41:14,910 [wrapper] Test setup, not cleaning
[2025-04-19 12:41:14] 2025-04-19 10:41:14,913 [wrapper] apfmon messages muted
[2025-04-19 12:41:14] 2025-04-19 10:41:14,916 [wrapper] ==== wrapper stdout END ====
[2025-04-19 12:41:14] 2025-04-19 10:41:14,919 [wrapper] ==== wrapper stderr END ====
[2025-04-19 12:41:14]  *** Error codes and diagnostics ***
[2025-04-19 12:41:14]     "exeErrorCode": 0,
[2025-04-19 12:41:14]     "exeErrorDiag": "",
[2025-04-19 12:41:14]     "pilotErrorCode": 0,
[2025-04-19 12:41:14]     "pilotErrorDiag": "",
[2025-04-19 12:41:14]  *** Listing of results directory ***
[2025-04-19 12:41:15] total 407392
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc    495897 Apr 18 08:56 pilot3.tar.gz
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc      5111 Apr 18 09:04 queuedata.json
[2025-04-19 12:41:15] -rwx------ 1 boinc boinc     37140 Apr 18 09:05 runpilot2-wrapper.sh
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc       100 Apr 19 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 12:41:15] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 11:40 run_atlas
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc       105 Apr 19 11:40 job.xml
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc      6654 Apr 19 11:40 init_data.xml
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc 221341960 Apr 19 11:40 EVNT.44075481._002558.pool.root.1
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc     17569 Apr 19 11:40 start_atlas.sh
[2025-04-19 12:41:15] drwxrwx--x 2 boinc boinc      4096 Apr 19 11:40 shared
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc    508895 Apr 19 11:40 input.tar.gz
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc         0 Apr 19 11:40 boinc_lockfile
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc      2579 Apr 19 11:40 pandaJob.out
[2025-04-19 12:41:15] -rw------- 1 boinc boinc       424 Apr 19 11:40 setup.sh.local
[2025-04-19 12:41:15] -rw------- 1 boinc boinc    991300 Apr 19 11:41 agis_schedconf.cvmfs.json
[2025-04-19 12:41:15] -rw------- 1 boinc boinc   1618536 Apr 19 11:41 agis_ddmendpoints.agis.ALL.json
[2025-04-19 12:41:15] drwx------ 4 boinc boinc      4096 Apr 19 11:41 pilot3
[2025-04-19 12:41:15] -rw------- 1 boinc boinc        95 Apr 19 12:40 pilot_heartbeat.json
[2025-04-19 12:41:15] -rw------- 1 boinc boinc 190502285 Apr 19 12:40 HITS.44075483._065830.pool.root.1
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc       529 Apr 19 12:40 boinc_task_state.xml
[2025-04-19 12:41:15] -rw------- 1 boinc boinc      1035 Apr 19 12:40 memory_monitor_summary.json
[2025-04-19 12:41:15] -rw------- 1 boinc boinc    361199 Apr 19 12:40 log.44075483._065830.job.log.tgz.1
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc      8192 Apr 19 12:40 boinc_mmap_file
[2025-04-19 12:41:15] -rw------- 1 boinc boinc      7697 Apr 19 12:40 heartbeat.json
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc        27 Apr 19 12:41 wrapper_checkpoint.txt
[2025-04-19 12:41:15] -rw------- 1 boinc boinc      4665 Apr 19 12:41 pilotlog.txt
[2025-04-19 12:41:15] -rw------- 1 boinc boinc    364070 Apr 19 12:41 log.44075483._065830.job.log.1
[2025-04-19 12:41:15] -rw------- 1 boinc boinc       357 Apr 19 12:41 output.list
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc       620 Apr 19 12:41 runtime_log
[2025-04-19 12:41:15] -rw------- 1 boinc boinc    747520 Apr 19 12:41 result.tar.gz
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc     11078 Apr 19 12:41 runtime_log.err
[2025-04-19 12:41:15] -rw------- 1 boinc boinc       662 Apr 19 12:41 3qNODmQyuP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmigeLDmtsOVJm.diag
[2025-04-19 12:41:15] -rw-r--r-- 1 boinc boinc     21319 Apr 19 12:41 stderr.txt
[2025-04-19 12:41:15] HITS file was successfully produced:
[2025-04-19 12:41:15] -rw------- 1 boinc boinc 190502285 Apr 19 12:40 shared/HITS.pool.root.1
[2025-04-19 12:41:15]  *** Contents of shared directory: ***
[2025-04-19 12:41:15] total 403456
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc 221341960 Apr 19 11:40 ATLAS.root_0
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc     17569 Apr 19 11:40 start_atlas.sh
[2025-04-19 12:41:15] -rw-r--r-- 2 boinc boinc    508895 Apr 19 11:40 input.tar.gz
[2025-04-19 12:41:15] -rw------- 1 boinc boinc 190502285 Apr 19 12:40 HITS.pool.root.1
[2025-04-19 12:41:15] -rw------- 1 boinc boinc    747520 Apr 19 12:41 result.tar.gz
12:41:16 (3872953): run_atlas exited; CPU time 31884.506386
12:41:16 (3872953): called boinc_finish(0)

</stderr_txt>
]]>

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