Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:18:22 (999447): wrapper (7.7.26015): starting
14:18:22 (999447): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 14:18:22] Arguments: --nthreads 4
[2025-04-19 14:18:22] Threads: 4
[2025-04-19 14:18:22] Checking for CVMFS
[2025-04-19 14:18:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 14:18:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 14:18:22] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 14:18:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 14:18:22] 2.9.2.0 2968 3354 100336 145038 1 56 26040692 36864000 0 130560 0 2544418 99.990 866466 11789 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 14:18:22] CVMFS is ok
[2025-04-19 14:18:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 14:18:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 14:18:22] Further information can be found at the LHC@home message board.
[2025-04-19 14:18:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 14:18:22] Checking for apptainer binary...
[2025-04-19 14:18:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 14:18:22] Running /usr/bin/apptainer --version
[2025-04-19 14:18:22] apptainer version 1.3.6-6.1
[2025-04-19 14:18:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 14:18:22] thA334
[2025-04-19 14:18:22] apptainer works
[2025-04-19 14:18:22] Set ATHENA_PROC_NUMBER=4
[2025-04-19 14:18:22] Set ATHENA_CORE_NUMBER=4
[2025-04-19 14:18:22] Starting ATLAS job with PandaID=6607297585
[2025-04-19 14:18:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 15:37:43]  *** The last 200 lines of the pilot log: ***
[2025-04-19 15:37:43]  workdir=None
[2025-04-19 15:37:43] ]
[2025-04-19 15:37:43] 2025-04-19 13:37:14,341 | INFO     | transferring file log.44075483._077219.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6607297585/log.44075483._077219.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 15:37:43] 2025-04-19 13:37:14,341 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6607297585/log.44075483._077219.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0772
[2025-04-19 15:37:43] 2025-04-19 13:37:14,359 | INFO     | adding to output.list: log.44075483._077219.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/e7/log.44075483._077219.job.log.tg
[2025-04-19 15:37:43] 2025-04-19 13:37:14,359 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 15:37:43] 2025-04-19 13:37:14,359 | INFO     | summary of transferred files:
[2025-04-19 15:37:43] 2025-04-19 13:37:14,359 | INFO     |  -- lfn=log.44075483._077219.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 15:37:43] 2025-04-19 13:37:14,359 | INFO     | stage-out finished correctly
[2025-04-19 15:37:43] 2025-04-19 13:37:15,948 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 15:37:43] 2025-04-19 13:37:18,190 | WARNING  | process 1009765 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 15:37:43] 2025-04-19 13:37:18,190 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607297585/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,190 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607297585/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,191 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2439514 B
[2025-04-19 15:37:43] 2025-04-19 13:37:18,191 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15793 B
[2025-04-19 15:37:43] 2025-04-19 13:37:18,191 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | sufficient remaining disk space (229050941440 B)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6607297585: 2736099 B (within 2537553920 B limit)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6607297585/HITS.44075483._077219.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | total size of present files: 0 B (workdir size: 2736099 B)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,205 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6607297585/HITS.44075483._077219.pool.root.1 since it does not exist
[2025-04-19 15:37:43] 2025-04-19 13:37:18,246 | INFO     | number of running child processes to parent process 1009765: 1
[2025-04-19 15:37:43] 2025-04-19 13:37:18,246 | INFO     | maximum number of monitored processes: 6
[2025-04-19 15:37:43] 2025-04-19 13:37:18,895 | INFO     | job 6607297585 has state=finished
[2025-04-19 15:37:43] 2025-04-19 13:37:18,895 | INFO     | preparing for final server update for job 6607297585 in state='finished'
[2025-04-19 15:37:43] 2025-04-19 13:37:18,895 | INFO     | this job has now completed (state=finished)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,895 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,895 | INFO     | log transfer has been attempted: DONE
[2025-04-19 15:37:43] 2025-04-19 13:37:18,896 | INFO     | job 6607297585 has finished - writing final server update
[2025-04-19 15:37:43] 2025-04-19 13:37:18,896 | INFO     | total number of processed events: 400 (read)
[2025-04-19 15:37:43] 2025-04-19 13:37:18,897 | INFO     | executing command: lscpu
[2025-04-19 15:37:43] 2025-04-19 13:37:18,919 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 15:37:43] 2025-04-19 13:37:20,749 | INFO     | monitor loop #363: job 0:6607297585 is in state 'finished'
[2025-04-19 15:37:43] 2025-04-19 13:37:20,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,252 | INFO     | monitor loop #364: job 0:6607297585 is in state 'finished'
[2025-04-19 15:37:43] 2025-04-19 13:37:23,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 15:37:43] 2025-04-19 13:37:23,498 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6607297585/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,498 | INFO     | extracted standard info from prmon json
[2025-04-19 15:37:43] 2025-04-19 13:37:23,498 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 15:37:43] 2025-04-19 13:37:23,498 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 15:37:43] 2025-04-19 13:37:23,499 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 15:37:43] 2025-04-19 13:37:23,499 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | fitting pss+swap vs Time
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | sum of square deviations: 110960220.0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | sum of deviations: 4610093239.0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | mean x: 1745067572.0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | mean y: 2481456.5070422534
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | -- intersect: -72500296703.76828
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | intersect: -72500296703.76828
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | chi2: 1.1038041322807626
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | -- intersect: -72500296703.76828
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | current memory leak: 41.55 B/s (using 71 data points, chi2=1.10)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | ..............................
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . Timing measurements:
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . get job = 0 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . initial setup = 1 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . payload setup = 4 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . stage-in = 0 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . payload execution = 4701 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,500 | INFO     | . stage-out = 0 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,501 | INFO     | . log creation = 0 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,501 | INFO     | ..............................
[2025-04-19 15:37:43] 2025-04-19 13:37:23,705 | INFO     | PID=1003174 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-19 15:37:43] 2025-04-19 13:37:23,830 | INFO     | 
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | job summary report
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | --------------------------------------------------
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | PanDA job id: 6607297585
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | task id: 44075483
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | errors: (none)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | pilot state: finished 
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | transexitcode: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | exeerrorcode: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | exeerrordiag: 
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | exitcode: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | exitmsg: OK
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | cpuconsumptiontime: 16019 s
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | nevents: 400
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | neventsw: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | pid: 1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | pgrp: 1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | corecount: 4
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | event service: False
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | sizes: {0: 2426827, 4: 2427033, 11: 2427061, 4709: 2453267, 4710: 2462269, 4712: 2462269, 4720: 2462595}
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | --------------------------------------------------
[2025-04-19 15:37:43] 2025-04-19 13:37:23,831 | INFO     | 
[2025-04-19 15:37:43] 2025-04-19 13:37:23,832 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 15:37:43] 2025-04-19 13:37:23,854 | INFO     | job 6607297585 has completed (purged errors)
[2025-04-19 15:37:43] 2025-04-19 13:37:23,854 | INFO     | overall cleanup function is called
[2025-04-19 15:37:43] 2025-04-19 13:37:24,860 | INFO     | --- collectZombieJob: --- 10, [1009765]
[2025-04-19 15:37:43] 2025-04-19 13:37:24,861 | INFO     | zombie collector waiting for pid 1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:24,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 15:37:43] 2025-04-19 13:37:24,861 | INFO     | collected zombie processes
[2025-04-19 15:37:43] 2025-04-19 13:37:24,861 | INFO     | will attempt to kill all subprocesses of pid=1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:24,906 | INFO     | process IDs to be killed: [1009765] (in reverse order)
[2025-04-19 15:37:43] 2025-04-19 13:37:24,939 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 15:37:43] 2025-04-19 13:37:24,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 15:37:43] 2025-04-19 13:37:24,941 | INFO     | did not find any defunct processes belonging to 1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:24,942 | INFO     | did not find any defunct processes belonging to 1009765
[2025-04-19 15:37:43] 2025-04-19 13:37:24,942 | INFO     | ready for new job
[2025-04-19 15:37:43] 2025-04-19 13:37:24,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | **************************************
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | **************************************
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | 
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | architecture information:
[2025-04-19 15:37:43] 2025-04-19 13:37:24,943 | INFO     | executing command: cat /etc/os-release
[2025-04-19 15:37:43] 2025-04-19 13:37:24,957 | INFO     | cat /etc/os-release:
[2025-04-19 15:37:43] NAME="CentOS Linux"
[2025-04-19 15:37:43] VERSION="7 (Core)"
[2025-04-19 15:37:43] ID="centos"
[2025-04-19 15:37:43] ID_LIKE="rhel fedora"
[2025-04-19 15:37:43] VERSION_ID="7"
[2025-04-19 15:37:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 15:37:43] ANSI_COLOR="0;31"
[2025-04-19 15:37:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 15:37:43] HOME_URL="https://www.centos.org/"
[2025-04-19 15:37:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 15:37:43] 
[2025-04-19 15:37:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 15:37:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 15:37:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 15:37:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 15:37:43] 
[2025-04-19 15:37:43] 2025-04-19 13:37:24,957 | INFO     | **************************************
[2025-04-19 15:37:43] 2025-04-19 13:37:25,460 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | INFO     | sufficient remaining disk space (229054087168 B)
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | INFO     | update_server=False
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:37:43] 2025-04-19 13:37:25,479 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 15:37:43] 2025-04-19 13:37:25,711 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 15:37:43] 2025-04-19 13:37:25,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 15:37:43] 2025-04-19 13:37:25,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 15:37:43] 2025-04-19 13:37:25,756 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 15:37:43] 2025-04-19 13:37:25,756 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 15:37:43] 2025-04-19 13:37:25,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:37:43] 2025-04-19 13:37:25,756 | INFO     | will abort loop
[2025-04-19 15:37:43] 2025-04-19 13:37:25,791 | INFO     | all payload control threads have been joined
[2025-04-19 15:37:43] 2025-04-19 13:37:26,242 | INFO     | all data control threads have been joined
[2025-04-19 15:37:43] 2025-04-19 13:37:26,485 | INFO     | [job] queue monitor thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,485 | INFO     | [job] retrieve thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 15:37:43] 2025-04-19 13:37:26,582 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,591 | INFO     | all job control threads have been joined
[2025-04-19 15:37:43] 2025-04-19 13:37:26,762 | INFO     | [job] job monitor thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,771 | INFO     | [payload] failed_post thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,797 | INFO     | [payload] control thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:26,918 | INFO     | [data] copytool_in thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,248 | INFO     | [data] control thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,318 | INFO     | [payload] validate_post thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,485 | INFO     | [data] copytool_out thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,597 | INFO     | [job] control thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,842 | INFO     | [job] validate thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,930 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:27,984 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:30,506 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:36,256 | INFO     | job.realtimelogging is not enabled
[2025-04-19 15:37:43] 2025-04-19 13:37:37,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 15:37:43] 2025-04-19 13:37:38,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140707852347200)>', '<ExcThread(monitor, started 140707046074112)>']
[2025-04-19 15:37:43] 2025-04-19 13:37:38,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 15:37:43] 2025-04-19 13:37:38,779 | INFO     | [monitor] control thread has ended
[2025-04-19 15:37:43] 2025-04-19 13:37:43,661 | INFO     | all workflow threads have been joined
[2025-04-19 15:37:43] 2025-04-19 13:37:43,661 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 15:37:43] 2025-04-19 13:37:43,662 | INFO     | traces error code: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:43,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 15:37:43] 2025-04-19 13:37:43,730 [wrapper] ==== pilot stdout END ====
[2025-04-19 15:37:43] 2025-04-19 13:37:43,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 15:37:43] 2025-04-19 13:37:43,739 [wrapper] pilotpid: 1003174
[2025-04-19 15:37:43] 2025-04-19 13:37:43,742 [wrapper] Pilot exit status: 0
[2025-04-19 15:37:43] 2025-04-19 13:37:43,754 [wrapper] pandaids: 6607297585
[2025-04-19 15:37:43] 2025-04-19 13:37:43,776 [wrapper] cleanup supervisor_pilot 1021971 1003175
[2025-04-19 15:37:43] 2025-04-19 13:37:43,779 [wrapper] Test setup, not cleaning
[2025-04-19 15:37:43] 2025-04-19 13:37:43,783 [wrapper] apfmon messages muted
[2025-04-19 15:37:43] 2025-04-19 13:37:43,786 [wrapper] ==== wrapper stdout END ====
[2025-04-19 15:37:43] 2025-04-19 13:37:43,790 [wrapper] ==== wrapper stderr END ====
[2025-04-19 15:37:43]  *** Error codes and diagnostics ***
[2025-04-19 15:37:43]     "exeErrorCode": 0,
[2025-04-19 15:37:43]     "exeErrorDiag": "",
[2025-04-19 15:37:43]     "pilotErrorCode": 0,
[2025-04-19 15:37:43]     "pilotErrorDiag": "",
[2025-04-19 15:37:43]  *** Listing of results directory ***
[2025-04-19 15:37:43] total 415884
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc    495897 Apr 19 05:35 pilot3.tar.gz
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc      5111 Apr 19 05:42 queuedata.json
[2025-04-19 15:37:43] -rwx------ 1 boinc boinc     37140 Apr 19 05:43 runpilot2-wrapper.sh
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc       100 Apr 19 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 15:37:43] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 14:18 run_atlas
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc       105 Apr 19 14:18 job.xml
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc 222772660 Apr 19 14:18 EVNT.44075481._002996.pool.root.1
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc      6853 Apr 19 14:18 init_data.xml
[2025-04-19 15:37:43] drwxrwx--x 2 boinc boinc      4096 Apr 19 14:18 shared
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc    508890 Apr 19 14:18 input.tar.gz
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc     17569 Apr 19 14:18 start_atlas.sh
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc         0 Apr 19 14:18 boinc_lockfile
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc      2579 Apr 19 14:18 pandaJob.out
[2025-04-19 15:37:43] -rw------- 1 boinc boinc       424 Apr 19 14:18 setup.sh.local
[2025-04-19 15:37:43] -rw------- 1 boinc boinc    991292 Apr 19 14:18 agis_schedconf.cvmfs.json
[2025-04-19 15:37:43] -rw------- 1 boinc boinc   1618536 Apr 19 14:18 agis_ddmendpoints.agis.ALL.json
[2025-04-19 15:37:43] drwx------ 4 boinc boinc      4096 Apr 19 14:18 pilot3
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc       530 Apr 19 15:36 boinc_task_state.xml
[2025-04-19 15:37:43] -rw------- 1 boinc boinc 197806005 Apr 19 15:36 HITS.44075483._077219.pool.root.1
[2025-04-19 15:37:43] -rw------- 1 boinc boinc        95 Apr 19 15:36 pilot_heartbeat.json
[2025-04-19 15:37:43] -rw------- 1 boinc boinc      1022 Apr 19 15:37 memory_monitor_summary.json
[2025-04-19 15:37:43] -rw------- 1 boinc boinc    243835 Apr 19 15:37 log.44075483._077219.job.log.tgz.1
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc        27 Apr 19 15:37 wrapper_checkpoint.txt
[2025-04-19 15:37:43] -rw------- 1 boinc boinc      7662 Apr 19 15:37 heartbeat.json
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc      8192 Apr 19 15:37 boinc_mmap_file
[2025-04-19 15:37:43] -rw------- 1 boinc boinc      4615 Apr 19 15:37 pilotlog.txt
[2025-04-19 15:37:43] -rw------- 1 boinc boinc    464281 Apr 19 15:37 log.44075483._077219.job.log.1
[2025-04-19 15:37:43] -rw------- 1 boinc boinc       357 Apr 19 15:37 output.list
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc       620 Apr 19 15:37 runtime_log
[2025-04-19 15:37:43] -rw------- 1 boinc boinc    727040 Apr 19 15:37 result.tar.gz
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc     11099 Apr 19 15:37 runtime_log.err
[2025-04-19 15:37:43] -rw------- 1 boinc boinc       658 Apr 19 15:37 IEtLDmpHEQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm5sgLDmwkgUdn.diag
[2025-04-19 15:37:43] -rw-r--r-- 1 boinc boinc     22547 Apr 19 15:37 stderr.txt
[2025-04-19 15:37:43] HITS file was successfully produced:
[2025-04-19 15:37:43] -rw------- 1 boinc boinc 197806005 Apr 19 15:36 shared/HITS.pool.root.1
[2025-04-19 15:37:43]  *** Contents of shared directory: ***
[2025-04-19 15:37:43] total 411964
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc 222772660 Apr 19 14:18 ATLAS.root_0
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc    508890 Apr 19 14:18 input.tar.gz
[2025-04-19 15:37:43] -rw-r--r-- 2 boinc boinc     17569 Apr 19 14:18 start_atlas.sh
[2025-04-19 15:37:43] -rw------- 1 boinc boinc 197806005 Apr 19 15:36 HITS.pool.root.1
[2025-04-19 15:37:43] -rw------- 1 boinc boinc    727040 Apr 19 15:37 result.tar.gz
15:37:45 (999447): run_atlas exited; CPU time 16035.035757
15:37:45 (999447): called boinc_finish(0)

</stderr_txt>
]]>

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