Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 22:35:20 (11508): Detected: vboxwrapper 26206
2025-04-19 22:35:21 (11508): Detected: BOINC client v8.0.2
2025-04-19 22:35:21 (11508): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-19 22:35:21 (11508): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 22:35:22 (11508): Create VM. (boinc_af13ef73e4fb7dfa, slot#1)
2025-04-19 22:35:22 (11508): Setting Memory Size for VM. (4800MB)
2025-04-19 22:35:23 (11508): Setting CPU Count for VM. (8)
2025-04-19 22:35:23 (11508): Setting Chipset Options for VM.
2025-04-19 22:35:23 (11508): Setting Graphics Controller Options for VM.
2025-04-19 22:35:23 (11508): Setting Boot Options for VM.
2025-04-19 22:35:24 (11508): Setting Network Configuration for NAT.
2025-04-19 22:35:24 (11508): Enabling VM Network Access.
2025-04-19 22:35:24 (11508): Disabling USB Support for VM.
2025-04-19 22:35:24 (11508): Disabling COM Port Support for VM.
2025-04-19 22:35:25 (11508): Disabling LPT Port Support for VM.
2025-04-19 22:35:25 (11508): Disabling Audio Support for VM.
2025-04-19 22:35:25 (11508): Disabling Clipboard Support for VM.
2025-04-19 22:35:25 (11508): Disabling Drag and Drop Support for VM.
2025-04-19 22:35:26 (11508): Adding storage controller(s) to VM.
2025-04-19 22:35:26 (11508): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 22:35:26 (11508): Adding VirtualBox Guest Additions to VM.
2025-04-19 22:35:27 (11508): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 22:35:27 (11508): forwarding host port 54932 to guest port 80
2025-04-19 22:35:27 (11508): Enabling remote desktop for VM.
2025-04-19 22:35:27 (11508): Required extension pack not installed, remote desktop not enabled.
2025-04-19 22:35:27 (11508): Enabling shared directory for VM.
2025-04-19 22:35:28 (11508): Starting VM using VBoxManage interface. (boinc_af13ef73e4fb7dfa, slot#1)
2025-04-19 22:35:36 (11508): Successfully started VM. (PID = '11984')
2025-04-19 22:35:36 (11508): Reporting VM Process ID to BOINC.
2025-04-19 22:35:36 (11508): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-19 22:35:36 (11508): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 22:35:36 (11508): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 22:35:36 (11508): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 22:35:36 (11508): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 22:35:36 (11508): Detected: Web Application Enabled (http://localhost:54932)
2025-04-19 22:35:36 (11508): Preference change detected
2025-04-19 22:35:36 (11508): Setting CPU throttle for VM. (40%)
2025-04-19 22:35:36 (11508): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 22:35:38 (11508): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 22:35:38 (11508): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 22:35:44 (11508): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 22:35:44 (11508): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 22:35:44 (11508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 22:35:56 (11508): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 22:35:56 (11508): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 22:36:18 (11508): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000329 main     Log opened 2025-04-19T22:36:16.744601000Z
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000558 main     OS Product: Linux
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000642 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000714 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000784 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000786 main     Process ID: 1398
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.000788 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 22:36:18 (11508): Guest Log: 00:00:00.002933 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 22:36:18 (11508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 22:36:18 (11508): Guest Log: [INFO] Mounting shared directory
2025-04-19 22:36:18 (11508): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 22:36:28 (11508): Guest Log: 00:00:10.007126 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 389 180 956 000ns (GuestNow=1 745 069 787 569 184 000 ns GuestLast=1 745 102 176 750 140 000 ns fSetTimeLastLoop=true )
2025-04-19 22:36:30 (11508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 22:36:30 (11508): Guest Log: [INFO] Detected branch: prod
2025-04-19 22:36:31 (11508): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 22:36:31 (11508): Guest Log: Copying input files
2025-04-19 22:36:37 (11508): Guest Log: Copied input files into RunAtlas.
2025-04-19 22:36:37 (11508): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 22:36:37 (11508): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 22:36:37 (11508): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 22:36:37 (11508): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 22:36:52 (11508): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 22:36:52 (11508): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 22:36:52 (11508): Guest Log: 2.6.3.0 1680 0 32048 145039 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 22:36:54 (11508): Guest Log: copied the webapp to /var/www
2025-04-19 22:36:54 (11508): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 22:36:54 (11508): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 22:36:54 (11508): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 22:36:54 (11508): Guest Log:  *** Starting ATLAS job. (PandaID=6607297428 taskID=44075483) ***
2025-04-20 00:15:42 (11508): Status Report: Elapsed Time: '6000.000000'
2025-04-20 00:15:42 (11508): Status Report: CPU Time: '13525.765625'
2025-04-20 00:41:03 (11508): VM state change detected. (old = 'running', new = 'paused')
2025-04-20 00:41:23 (11508): VM state change detected. (old = 'paused', new = 'running')
2025-04-20 01:56:08 (11508): Status Report: Elapsed Time: '12000.000000'
2025-04-20 01:56:08 (11508): Status Report: CPU Time: '34932.484375'
2025-04-20 03:36:14 (11508): Status Report: Elapsed Time: '18000.000000'
2025-04-20 03:36:14 (11508): Status Report: CPU Time: '56377.031250'
2025-04-20 05:16:19 (11508): Status Report: Elapsed Time: '24000.000000'
2025-04-20 05:16:19 (11508): Status Report: CPU Time: '77821.890625'
2025-04-20 06:40:07 (11508): VM state change detected. (old = 'running', new = 'paused')
2025-04-20 06:40:28 (11508): VM state change detected. (old = 'paused', new = 'running')
2025-04-20 06:56:47 (11508): Status Report: Elapsed Time: '30000.000000'
2025-04-20 06:56:47 (11508): Status Report: CPU Time: '99207.093750'
2025-04-20 07:06:44 (11508): Guest Log:  *** Job finished ***
2025-04-20 07:06:44 (11508): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:05:59,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:00,114 | INFO     | [job] queue monitor thread has finished
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:03,472 | INFO     | [data] queue_monitor thread has finished
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:04,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882208687936)>', '<ExcThread(monitor, started 139881036637952)>']
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:04,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:04,302 | INFO     | [monitor] control thread has ended
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,216 | INFO     | all workflow threads have been joined
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,216 | INFO     | end of generic workflow (traces error code: 0)
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,217 | INFO     | traces error code: 0
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,601 [wrapper] ==== pilot stdout END ====
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,632 [wrapper] ==== wrapper stdout RESUME ====
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,648 [wrapper] pilotpid: 6047
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:09,664 [wrapper] Pilot exit status: 0
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,033 [wrapper] pandaids: 6607297428
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,188 [wrapper] cleanup supervisor_pilot 21841 6048
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,197 [wrapper] Test setup, not cleaning
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,208 [wrapper] apfmon messages muted
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,217 [wrapper] ==== wrapper stdout END ====
2025-04-20 07:06:44 (11508): Guest Log: 2025-04-19 22:06:10,225 [wrapper] ==== wrapper stderr END ====
2025-04-20 07:06:44 (11508): Guest Log:  *** Error codes and diagnostics ***
2025-04-20 07:06:44 (11508): Guest Log:     "exeErrorCode": 0,
2025-04-20 07:06:44 (11508): Guest Log:     "exeErrorDiag": "",
2025-04-20 07:06:44 (11508): Guest Log:     "pilotErrorCode": 0,
2025-04-20 07:06:44 (11508): Guest Log:     "pilotErrorDiag": "",
2025-04-20 07:06:44 (11508): Guest Log:  *** Listing of results directory ***
2025-04-20 07:06:44 (11508): Guest Log: total 200388
2025-04-20 07:06:44 (11508): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 19 03:24 pilot3.tar.gz
2025-04-20 07:06:44 (11508): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 19 03:27 queuedata.json
2025-04-20 07:06:44 (11508): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 19 03:27 runpilot2-wrapper.sh
2025-04-20 07:06:44 (11508): Guest Log: -rwxr-xr-x. 1 atlas atlas      6127 Apr 19 13:36 init_data.xml
2025-04-20 07:06:44 (11508): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 19 13:36 input.tar.gz
2025-04-20 07:06:44 (11508): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 13:36 start_atlas.sh
2025-04-20 07:06:44 (11508): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 13:36 EVNT.44075481._002990.pool.root.1 -> /data/./ATLAS.root_0
2025-04-20 07:06:44 (11508): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 19 13:36 pandaJob.out
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 13:37 setup.sh.local
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 13:39 agis_schedconf.cvmfs.json
2025-04-20 07:06:44 (11508): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 13:39 pilot3
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas 197148710 Apr 19 22:03 HITS.44075483._077062.pool.root.1
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas        96 Apr 19 22:04 pilot_heartbeat.json
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 19 22:05 memory_monitor_summary.json
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 22:05 agis_ddmendpoints.agis.ALL.json
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas    454959 Apr 19 22:05 log.44075483._077062.job.log.tgz.1
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas      7697 Apr 19 22:05 heartbeat.json
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 19 22:06 pilotlog.txt
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas   1668942 Apr 19 22:06 log.44075483._077062.job.log.1
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 22:06 output.list
2025-04-20 07:06:44 (11508): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 22:06 runtime_log
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas   2140160 Apr 19 22:06 result.tar.gz
2025-04-20 07:06:44 (11508): Guest Log: -rw-r--r--. 1 atlas atlas     10932 Apr 19 22:06 runtime_log.err
2025-04-20 07:06:44 (11508): Guest Log: -rw-------. 1 atlas atlas       660 Apr 19 22:06 BxfKDm82DQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmhrgLDmj8bOJn.diag
2025-04-20 07:06:45 (11508): Guest Log: Looking for outputfile HITS.44075483._077062.pool.root.1
2025-04-20 07:06:45 (11508): Guest Log: HITS file was successfully produced
2025-04-20 07:06:45 (11508): Guest Log: -rw-------. 1 atlas atlas 197148710 Apr 19 22:03 /home/atlas/RunAtlas/HITS.44075483._077062.pool.root.1
2025-04-20 07:06:50 (11508): Guest Log: Successfully finished the ATLAS job!
2025-04-20 07:06:50 (11508): Guest Log: Copying the results back to the shared directory!
2025-04-20 07:06:50 (11508): Guest Log:  *** Contents of shared directory: ***
2025-04-20 07:06:50 (11508): Guest Log: total 414512
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root 224622339 Apr 19 13:35 ATLAS.root_0
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root 197148710 Apr 19  2025 HITS.pool.root.1
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root      6127 Apr 19 13:35 init_data.xml
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 19 06:16 input.tar.gz
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root   2140160 Apr 19  2025 result.tar.gz
2025-04-20 07:06:50 (11508): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 06:16 start_atlas.sh
2025-04-20 07:06:50 (11508): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-20 07:06:50 (11508): VM Completion File Detected.
2025-04-20 07:06:50 (11508): Powering off VM.
2025-04-20 07:06:52 (11508): Successfully stopped VM.
2025-04-20 07:06:52 (11508): Deregistering VM. (boinc_af13ef73e4fb7dfa, slot#1)
2025-04-20 07:06:52 (11508): Removing network bandwidth throttle group from VM.
2025-04-20 07:06:52 (11508): Removing VM from VirtualBox.
07:06:57 (11508): called boinc_finish(0)

</stderr_txt>
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