Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 23:31:30 (3736): Detected: vboxwrapper 26206
2025-04-18 23:31:30 (3736): Detected: BOINC client v7.20.2
2025-04-18 23:31:32 (3736): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-18 23:31:32 (3736): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 23:31:33 (3736): Create VM. (boinc_fde7ca11e2121fc1, slot#0)
2025-04-18 23:31:34 (3736): Setting Memory Size for VM. (4400MB)
2025-04-18 23:31:34 (3736): Setting CPU Count for VM. (4)
2025-04-18 23:31:34 (3736): Setting Chipset Options for VM.
2025-04-18 23:31:35 (3736): Setting Graphics Controller Options for VM.
2025-04-18 23:31:35 (3736): Setting Boot Options for VM.
2025-04-18 23:31:35 (3736): Setting Network Configuration for NAT.
2025-04-18 23:31:36 (3736): Enabling VM Network Access.
2025-04-18 23:31:36 (3736): Disabling USB Support for VM.
2025-04-18 23:31:36 (3736): Disabling COM Port Support for VM.
2025-04-18 23:31:36 (3736): Disabling LPT Port Support for VM.
2025-04-18 23:31:37 (3736): Disabling Audio Support for VM.
2025-04-18 23:31:37 (3736): Disabling Clipboard Support for VM.
2025-04-18 23:31:37 (3736): Disabling Drag and Drop Support for VM.
2025-04-18 23:31:38 (3736): Adding storage controller(s) to VM.
2025-04-18 23:31:38 (3736): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 23:31:39 (3736): Adding VirtualBox Guest Additions to VM.
2025-04-18 23:31:39 (3736): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 23:31:40 (3736): forwarding host port 62894 to guest port 80
2025-04-18 23:31:40 (3736): Enabling remote desktop for VM.
2025-04-18 23:31:40 (3736): Required extension pack not installed, remote desktop not enabled.
2025-04-18 23:31:40 (3736): Enabling shared directory for VM.
2025-04-18 23:31:41 (3736): Starting VM using VBoxManage interface. (boinc_fde7ca11e2121fc1, slot#0)
2025-04-18 23:31:47 (3736): Successfully started VM. (PID = '14304')
2025-04-18 23:31:47 (3736): Reporting VM Process ID to BOINC.
2025-04-18 23:31:47 (3736): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-18 23:31:47 (3736): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 23:31:47 (3736): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 23:31:47 (3736): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 23:31:47 (3736): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 23:31:47 (3736): Detected: Web Application Enabled (http://localhost:62894)
2025-04-18 23:31:47 (3736): Preference change detected
2025-04-18 23:31:47 (3736): Setting CPU throttle for VM. (100%)
2025-04-18 23:31:47 (3736): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 23:31:49 (3736): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 23:31:49 (3736): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 23:31:52 (3736): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 23:31:52 (3736): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 23:31:52 (3736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 23:32:00 (3736): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 23:32:00 (3736): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 23:32:11 (3736): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000296 main     Log opened 2025-04-18T23:32:08.799855000Z
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000443 main     OS Product: Linux
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000478 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000509 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000540 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000541 main     Process ID: 1305
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.000541 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 23:32:11 (3736): Guest Log: 00:00:00.002215 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 23:32:11 (3736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 23:32:11 (3736): Guest Log: [INFO] Mounting shared directory
2025-04-18 23:32:11 (3736): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 23:32:16 (3736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 23:32:16 (3736): Guest Log: [INFO] Detected branch: prod
2025-04-18 23:32:16 (3736): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 23:32:16 (3736): Guest Log: Copying input files
2025-04-18 23:32:18 (3736): Guest Log: Copied input files into RunAtlas.
2025-04-18 23:32:18 (3736): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 23:32:18 (3736): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 23:32:18 (3736): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 23:32:18 (3736): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 23:32:21 (3736): Guest Log: 00:00:10.007733 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 734 353 000ns (GuestNow=1 745 033 540 539 551 000 ns GuestLast=1 745 019 128 805 198 000 ns fSetTimeLastLoop=true )
2025-04-18 23:32:26 (3736): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 23:32:26 (3736): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 23:32:26 (3736): Guest Log: 2.6.3.0 1585 0 30016 145025 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 23:32:31 (3736): Guest Log: copied the webapp to /var/www
2025-04-18 23:32:31 (3736): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-18 23:32:31 (3736): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-18 23:32:32 (3736): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 23:32:32 (3736): Guest Log:  *** Starting ATLAS job. (PandaID=6606094126 taskID=44075483) ***
2025-04-19 01:18:23 (3736): Status Report: Elapsed Time: '6000.638924'
2025-04-19 01:18:23 (3736): Status Report: CPU Time: '21218.015625'
2025-04-19 03:05:42 (3736): Status Report: Elapsed Time: '12001.511473'
2025-04-19 03:05:42 (3736): Status Report: CPU Time: '46663.937500'
2025-04-19 04:20:08 (3736): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 04:20:28 (3736): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 04:22:45 (3736): Guest Log:  *** Job finished ***
2025-04-19 04:22:50 (3736): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:02,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:02,804 | INFO     | [data] queue_monitor thread has finished
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:03,311 | INFO     | [job] queue monitor thread has finished
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:04,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415968520000)>', '<ExcThread(monitor, started 140415080584960)>']
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:05,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:05,686 | INFO     | [monitor] control thread has ended
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,629 | INFO     | all workflow threads have been joined
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,630 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,630 | INFO     | traces error code: 0
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,851 [wrapper] ==== pilot stdout END ====
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,863 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,873 [wrapper] pilotpid: 5913
2025-04-19 04:22:50 (3736): Guest Log: 2025-04-19 08:22:09,885 [wrapper] Pilot exit status: 0
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:09,977 [wrapper] pandaids: 6606094126
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:10,052 [wrapper] cleanup supervisor_pilot 19814 5914
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:10,063 [wrapper] Test setup, not cleaning
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:10,074 [wrapper] apfmon messages muted
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:10,085 [wrapper] ==== wrapper stdout END ====
2025-04-19 04:22:55 (3736): Guest Log: 2025-04-19 08:22:10,097 [wrapper] ==== wrapper stderr END ====
2025-04-19 04:22:55 (3736): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 04:22:55 (3736): Guest Log:     "exeErrorCode": 0,
2025-04-19 04:22:55 (3736): Guest Log:     "exeErrorDiag": "",
2025-04-19 04:22:55 (3736): Guest Log:     "pilotErrorCode": 0,
2025-04-19 04:22:55 (3736): Guest Log:     "pilotErrorDiag": "",
2025-04-19 04:22:55 (3736): Guest Log:  *** Listing of results directory ***
2025-04-19 04:22:55 (3736): Guest Log: total 203628
2025-04-19 04:22:55 (3736): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 03:54 pilot3.tar.gz
2025-04-19 04:22:55 (3736): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 04:03 queuedata.json
2025-04-19 04:22:55 (3736): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 04:04 runpilot2-wrapper.sh
2025-04-19 04:22:55 (3736): Guest Log: -rwxr-xr-x. 1 atlas atlas      8656 Apr 19 03:32 init_data.xml
2025-04-19 04:22:55 (3736): Guest Log: -rwxr-xr-x. 1 atlas atlas    508899 Apr 19 03:32 input.tar.gz
2025-04-19 04:22:55 (3736): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 03:32 start_atlas.sh
2025-04-19 04:22:55 (3736): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 03:32 EVNT.44075481._000633.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 04:22:55 (3736): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 19 03:32 pandaJob.out
2025-04-19 04:22:55 (3736): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 03:32 setup.sh.local
2025-04-19 04:22:55 (3736): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 03:33 agis_schedconf.cvmfs.json
2025-04-19 04:22:59 (3736): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 03:34 pilot3
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas 201088885 Apr 19 08:20 HITS.44075483._064034.pool.root.1
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 08:21 pilot_heartbeat.json
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas      1038 Apr 19 08:21 memory_monitor_summary.json
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 08:21 agis_ddmendpoints.agis.ALL.json
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas    360440 Apr 19 08:21 log.44075483._064034.job.log.tgz.1
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas      7737 Apr 19 08:21 heartbeat.json
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 19 08:22 pilotlog.txt
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas   1454350 Apr 19 08:22 log.44075483._064034.job.log.1
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 08:22 output.list
2025-04-19 04:22:59 (3736): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 08:22 runtime_log
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas   1832960 Apr 19 08:22 result.tar.gz
2025-04-19 04:22:59 (3736): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr 19 08:22 runtime_log.err
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas       671 Apr 19 08:22 0iNNDmq8rP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm1h4KDmZqJKAn.diag
2025-04-19 04:22:59 (3736): Guest Log: Looking for outputfile HITS.44075483._064034.pool.root.1
2025-04-19 04:22:59 (3736): Guest Log: HITS file was successfully produced
2025-04-19 04:22:59 (3736): Guest Log: -rw-------. 1 atlas atlas 201088885 Apr 19 08:20 /home/atlas/RunAtlas/HITS.44075483._064034.pool.root.1
2025-04-19 04:22:59 (3736): Guest Log: Successfully finished the ATLAS job!
2025-04-19 04:22:59 (3736): Guest Log: Copying the results back to the shared directory!
2025-04-19 04:22:59 (3736): Guest Log:  *** Contents of shared directory: ***
2025-04-19 04:22:59 (3736): Guest Log: total 418632
2025-04-19 04:22:59 (3736): Guest Log: -rwxrwxrwx. 1 root root 225206286 Apr 19 03:31 ATLAS.root_0
2025-04-19 04:23:02 (3736): Guest Log: -rwxrwxrwx. 1 root root 201088885 Apr 19  2025 HITS.pool.root.1
2025-04-19 04:23:02 (3736): Guest Log: -rwxrwxrwx. 1 root root      8656 Apr 19 03:31 init_data.xml
2025-04-19 04:23:02 (3736): Guest Log: -rwxrwxrwx. 1 root root    508899 Apr 19 03:30 input.tar.gz
2025-04-19 04:23:02 (3736): Guest Log: -rwxrwxrwx. 1 root root   1832960 Apr 19  2025 result.tar.gz
2025-04-19 04:23:02 (3736): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 03:30 start_atlas.sh
2025-04-19 04:23:02 (3736): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 04:23:02 (3736): Guest Log: 04:50:08.859898 control  Guest control service stopped
2025-04-19 04:23:02 (3736): Guest Log: 04:50:08.861906 control  Guest control worker returned with rc=VINF_SUCCESS
2025-04-19 04:23:02 (3736): Guest Log: 04:50:08.862107 main     Session 0 is about to close ...
2025-04-19 04:23:02 (3736): Guest Log: 04:50:08.862405 main     Stopping all guest processes ...
2025-04-19 04:23:02 (3736): Guest Log: 04:50:08.862540 main     Closing all guest files ...
2025-04-19 04:23:02 (3736): Guest Log: 04:50:09.072394 main     Ended.
2025-04-19 04:23:02 (3736): VM is no longer is a running state. It is in 'poweredoff'.
2025-04-19 04:23:02 (3736): VM state change detected. (old = 'running', new = 'poweredoff')
2025-04-19 04:23:02 (3736): VM Completion File Detected.
2025-04-19 04:23:02 (3736): Powering off VM.
2025-04-19 04:23:02 (3736): Deregistering VM. (boinc_fde7ca11e2121fc1, slot#0)
2025-04-19 04:23:04 (3736): Removing network bandwidth throttle group from VM.
2025-04-19 04:23:05 (3736): Removing VM from VirtualBox.
04:23:10 (3736): called boinc_finish(0)

</stderr_txt>
]]>

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