Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 05:07:18 (44220): Detected: vboxwrapper 26206
2025-04-19 05:07:18 (44220): Detected: BOINC client v8.2.0
2025-04-19 05:07:19 (44220): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-19 05:07:19 (44220): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 05:07:20 (44220): Create VM. (boinc_8e69fc2f14b7759a, slot#4)
2025-04-19 05:07:20 (44220): Setting Memory Size for VM. (4096MB)
2025-04-19 05:07:21 (44220): Setting CPU Count for VM. (1)
2025-04-19 05:07:21 (44220): Setting Chipset Options for VM.
2025-04-19 05:07:21 (44220): Setting Graphics Controller Options for VM.
2025-04-19 05:07:21 (44220): Setting Boot Options for VM.
2025-04-19 05:07:22 (44220): Setting Network Configuration for NAT.
2025-04-19 05:07:22 (44220): Enabling VM Network Access.
2025-04-19 05:07:22 (44220): Disabling USB Support for VM.
2025-04-19 05:07:22 (44220): Disabling COM Port Support for VM.
2025-04-19 05:07:23 (44220): Disabling LPT Port Support for VM.
2025-04-19 05:07:23 (44220): Disabling Audio Support for VM.
2025-04-19 05:07:23 (44220): Disabling Clipboard Support for VM.
2025-04-19 05:07:23 (44220): Disabling Drag and Drop Support for VM.
2025-04-19 05:07:24 (44220): Adding storage controller(s) to VM.
2025-04-19 05:07:24 (44220): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 05:07:25 (44220): Adding VirtualBox Guest Additions to VM.
2025-04-19 05:07:25 (44220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 05:07:25 (44220): forwarding host port 56269 to guest port 80
2025-04-19 05:07:25 (44220): Enabling remote desktop for VM.
2025-04-19 05:07:26 (44220): Required extension pack not installed, remote desktop not enabled.
2025-04-19 05:07:26 (44220): Enabling shared directory for VM.
2025-04-19 05:07:26 (44220): Starting VM using VBoxManage interface. (boinc_8e69fc2f14b7759a, slot#4)
2025-04-19 05:07:31 (44220): Successfully started VM. (PID = '23524')
2025-04-19 05:07:31 (44220): Reporting VM Process ID to BOINC.
2025-04-19 05:07:31 (44220): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-19 05:07:31 (44220): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 05:07:31 (44220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 05:07:31 (44220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 05:07:31 (44220): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 05:07:31 (44220): Detected: Web Application Enabled (http://localhost:56269)
2025-04-19 05:07:31 (44220): Preference change detected
2025-04-19 05:07:31 (44220): Setting CPU throttle for VM. (100%)
2025-04-19 05:07:31 (44220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 05:07:33 (44220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 05:07:33 (44220): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 05:07:35 (44220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 05:07:35 (44220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 05:07:35 (44220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 05:07:38 (44220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 05:07:38 (44220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 05:07:43 (44220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000142 main     Log opened 2025-04-19T05:07:41.697401000Z
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000257 main     OS Product: Linux
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000280 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000295 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000311 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000311 main     Process ID: 1245
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.000312 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 05:07:43 (44220): Guest Log: 00:00:00.001222 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 05:07:43 (44220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 05:07:43 (44220): Guest Log: [INFO] Mounting shared directory
2025-04-19 05:07:43 (44220): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 05:07:47 (44220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 05:07:47 (44220): Guest Log: [INFO] Detected branch: prod
2025-04-19 05:07:47 (44220): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 05:07:47 (44220): Guest Log: Copying input files
2025-04-19 05:07:48 (44220): Guest Log: Copied input files into RunAtlas.
2025-04-19 05:07:48 (44220): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-19 05:07:53 (44220): Guest Log: 00:00:10.011917 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 975 799 000ns (GuestNow=1 745 032 072 732 669 000 ns GuestLast=1 745 039 261 708 468 000 ns fSetTimeLastLoop=true )
2025-04-19 05:07:54 (44220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 05:07:54 (44220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 05:07:54 (44220): Guest Log: 2.6.3.0 1515 0 31560 145023 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-19 05:07:55 (44220): Guest Log: copied the webapp to /var/www
2025-04-19 05:07:55 (44220): Guest Log: core_number=1
2025-04-19 05:07:55 (44220): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 05:07:55 (44220): Guest Log:  *** Starting ATLAS job. (PandaID=6603671863 taskID=44075483) ***
2025-04-19 06:47:33 (44220): Status Report: Elapsed Time: '6000.000000'
2025-04-19 06:47:33 (44220): Status Report: CPU Time: '5783.656250'
2025-04-19 08:27:36 (44220): Status Report: Elapsed Time: '12000.000000'
2025-04-19 08:27:36 (44220): Status Report: CPU Time: '11758.796875'
2025-04-19 10:07:38 (44220): Status Report: Elapsed Time: '18000.000000'
2025-04-19 10:07:38 (44220): Status Report: CPU Time: '17735.500000'
2025-04-19 11:47:41 (44220): Status Report: Elapsed Time: '24000.000000'
2025-04-19 11:47:41 (44220): Status Report: CPU Time: '23714.453125'
2025-04-19 12:06:41 (44220): Guest Log:  *** Job finished ***
2025-04-19 12:06:41 (44220): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:20,270 | INFO     | [data] queue_monitor thread has finished
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:24,070 | INFO     | job.realtimelogging is not enabled
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:25,072 | INFO     | [payload] run_realtimelog thread has finished
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:26,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340595881792)>', '<ExcThread(monitor, started 140340287739648)>']
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:26,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:26,306 | INFO     | [monitor] control thread has ended
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,058 | INFO     | all workflow threads have been joined
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,058 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,058 | INFO     | traces error code: 0
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,142 [wrapper] ==== pilot stdout END ====
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,144 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,146 [wrapper] pilotpid: 5783
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,148 [wrapper] Pilot exit status: 0
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,158 [wrapper] pandaids: 6603671863
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,167 [wrapper] cleanup supervisor_pilot 31741 5784
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,169 [wrapper] Test setup, not cleaning
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,170 [wrapper] apfmon messages muted
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,172 [wrapper] ==== wrapper stdout END ====
2025-04-19 12:06:41 (44220): Guest Log: 2025-04-19 10:06:31,173 [wrapper] ==== wrapper stderr END ====
2025-04-19 12:06:41 (44220): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 12:06:41 (44220): Guest Log:     "exeErrorCode": 0,
2025-04-19 12:06:41 (44220): Guest Log:     "exeErrorDiag": "",
2025-04-19 12:06:41 (44220): Guest Log:     "pilotErrorCode": 0,
2025-04-19 12:06:41 (44220): Guest Log:     "pilotErrorDiag": "",
2025-04-19 12:06:41 (44220): Guest Log:  *** Listing of results directory ***
2025-04-19 12:06:41 (44220): Guest Log: total 194392
2025-04-19 12:06:41 (44220): Guest Log: -rw-r--r--. 1 atlas atlas    503527 Apr  3 07:42 pilot3.tar.gz
2025-04-19 12:06:41 (44220): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 23:54 queuedata.json
2025-04-19 12:06:41 (44220): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 23:55 runpilot2-wrapper.sh
2025-04-19 12:06:41 (44220): Guest Log: -rwxr-xr-x. 1 atlas atlas      9352 Apr 19 03:07 init_data.xml
2025-04-19 12:06:41 (44220): Guest Log: -rwxr-xr-x. 1 atlas atlas    517109 Apr 19 03:07 input.tar.gz
2025-04-19 12:06:41 (44220): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 03:07 start_atlas.sh
2025-04-19 12:06:41 (44220): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 03:07 EVNT.44075481._000840.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 12:06:41 (44220): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 19 03:07 pandaJob.out
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas       460 Apr 19 03:07 setup.sh.local
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 03:08 agis_schedconf.cvmfs.json
2025-04-19 12:06:41 (44220): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 03:08 pilot3
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas 190004243 Apr 19 10:05 HITS.44075483._021641.pool.root.1
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas      1025 Apr 19 10:06 memory_monitor_summary.json
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 10:06 agis_ddmendpoints.agis.ALL.json
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas    387655 Apr 19 10:06 log.44075483._021641.job.log.tgz.1
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 10:06 pilot_heartbeat.json
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas      7672 Apr 19 10:06 heartbeat.json
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 19 10:06 pilotlog.txt
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas   2235405 Apr 19 10:06 log.44075483._021641.job.log.1
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 10:06 output.list
2025-04-19 12:06:41 (44220): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 10:06 runtime_log
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas   2641920 Apr 19 10:06 result.tar.gz
2025-04-19 12:06:41 (44220): Guest Log: -rw-r--r--. 1 atlas atlas     11174 Apr 19 10:06 runtime_log.err
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas       656 Apr 19 10:06 INJKDmdpiO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmSq0KDm5DURpm.diag
2025-04-19 12:06:41 (44220): Guest Log: Looking for outputfile HITS.44075483._021641.pool.root.1
2025-04-19 12:06:41 (44220): Guest Log: HITS file was successfully produced
2025-04-19 12:06:41 (44220): Guest Log: -rw-------. 1 atlas atlas 190004243 Apr 19 10:05 /home/atlas/RunAtlas/HITS.44075483._021641.pool.root.1
2025-04-19 12:06:42 (44220): Guest Log: Successfully finished the ATLAS job!
2025-04-19 12:06:42 (44220): Guest Log: Copying the results back to the shared directory!
2025-04-19 12:06:42 (44220): Guest Log:  *** Contents of shared directory: ***
2025-04-19 12:06:42 (44220): Guest Log: total 409000
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root 225612383 Apr 19 03:07 ATLAS.root_0
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root 190004243 Apr 19  2025 HITS.pool.root.1
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root      9352 Apr 19 03:07 init_data.xml
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root    517109 Apr 19 03:06 input.tar.gz
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root   2641920 Apr 19  2025 result.tar.gz
2025-04-19 12:06:42 (44220): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 03:06 start_atlas.sh
2025-04-19 12:06:42 (44220): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 12:06:42 (44220): VM Completion File Detected.
2025-04-19 12:06:42 (44220): Powering off VM.
2025-04-19 12:06:43 (44220): Successfully stopped VM.
2025-04-19 12:06:43 (44220): Deregistering VM. (boinc_8e69fc2f14b7759a, slot#4)
2025-04-19 12:06:43 (44220): Removing network bandwidth throttle group from VM.
2025-04-19 12:06:43 (44220): Removing VM from VirtualBox.
12:06:48 (44220): called boinc_finish(0)

</stderr_txt>
]]>

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