Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:40:30 (30189): wrapper (7.7.26015): starting
22:40:30 (30189): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 22:40:30] Arguments: --nthreads 12
[2025-04-18 22:40:30] Threads: 12
[2025-04-18 22:40:30] Checking for CVMFS
[2025-04-18 22:40:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 22:40:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 22:40:30] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 22:40:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 22:40:30] 2.11.2.0 2994 218103 165992 145023 2 57 11065049 20275200 1 130560 0 24057228 99.951 8188300 49468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 22:40:30] CVMFS is ok
[2025-04-18 22:40:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 22:40:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 22:40:30] Further information can be found at the LHC@home message board.
[2025-04-18 22:40:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 22:40:30] Checking for apptainer binary...
[2025-04-18 22:40:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 22:40:30] Running /usr/bin/apptainer --version
[2025-04-18 22:40:30] apptainer version 1.3.2-1.el7
[2025-04-18 22:40:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 22:40:32] c-205-21.aglt2.org
[2025-04-18 22:40:32] apptainer works
[2025-04-18 22:40:32] Set ATHENA_PROC_NUMBER=12
[2025-04-18 22:40:32] Set ATHENA_CORE_NUMBER=12
[2025-04-18 22:40:32] Starting ATLAS job with PandaID=6607024672
[2025-04-18 22:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 00:06:35]  *** The last 200 lines of the pilot log: ***
[2025-04-19 00:06:35]  protocol_id=None
[2025-04-19 00:06:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 00:06:35]  replicas=None
[2025-04-19 00:06:35]  scope=mc23_13p6TeV
[2025-04-19 00:06:35]  status=None
[2025-04-19 00:06:35]  status_code=0
[2025-04-19 00:06:35]  storage_token=
[2025-04-19 00:06:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6607024672/log.44075483._075080.job.log.tgz.1
[2025-04-19 00:06:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/14/log.44075483._075080.job.log.tgz.1
[2025-04-19 00:06:35]  workdir=None
[2025-04-19 00:06:35] ]
[2025-04-19 00:06:35] 2025-04-19 04:06:12,099 | INFO     | transferring file log.44075483._075080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6607024672/log.44075483._075080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-19 00:06:35] 2025-04-19 04:06:12,099 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6607024672/log.44075483._075080.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._075080.job
[2025-04-19 00:06:35] 2025-04-19 04:06:12,120 | INFO     | adding to output.list: log.44075483._075080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/14/log.44075483._075080.job.log.tg
[2025-04-19 00:06:35] 2025-04-19 04:06:12,121 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 00:06:35] 2025-04-19 04:06:12,121 | INFO     | summary of transferred files:
[2025-04-19 00:06:35] 2025-04-19 04:06:12,121 | INFO     |  -- lfn=log.44075483._075080.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 00:06:35] 2025-04-19 04:06:12,121 | INFO     | stage-out finished correctly
[2025-04-19 00:06:35] 2025-04-19 04:06:13,259 | WARNING  | process 8790 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 00:06:35] 2025-04-19 04:06:13,259 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607024672/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 00:06:35] 2025-04-19 04:06:13,347 | INFO     | number of running child processes to parent process 8790: 1
[2025-04-19 00:06:35] 2025-04-19 04:06:13,348 | INFO     | maximum number of monitored processes: 6
[2025-04-19 00:06:35] 2025-04-19 04:06:13,869 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 00:06:35] 2025-04-19 04:06:15,851 | INFO     | monitor loop #383: job 0:6607024672 is in state 'finished'
[2025-04-19 00:06:35] 2025-04-19 04:06:15,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 00:06:35] 2025-04-19 04:06:16,252 | INFO     | job 6607024672 has state=finished
[2025-04-19 00:06:35] 2025-04-19 04:06:16,252 | INFO     | preparing for final server update for job 6607024672 in state='finished'
[2025-04-19 00:06:35] 2025-04-19 04:06:16,252 | INFO     | this job has now completed (state=finished)
[2025-04-19 00:06:35] 2025-04-19 04:06:16,253 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 00:06:35] 2025-04-19 04:06:16,253 | INFO     | log transfer has been attempted: DONE
[2025-04-19 00:06:35] 2025-04-19 04:06:16,253 | INFO     | job 6607024672 has finished - writing final server update
[2025-04-19 00:06:35] 2025-04-19 04:06:16,253 | INFO     | total number of processed events: 400 (read)
[2025-04-19 00:06:35] 2025-04-19 04:06:16,255 | INFO     | executing command: lscpu
[2025-04-19 00:06:35] 2025-04-19 04:06:16,283 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 00:06:35] 2025-04-19 04:06:18,354 | INFO     | monitor loop #384: job 0:6607024672 is in state 'finished'
[2025-04-19 00:06:35] 2025-04-19 04:06:18,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 00:06:35] 2025-04-19 04:06:20,857 | INFO     | monitor loop #385: job 0:6607024672 is in state 'finished'
[2025-04-19 00:06:35] 2025-04-19 04:06:20,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 00:06:35] 2025-04-19 04:06:20,989 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 00:06:35] 2025-04-19 04:06:20,989 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6607024672/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 00:06:35] 2025-04-19 04:06:20,990 | INFO     | extracted standard info from prmon json
[2025-04-19 00:06:35] 2025-04-19 04:06:20,990 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 00:06:35] 2025-04-19 04:06:20,990 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 00:06:35] 2025-04-19 04:06:20,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 00:06:35] 2025-04-19 04:06:20,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 00:06:35] 2025-04-19 04:06:20,993 | INFO     | fitting pss+swap vs Time
[2025-04-19 00:06:35] 2025-04-19 04:06:20,993 | INFO     | sum of square deviations: 141539398.0
[2025-04-19 00:06:35] 2025-04-19 04:06:20,993 | INFO     | sum of deviations: 18052669644.0
[2025-04-19 00:06:35] 2025-04-19 04:06:20,993 | INFO     | mean x: 1745033097.0
[2025-04-19 00:06:35] 2025-04-19 04:06:20,993 | INFO     | mean y: 2592081.1558441557
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | -- intersect: -222567988712.09586
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | intersect: -222567988712.09586
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | chi2: 2.291673056572426
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | -- intersect: -222567988712.09586
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | current memory leak: 127.55 B/s (using 77 data points, chi2=2.29)
[2025-04-19 00:06:35] 2025-04-19 04:06:20,994 | INFO     | ..............................
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . Timing measurements:
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . get job = 0 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . initial setup = 2 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . payload setup = 7 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . stage-in = 0 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . payload execution = 5098 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . stage-out = 0 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | . log creation = 0 s
[2025-04-19 00:06:35] 2025-04-19 04:06:20,995 | INFO     | ..............................
[2025-04-19 00:06:35] 2025-04-19 04:06:21,239 | INFO     | 
[2025-04-19 00:06:35] 2025-04-19 04:06:21,239 | INFO     | job summary report
[2025-04-19 00:06:35] 2025-04-19 04:06:21,239 | INFO     | --------------------------------------------------
[2025-04-19 00:06:35] 2025-04-19 04:06:21,239 | INFO     | PanDA job id: 6607024672
[2025-04-19 00:06:35] 2025-04-19 04:06:21,239 | INFO     | task id: 44075483
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | errors: (none)
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | pilot state: finished 
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | transexitcode: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | exeerrorcode: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | exeerrordiag: 
[2025-04-19 00:06:35] 2025-04-19 04:06:21,240 | INFO     | exitcode: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | exitmsg: OK
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | cpuconsumptiontime: 47515 s
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | nevents: 400
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | neventsw: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | pid: 8790
[2025-04-19 00:06:35] 2025-04-19 04:06:21,241 | INFO     | pgrp: 8790
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | corecount: 12
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | event service: False
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | sizes: {0: 2425996, 1: 2426852, 6: 2427058, 12: 2427086, 5110: 2453290, 5111: 2462231, 5113: 2462415, 5120: 2462585}
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | --------------------------------------------------
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | 
[2025-04-19 00:06:35] 2025-04-19 04:06:21,242 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 00:06:35] 2025-04-19 04:06:21,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,265 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,265 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 00:06:35] 2025-04-19 04:06:21,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,268 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 00:06:35] 2025-04-19 04:06:21,268 | INFO     | job 6607024672 has completed (purged errors)
[2025-04-19 00:06:35] 2025-04-19 04:06:21,268 | INFO     | overall cleanup function is called
[2025-04-19 00:06:35] 2025-04-19 04:06:22,277 | INFO     | --- collectZombieJob: --- 10, [8790]
[2025-04-19 00:06:35] 2025-04-19 04:06:22,277 | INFO     | zombie collector waiting for pid 8790
[2025-04-19 00:06:35] 2025-04-19 04:06:22,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 00:06:35] 2025-04-19 04:06:22,287 | INFO     | collected zombie processes
[2025-04-19 00:06:35] 2025-04-19 04:06:22,287 | INFO     | will attempt to kill all subprocesses of pid=8790
[2025-04-19 00:06:35] 2025-04-19 04:06:22,380 | INFO     | process IDs to be killed: [8790] (in reverse order)
[2025-04-19 00:06:35] 2025-04-19 04:06:22,433 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 00:06:35] 2025-04-19 04:06:22,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 00:06:35] 2025-04-19 04:06:22,437 | INFO     | did not find any defunct processes belonging to 8790
[2025-04-19 00:06:35] 2025-04-19 04:06:22,441 | INFO     | did not find any defunct processes belonging to 8790
[2025-04-19 00:06:35] 2025-04-19 04:06:22,441 | INFO     | ready for new job
[2025-04-19 00:06:35] 2025-04-19 04:06:22,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 00:06:35] 2025-04-19 04:06:22,442 | INFO     | **************************************
[2025-04-19 00:06:35] 2025-04-19 04:06:22,442 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 00:06:35] 2025-04-19 04:06:22,443 | INFO     | **************************************
[2025-04-19 00:06:35] 2025-04-19 04:06:22,443 | INFO     | 
[2025-04-19 00:06:35] 2025-04-19 04:06:22,443 | INFO     | architecture information:
[2025-04-19 00:06:35] 2025-04-19 04:06:22,444 | INFO     | executing command: cat /etc/os-release
[2025-04-19 00:06:35] 2025-04-19 04:06:22,457 | INFO     | cat /etc/os-release:
[2025-04-19 00:06:35] NAME="CentOS Linux"
[2025-04-19 00:06:35] VERSION="7 (Core)"
[2025-04-19 00:06:35] ID="centos"
[2025-04-19 00:06:35] ID_LIKE="rhel fedora"
[2025-04-19 00:06:35] VERSION_ID="7"
[2025-04-19 00:06:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 00:06:35] ANSI_COLOR="0;31"
[2025-04-19 00:06:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 00:06:35] HOME_URL="https://www.centos.org/"
[2025-04-19 00:06:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 00:06:35] 
[2025-04-19 00:06:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 00:06:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 00:06:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 00:06:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 00:06:35] 
[2025-04-19 00:06:35] 2025-04-19 04:06:22,457 | INFO     | **************************************
[2025-04-19 00:06:35] 2025-04-19 04:06:22,960 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 00:06:35] 2025-04-19 04:06:22,975 | INFO     | sufficient remaining disk space (29388439552 B)
[2025-04-19 00:06:35] 2025-04-19 04:06:22,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 00:06:35] 2025-04-19 04:06:22,976 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 00:06:35] 2025-04-19 04:06:22,976 | INFO     | update_server=False
[2025-04-19 00:06:35] 2025-04-19 04:06:22,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 00:06:35] 2025-04-19 04:06:22,976 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 00:06:35] 2025-04-19 04:06:22,977 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 00:06:35] 2025-04-19 04:06:22,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 00:06:35] 2025-04-19 04:06:22,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 00:06:35] 2025-04-19 04:06:22,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 00:06:35] 2025-04-19 04:06:22,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 00:06:35] 2025-04-19 04:06:23,360 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 00:06:35] 2025-04-19 04:06:23,360 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 00:06:35] 2025-04-19 04:06:23,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 00:06:35] 2025-04-19 04:06:23,361 | INFO     | will abort loop
[2025-04-19 00:06:35] 2025-04-19 04:06:23,394 | INFO     | all data control threads have been joined
[2025-04-19 00:06:35] 2025-04-19 04:06:23,502 | INFO     | all payload control threads have been joined
[2025-04-19 00:06:35] 2025-04-19 04:06:23,797 | INFO     | all job control threads have been joined
[2025-04-19 00:06:35] 2025-04-19 04:06:23,982 | INFO     | [job] retrieve thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:23,983 | INFO     | [job] queue monitor thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,005 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,048 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,181 | INFO     | [payload] failed_post thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,364 | INFO     | [job] job monitor thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,401 | INFO     | [data] control thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 00:06:35] 2025-04-19 04:06:24,507 | INFO     | [payload] control thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,689 | INFO     | [payload] validate_post thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,752 | INFO     | [data] copytool_in thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,803 | INFO     | [job] control thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,972 | INFO     | [job] validate thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:24,983 | INFO     | [data] copytool_out thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:25,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:25,170 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:28,468 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 00:06:35] 2025-04-19 04:06:30,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759355950912)>', '<ExcThread(monitor, started 139759057868544)>']
[2025-04-19 00:06:35] 2025-04-19 04:06:31,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 00:06:35] 2025-04-19 04:06:31,012 | INFO     | [monitor] control thread has ended
[2025-04-19 00:06:35] 2025-04-19 04:06:35,462 | INFO     | all workflow threads have been joined
[2025-04-19 00:06:35] 2025-04-19 04:06:35,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 00:06:35] 2025-04-19 04:06:35,462 | INFO     | traces error code: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:35,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 00:06:35] 2025-04-19 04:06:35,566 [wrapper] ==== pilot stdout END ====
[2025-04-19 00:06:35] 2025-04-19 04:06:35,570 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 00:06:35] 2025-04-19 04:06:35,574 [wrapper] pilotpid: 1351
[2025-04-19 00:06:35] 2025-04-19 04:06:35,578 [wrapper] Pilot exit status: 0
[2025-04-19 00:06:35] 2025-04-19 04:06:35,593 [wrapper] pandaids: 6607024672
[2025-04-19 00:06:35] 2025-04-19 04:06:35,633 [wrapper] cleanup supervisor_pilot 22243 1352
[2025-04-19 00:06:35] 2025-04-19 04:06:35,637 [wrapper] Test setup, not cleaning
[2025-04-19 00:06:35] 2025-04-19 04:06:35,641 [wrapper] apfmon messages muted
[2025-04-19 00:06:35] 2025-04-19 04:06:35,645 [wrapper] ==== wrapper stdout END ====
[2025-04-19 00:06:35] 2025-04-19 04:06:35,649 [wrapper] ==== wrapper stderr END ====
[2025-04-19 00:06:35]  *** Error codes and diagnostics ***
[2025-04-19 00:06:35]     "exeErrorCode": 0,
[2025-04-19 00:06:35]     "exeErrorDiag": "",
[2025-04-19 00:06:35]     "pilotErrorCode": 0,
[2025-04-19 00:06:35]     "pilotErrorDiag": "",
[2025-04-19 00:06:35]  *** Listing of results directory ***
[2025-04-19 00:06:35] total 419668
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 19:39 pilot3.tar.gz
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 20:00 queuedata.json
[2025-04-19 00:06:35] -rwx------ 1 boincer umatlas     37140 Apr 18 20:01 runpilot2-wrapper.sh
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas       100 Apr 18 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 00:06:35] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 22:40 run_atlas
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas       105 Apr 18 22:40 job.xml
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas 225584238 Apr 18 22:40 EVNT.44075481._002915.pool.root.1
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 22:40 start_atlas.sh
[2025-04-19 00:06:35] drwxrwx--x 2 boincer umatlas      4096 Apr 18 22:40 shared
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas    508886 Apr 18 22:40 input.tar.gz
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas         0 Apr 18 22:40 boinc_lockfile
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 22:40 pandaJob.out
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas       424 Apr 18 22:40 setup.sh.local
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas    991292 Apr 18 22:40 agis_schedconf.cvmfs.json
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas   1618536 Apr 18 22:40 agis_ddmendpoints.agis.ALL.json
[2025-04-19 00:06:35] drwx------ 4 boincer umatlas      4096 Apr 18 22:40 pilot3
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas      5868 Apr 19 00:00 init_data.xml
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas 198606072 Apr 19 00:05 HITS.44075483._075080.pool.root.1
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas        95 Apr 19 00:05 pilot_heartbeat.json
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas      1050 Apr 19 00:06 memory_monitor_summary.json
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas    360795 Apr 19 00:06 log.44075483._075080.job.log.tgz.1
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 00:06 boinc_mmap_file
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas        27 Apr 19 00:06 wrapper_checkpoint.txt
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas       529 Apr 19 00:06 boinc_task_state.xml
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas      7758 Apr 19 00:06 heartbeat.json
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas      4662 Apr 19 00:06 pilotlog.txt
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas    484659 Apr 19 00:06 log.44075483._075080.job.log.1
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas       357 Apr 19 00:06 output.list
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas       620 Apr 19 00:06 runtime_log
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas    860160 Apr 19 00:06 result.tar.gz
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas     11015 Apr 19 00:06 runtime_log.err
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas       658 Apr 19 00:06 25wKDmkpAQ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmkSgLDmeyevTm.diag
[2025-04-19 00:06:35] -rw-r--r-- 1 boincer umatlas     21741 Apr 19 00:06 stderr.txt
[2025-04-19 00:06:35] HITS file was successfully produced:
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas 198606072 Apr 19 00:05 shared/HITS.pool.root.1
[2025-04-19 00:06:35]  *** Contents of shared directory: ***
[2025-04-19 00:06:35] total 415612
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas 225584238 Apr 18 22:40 ATLAS.root_0
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 22:40 start_atlas.sh
[2025-04-19 00:06:35] -rw-r--r-- 2 boincer umatlas    508886 Apr 18 22:40 input.tar.gz
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas 198606072 Apr 19 00:05 HITS.pool.root.1
[2025-04-19 00:06:35] -rw------- 1 boincer umatlas    860160 Apr 19 00:06 result.tar.gz
00:06:37 (30189): run_atlas exited; CPU time 47499.803319
00:06:37 (30189): called boinc_finish(0)

</stderr_txt>
]]>

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