Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:45 (5801): wrapper (7.7.26015): starting
22:00:45 (5801): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 22:00:45] Arguments: --nthreads 8
[2025-04-18 22:00:45] Threads: 8
[2025-04-18 22:00:45] Checking for CVMFS
[2025-04-18 22:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 22:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 22:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 22:00:45] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-04-18 22:00:45] 
[2025-04-18 22:00:45] CVMFS is ok
[2025-04-18 22:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 22:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 22:00:45] Further information can be found at the LHC@home message board.
[2025-04-18 22:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 22:00:45] Checking for apptainer binary...
[2025-04-18 22:00:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 22:00:45] Running /usr/bin/apptainer --version
[2025-04-18 22:00:45] apptainer version 1.3.2-1.el7
[2025-04-18 22:00:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 22:00:46] c-212-19.aglt2.org
[2025-04-18 22:00:46] apptainer works
[2025-04-18 22:00:46] Set ATHENA_PROC_NUMBER=8
[2025-04-18 22:00:46] Set ATHENA_CORE_NUMBER=8
[2025-04-18 22:00:46] Starting ATLAS job with PandaID=6606995317
[2025-04-18 22:00:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 23:29:28]  *** The last 200 lines of the pilot log: ***
[2025-04-18 23:29:28]  replicas=None
[2025-04-18 23:29:28]  scope=mc23_13p6TeV
[2025-04-18 23:29:28]  status=None
[2025-04-18 23:29:28]  status_code=0
[2025-04-18 23:29:28]  storage_token=
[2025-04-18 23:29:28]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6606995317/log.44075483._074733.job.log.tgz.1
[2025-04-18 23:29:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/6d/log.44075483._074733.job.log.tgz.1
[2025-04-18 23:29:28]  workdir=None
[2025-04-18 23:29:28] ]
[2025-04-18 23:29:28] 2025-04-19 03:28:55,749 | INFO     | transferring file log.44075483._074733.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6606995317/log.44075483._074733.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 23:29:28] 2025-04-19 03:28:55,749 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6606995317/log.44075483._074733.job.log.tgz.1 /tmp/boinchome/slots/4/log.44075483._074733.job
[2025-04-18 23:29:28] 2025-04-19 03:28:55,833 | INFO     | adding to output.list: log.44075483._074733.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/6d/log.44075483._074733.job.log.tg
[2025-04-18 23:29:28] 2025-04-19 03:28:55,834 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 23:29:28] 2025-04-19 03:28:55,834 | INFO     | summary of transferred files:
[2025-04-18 23:29:28] 2025-04-19 03:28:55,834 | INFO     |  -- lfn=log.44075483._074733.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 23:29:28] 2025-04-19 03:28:55,834 | INFO     | stage-out finished correctly
[2025-04-18 23:29:28] 2025-04-19 03:28:56,720 | INFO     | PID=41000 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-18 23:29:28] 2025-04-19 03:28:56,720 | INFO     | .. there are 47 such processes running
[2025-04-18 23:29:28] 2025-04-19 03:28:57,626 | INFO     | monitor loop #387: job 0:6606995317 is in state 'finished'
[2025-04-18 23:29:28] 2025-04-19 03:28:57,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 23:29:28] 2025-04-19 03:28:58,327 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 23:29:28] 2025-04-19 03:29:00,130 | INFO     | monitor loop #388: job 0:6606995317 is in state 'finished'
[2025-04-18 23:29:28] 2025-04-19 03:29:00,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 23:29:28] 2025-04-19 03:29:00,944 | INFO     | job 6606995317 has state=finished
[2025-04-18 23:29:28] 2025-04-19 03:29:00,944 | INFO     | preparing for final server update for job 6606995317 in state='finished'
[2025-04-18 23:29:28] 2025-04-19 03:29:01,022 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-18 23:29:28] 2025-04-19 03:29:01,023 | INFO     | this job has now completed (state=finished)
[2025-04-18 23:29:28] 2025-04-19 03:29:01,023 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 23:29:28] 2025-04-19 03:29:01,023 | INFO     | log transfer has been attempted: DONE
[2025-04-18 23:29:28] 2025-04-19 03:29:01,023 | INFO     | job 6606995317 has finished - writing final server update
[2025-04-18 23:29:28] 2025-04-19 03:29:01,023 | INFO     | total number of processed events: 400 (read)
[2025-04-18 23:29:28] 2025-04-19 03:29:01,028 | INFO     | executing command: lscpu
[2025-04-18 23:29:28] 2025-04-19 03:29:01,078 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 23:29:28] 2025-04-19 03:29:02,634 | INFO     | monitor loop #389: job 0:6606995317 is in state 'finished'
[2025-04-18 23:29:28] 2025-04-19 03:29:02,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 23:29:28] 2025-04-19 03:29:05,137 | INFO     | monitor loop #390: job 0:6606995317 is in state 'finished'
[2025-04-18 23:29:28] 2025-04-19 03:29:05,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 23:29:28] 2025-04-19 03:29:07,640 | INFO     | monitor loop #391: job 0:6606995317 is in state 'finished'
[2025-04-18 23:29:28] 2025-04-19 03:29:07,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 23:29:28] 2025-04-19 03:29:07,808 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-18 23:29:28] 2025-04-19 03:29:07,809 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6606995317/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 23:29:28] 2025-04-19 03:29:07,810 | INFO     | extracted standard info from prmon json
[2025-04-18 23:29:28] 2025-04-19 03:29:07,810 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 23:29:28] 2025-04-19 03:29:07,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 23:29:28] 2025-04-19 03:29:07,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 23:29:28] 2025-04-19 03:29:07,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 23:29:28] 2025-04-19 03:29:07,812 | INFO     | fitting pss+swap vs Time
[2025-04-18 23:29:28] 2025-04-19 03:29:07,812 | INFO     | sum of square deviations: 152858680.0
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | sum of deviations: 24033844084.0
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | mean x: 1745030775.0
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | mean y: 2379060.3164556962
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | -- intersect: -274367369312.04736
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | intersect: -274367369312.04736
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | chi2: 2.0919155114660497
[2025-04-18 23:29:28] 2025-04-19 03:29:07,813 | INFO     | -- intersect: -274367369312.04736
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | current memory leak: 157.23 B/s (using 79 data points, chi2=2.09)
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | ..............................
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . Timing measurements:
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . get job = 0 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . initial setup = 2 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . payload setup = 7 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . stage-in = 0 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,814 | INFO     | . payload execution = 5246 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,815 | INFO     | . stage-out = 0 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,815 | INFO     | . log creation = 0 s
[2025-04-18 23:29:28] 2025-04-19 03:29:07,815 | INFO     | ..............................
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | 
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | job summary report
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | --------------------------------------------------
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | PanDA job id: 6606995317
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | task id: 44075483
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | errors: (none)
[2025-04-18 23:29:28] 2025-04-19 03:29:08,074 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | pilot state: finished 
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | transexitcode: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | exeerrorcode: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | exeerrordiag: 
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | exitcode: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | exitmsg: OK
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | cpuconsumptiontime: 31800 s
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | nevents: 400
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | neventsw: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | pid: 22519
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | pgrp: 22519
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | corecount: 8
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | event service: False
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | sizes: {0: 2426824, 6: 2427030, 11: 2427058, 5257: 2453249, 5259: 2462218, 5262: 2462274, 5271: 2462572}
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | --------------------------------------------------
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | 
[2025-04-18 23:29:28] 2025-04-19 03:29:08,075 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-04-18 23:29:28] 2025-04-19 03:29:08,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 23:29:28] 2025-04-19 03:29:08,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 23:29:28] 2025-04-19 03:29:08,099 | INFO     | job 6606995317 has completed (purged errors)
[2025-04-18 23:29:28] 2025-04-19 03:29:08,099 | INFO     | overall cleanup function is called
[2025-04-18 23:29:28] 2025-04-19 03:29:09,106 | INFO     | --- collectZombieJob: --- 10, [22519]
[2025-04-18 23:29:28] 2025-04-19 03:29:09,106 | INFO     | zombie collector waiting for pid 22519
[2025-04-18 23:29:28] 2025-04-19 03:29:09,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 23:29:28] 2025-04-19 03:29:09,107 | INFO     | collected zombie processes
[2025-04-18 23:29:28] 2025-04-19 03:29:09,107 | INFO     | will attempt to kill all subprocesses of pid=22519
[2025-04-18 23:29:28] 2025-04-19 03:29:09,454 | INFO     | process IDs to be killed: [22519] (in reverse order)
[2025-04-18 23:29:28] 2025-04-19 03:29:09,637 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 23:29:28] 2025-04-19 03:29:09,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 23:29:28] 2025-04-19 03:29:09,654 | INFO     | did not find any defunct processes belonging to 22519
[2025-04-18 23:29:28] 2025-04-19 03:29:09,671 | INFO     | did not find any defunct processes belonging to 22519
[2025-04-18 23:29:28] 2025-04-19 03:29:09,671 | INFO     | ready for new job
[2025-04-18 23:29:28] 2025-04-19 03:29:09,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 23:29:28] 2025-04-19 03:29:09,672 | INFO     | **************************************
[2025-04-18 23:29:28] 2025-04-19 03:29:09,673 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 23:29:28] 2025-04-19 03:29:09,673 | INFO     | **************************************
[2025-04-18 23:29:28] 2025-04-19 03:29:09,673 | INFO     | 
[2025-04-18 23:29:28] 2025-04-19 03:29:09,676 | INFO     | architecture information:
[2025-04-18 23:29:28] 2025-04-19 03:29:09,679 | INFO     | executing command: cat /etc/os-release
[2025-04-18 23:29:28] 2025-04-19 03:29:09,706 | INFO     | cat /etc/os-release:
[2025-04-18 23:29:28] NAME="CentOS Linux"
[2025-04-18 23:29:28] VERSION="7 (Core)"
[2025-04-18 23:29:28] ID="centos"
[2025-04-18 23:29:28] ID_LIKE="rhel fedora"
[2025-04-18 23:29:28] VERSION_ID="7"
[2025-04-18 23:29:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 23:29:28] ANSI_COLOR="0;31"
[2025-04-18 23:29:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 23:29:28] HOME_URL="https://www.centos.org/"
[2025-04-18 23:29:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 23:29:28] 
[2025-04-18 23:29:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 23:29:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 23:29:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 23:29:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 23:29:28] 
[2025-04-18 23:29:28] 2025-04-19 03:29:09,706 | INFO     | **************************************
[2025-04-18 23:29:28] 2025-04-19 03:29:09,757 | INFO     | 5292s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-18 23:29:28] 2025-04-19 03:29:10,209 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-04-18 23:29:28] 2025-04-19 03:29:10,227 | INFO     | sufficient remaining disk space (91075117056 B)
[2025-04-18 23:29:28] 2025-04-19 03:29:10,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 23:29:28] 2025-04-19 03:29:10,228 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 23:29:28] 2025-04-19 03:29:10,228 | INFO     | update_server=False
[2025-04-18 23:29:28] 2025-04-19 03:29:10,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 23:29:28] 2025-04-19 03:29:10,409 | INFO     | all data control threads have been joined
[2025-04-18 23:29:28] 2025-04-19 03:29:10,467 | INFO     | all payload control threads have been joined
[2025-04-18 23:29:28] 2025-04-19 03:29:10,764 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 23:29:28] 2025-04-19 03:29:10,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 23:29:28] 2025-04-19 03:29:10,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 23:29:28] 2025-04-19 03:29:10,858 | INFO     | all job control threads have been joined
[2025-04-18 23:29:28] 2025-04-19 03:29:11,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 23:29:28] 2025-04-19 03:29:11,155 | INFO     | aborting loop
[2025-04-18 23:29:28] 2025-04-19 03:29:11,233 | INFO     | [job] retrieve thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:11,414 | INFO     | [data] control thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:11,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 23:29:28] 2025-04-19 03:29:11,450 | INFO     | [payload] failed_post thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:11,472 | INFO     | [payload] control thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:11,535 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:11,864 | INFO     | [job] control thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,027 | INFO     | [job] validate thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,160 | INFO     | [job] job monitor thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,224 | INFO     | [data] copytool_in thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,341 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,453 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,732 | INFO     | [payload] validate_post thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:12,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 23:29:28] 2025-04-19 03:29:13,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 23:29:28] 2025-04-19 03:29:13,434 | INFO     | [data] copytool_out thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:13,884 | INFO     | [job] queue monitor thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:17,406 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:21,076 | INFO     | job.realtimelogging is not enabled
[2025-04-18 23:29:28] 2025-04-19 03:29:22,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 23:29:28] 2025-04-19 03:29:22,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140355827520)>', '<ExcThread(monitor, started 140139472873216)>']
[2025-04-18 23:29:28] 2025-04-19 03:29:23,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 23:29:28] 2025-04-19 03:29:23,831 | INFO     | [monitor] control thread has ended
[2025-04-18 23:29:28] 2025-04-19 03:29:27,897 | INFO     | all workflow threads have been joined
[2025-04-18 23:29:28] 2025-04-19 03:29:27,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 23:29:28] 2025-04-19 03:29:27,897 | INFO     | traces error code: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:27,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 23:29:28] 2025-04-19 03:29:28,039 [wrapper] ==== pilot stdout END ====
[2025-04-18 23:29:28] 2025-04-19 03:29:28,045 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 23:29:28] 2025-04-19 03:29:28,050 [wrapper] pilotpid: 41000
[2025-04-18 23:29:28] 2025-04-19 03:29:28,056 [wrapper] Pilot exit status: 0
[2025-04-18 23:29:28] 2025-04-19 03:29:28,093 [wrapper] pandaids: 6606995317
[2025-04-18 23:29:28] 2025-04-19 03:29:28,179 [wrapper] cleanup supervisor_pilot 97607 41001
[2025-04-18 23:29:28] 2025-04-19 03:29:28,184 [wrapper] Test setup, not cleaning
[2025-04-18 23:29:28] 2025-04-19 03:29:28,195 [wrapper] apfmon messages muted
[2025-04-18 23:29:28] 2025-04-19 03:29:28,200 [wrapper] ==== wrapper stdout END ====
[2025-04-18 23:29:28] 2025-04-19 03:29:28,208 [wrapper] ==== wrapper stderr END ====
[2025-04-18 23:29:28]  *** Error codes and diagnostics ***
[2025-04-18 23:29:28]     "exeErrorCode": 0,
[2025-04-18 23:29:28]     "exeErrorDiag": "",
[2025-04-18 23:29:28]     "pilotErrorCode": 0,
[2025-04-18 23:29:28]     "pilotErrorDiag": "",
[2025-04-18 23:29:28]  *** Listing of results directory ***
[2025-04-18 23:29:28] total 418804
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 19:06 pilot3.tar.gz
[2025-04-18 23:29:28] -rwx------ 1 boincer umatlas     37140 Apr 18 19:25 runpilot2-wrapper.sh
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 19:25 queuedata.json
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas       100 Apr 18 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 23:29:28] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 22:00 run_atlas
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas       105 Apr 18 22:00 job.xml
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas 223951762 Apr 18 22:00 EVNT.44075481._002901.pool.root.1
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 22:00 start_atlas.sh
[2025-04-18 23:29:28] drwxrwx--x 2 boincer umatlas      4096 Apr 18 22:00 shared
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas    508893 Apr 18 22:00 input.tar.gz
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas         0 Apr 18 22:00 boinc_lockfile
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 22:00 pandaJob.out
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas       424 Apr 18 22:00 setup.sh.local
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas    991292 Apr 18 22:00 agis_schedconf.cvmfs.json
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas   1618536 Apr 18 22:00 agis_ddmendpoints.agis.ALL.json
[2025-04-18 23:29:28] drwx------ 4 boincer umatlas      4096 Apr 18 22:00 pilot3
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas       529 Apr 18 23:28 boinc_task_state.xml
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas 199376722 Apr 18 23:28 HITS.44075483._074733.pool.root.1
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas      6301 Apr 18 23:28 init_data.xml
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas      1074 Apr 18 23:28 memory_monitor_summary.json
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas    319258 Apr 18 23:28 log.44075483._074733.job.log.tgz.1
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas        95 Apr 18 23:29 pilot_heartbeat.json
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas      7746 Apr 18 23:29 heartbeat.json
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas      4540 Apr 18 23:29 pilotlog.txt
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 23:29 boinc_mmap_file
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas        27 Apr 18 23:29 wrapper_checkpoint.txt
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas    514036 Apr 18 23:29 log.44075483._074733.job.log.1
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas       357 Apr 18 23:29 output.list
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas       620 Apr 18 23:29 runtime_log
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas    849920 Apr 18 23:29 result.tar.gz
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas       659 Apr 18 23:29 TA9KDmRGAQ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmnl5KDmSwqRxn.diag
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas     11013 Apr 18 23:29 runtime_log.err
[2025-04-18 23:29:28] -rw-r--r-- 1 boincer umatlas     21571 Apr 18 23:29 stderr.txt
[2025-04-18 23:29:28] HITS file was successfully produced:
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas 199376722 Apr 18 23:28 shared/HITS.pool.root.1
[2025-04-18 23:29:28]  *** Contents of shared directory: ***
[2025-04-18 23:29:28] total 414764
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas 223951762 Apr 18 22:00 ATLAS.root_0
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 22:00 start_atlas.sh
[2025-04-18 23:29:28] -rw-r--r-- 2 boincer umatlas    508893 Apr 18 22:00 input.tar.gz
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas 199376722 Apr 18 23:28 HITS.pool.root.1
[2025-04-18 23:29:28] -rw------- 1 boincer umatlas    849920 Apr 18 23:29 result.tar.gz
23:29:30 (5801): run_atlas exited; CPU time 31642.695732
23:29:30 (5801): called boinc_finish(0)

</stderr_txt>
]]>

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