Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:33:59 (1257819): wrapper (7.7.26015): starting
14:33:59 (1257819): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 14:33:59] Arguments: --nthreads 3
[2025-04-19 14:33:59] Threads: 3
[2025-04-19 14:33:59] Checking for CVMFS
[2025-04-19 14:33:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 14:33:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 14:33:59] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 14:33:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 14:33:59] 2.9.2.0 2988 4336 82588 145038 1 56 21626782 36864001 0 130560 0 3223245 99.991 1029854 6585 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 14:33:59] CVMFS is ok
[2025-04-19 14:33:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 14:33:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 14:33:59] Further information can be found at the LHC@home message board.
[2025-04-19 14:33:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 14:33:59] Checking for apptainer binary...
[2025-04-19 14:33:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 14:33:59] Running /usr/bin/apptainer --version
[2025-04-19 14:33:59] apptainer version 1.3.6-6.1
[2025-04-19 14:33:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 14:33:59] legendA257a
[2025-04-19 14:33:59] apptainer works
[2025-04-19 14:33:59] Set ATHENA_PROC_NUMBER=3
[2025-04-19 14:33:59] Set ATHENA_CORE_NUMBER=3
[2025-04-19 14:33:59] Starting ATLAS job with PandaID=6606968369
[2025-04-19 14:33:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 16:01:04]  *** The last 200 lines of the pilot log: ***
[2025-04-19 16:01:04]  filetype=log
[2025-04-19 16:01:04]  guid=39bacf4d-5b12-4f44-8998-4c67e7804cab
[2025-04-19 16:01:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 16:01:04]  is_altstaged=None
[2025-04-19 16:01:04]  is_tar=False
[2025-04-19 16:01:04]  lfn=log.44075483._074415.job.log.tgz.1
[2025-04-19 16:01:04]  mtime=0
[2025-04-19 16:01:04]  protocol_id=None
[2025-04-19 16:01:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 16:01:04]  replicas=None
[2025-04-19 16:01:04]  scope=mc23_13p6TeV
[2025-04-19 16:01:04]  status=None
[2025-04-19 16:01:04]  status_code=0
[2025-04-19 16:01:04]  storage_token=
[2025-04-19 16:01:04]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6606968369/log.44075483._074415.job.log.tgz.1
[2025-04-19 16:01:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/3c/log.44075483._074415.job.log.tgz.1
[2025-04-19 16:01:04]  workdir=None
[2025-04-19 16:01:04] ]
[2025-04-19 16:01:04] 2025-04-19 14:00:42,595 | INFO     | transferring file log.44075483._074415.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6606968369/log.44075483._074415.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 16:01:04] 2025-04-19 14:00:42,595 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6606968369/log.44075483._074415.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0744
[2025-04-19 16:01:04] 2025-04-19 14:00:42,610 | INFO     | adding to output.list: log.44075483._074415.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/3c/log.44075483._074415.job.log.tg
[2025-04-19 16:01:04] 2025-04-19 14:00:42,610 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 16:01:04] 2025-04-19 14:00:42,611 | INFO     | summary of transferred files:
[2025-04-19 16:01:04] 2025-04-19 14:00:42,611 | INFO     |  -- lfn=log.44075483._074415.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 16:01:04] 2025-04-19 14:00:42,611 | INFO     | stage-out finished correctly
[2025-04-19 16:01:04] 2025-04-19 14:00:44,064 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 16:01:04] 2025-04-19 14:00:44,158 | INFO     | PID=1261468 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-19 16:01:04] 2025-04-19 14:00:46,649 | INFO     | job 6606968369 has state=finished
[2025-04-19 16:01:04] 2025-04-19 14:00:46,649 | INFO     | preparing for final server update for job 6606968369 in state='finished'
[2025-04-19 16:01:04] 2025-04-19 14:00:46,649 | INFO     | this job has now completed (state=finished)
[2025-04-19 16:01:04] 2025-04-19 14:00:46,649 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 16:01:04] 2025-04-19 14:00:46,650 | INFO     | log transfer has been attempted: DONE
[2025-04-19 16:01:04] 2025-04-19 14:00:46,650 | INFO     | job 6606968369 has finished - writing final server update
[2025-04-19 16:01:04] 2025-04-19 14:00:46,650 | INFO     | total number of processed events: 400 (read)
[2025-04-19 16:01:04] 2025-04-19 14:00:46,652 | INFO     | executing command: lscpu
[2025-04-19 16:01:04] 2025-04-19 14:00:46,670 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 16:01:04] 2025-04-19 14:00:47,924 | WARNING  | process 1267904 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 16:01:04] 2025-04-19 14:00:47,925 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606968369/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 16:01:04] 2025-04-19 14:00:47,972 | INFO     | number of running child processes to parent process 1267904: 1
[2025-04-19 16:01:04] 2025-04-19 14:00:47,972 | INFO     | maximum number of monitored processes: 6
[2025-04-19 16:01:04] 2025-04-19 14:00:50,338 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 16:01:04] 2025-04-19 14:00:50,338 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606968369/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 16:01:04] 2025-04-19 14:00:50,339 | INFO     | extracted standard info from prmon json
[2025-04-19 16:01:04] 2025-04-19 14:00:50,339 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 16:01:04] 2025-04-19 14:00:50,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 16:01:04] 2025-04-19 14:00:50,339 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 16:01:04] 2025-04-19 14:00:50,339 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | fitting pss+swap vs Time
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | sum of square deviations: 147126479.5
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | sum of deviations: -2142847161.9999976
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | mean x: 1745068718.5
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | mean y: 2431020.282051282
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | -- intersect: 25418763713.35582
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | intersect: 25418763713.35582
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | chi2: 1.228601393402622
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | -- intersect: 25418763713.35582
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | current memory leak: -14.56 B/s (using 78 data points, chi2=1.23)
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | ..............................
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . Timing measurements:
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . get job = 0 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . initial setup = 1 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . payload setup = 3 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . stage-in = 0 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,340 | INFO     | . payload execution = 5176 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,341 | INFO     | . stage-out = 0 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,341 | INFO     | . log creation = 0 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,341 | INFO     | ..............................
[2025-04-19 16:01:04] 2025-04-19 14:00:50,800 | INFO     | 
[2025-04-19 16:01:04] 2025-04-19 14:00:50,800 | INFO     | job summary report
[2025-04-19 16:01:04] 2025-04-19 14:00:50,800 | INFO     | --------------------------------------------------
[2025-04-19 16:01:04] 2025-04-19 14:00:50,800 | INFO     | PanDA job id: 6606968369
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | task id: 44075483
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | errors: (none)
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | pilot state: finished 
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | transexitcode: 0
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | exeerrorcode: 0
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | exeerrordiag: 
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | exitcode: 0
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | exitmsg: OK
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | cpuconsumptiontime: 13675 s
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | nevents: 400
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | neventsw: 0
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | pid: 1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | pgrp: 1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | corecount: 3
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | event service: False
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | sizes: {0: 2426826, 3: 2427032, 11: 2427060, 5183: 2453476, 5184: 2462423, 5186: 2462479, 5192: 2462777}
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | --------------------------------------------------
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | 
[2025-04-19 16:01:04] 2025-04-19 14:00:50,801 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,820 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 16:01:04] 2025-04-19 14:00:50,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 16:01:04] 2025-04-19 14:00:50,820 | INFO     | job 6606968369 has completed (purged errors)
[2025-04-19 16:01:04] 2025-04-19 14:00:50,820 | INFO     | overall cleanup function is called
[2025-04-19 16:01:04] 2025-04-19 14:00:51,826 | INFO     | --- collectZombieJob: --- 10, [1267904]
[2025-04-19 16:01:04] 2025-04-19 14:00:51,826 | INFO     | zombie collector waiting for pid 1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:51,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 16:01:04] 2025-04-19 14:00:51,827 | INFO     | collected zombie processes
[2025-04-19 16:01:04] 2025-04-19 14:00:51,827 | INFO     | will attempt to kill all subprocesses of pid=1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:51,877 | INFO     | process IDs to be killed: [1267904] (in reverse order)
[2025-04-19 16:01:04] 2025-04-19 14:00:51,905 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 16:01:04] 2025-04-19 14:00:51,906 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 16:01:04] 2025-04-19 14:00:51,907 | INFO     | did not find any defunct processes belonging to 1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:51,908 | INFO     | did not find any defunct processes belonging to 1267904
[2025-04-19 16:01:04] 2025-04-19 14:00:51,908 | INFO     | ready for new job
[2025-04-19 16:01:04] 2025-04-19 14:00:51,908 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 16:01:04] 2025-04-19 14:00:51,909 | INFO     | **************************************
[2025-04-19 16:01:04] 2025-04-19 14:00:51,909 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 16:01:04] 2025-04-19 14:00:51,909 | INFO     | **************************************
[2025-04-19 16:01:04] 2025-04-19 14:00:51,909 | INFO     | 
[2025-04-19 16:01:04] 2025-04-19 14:00:51,910 | INFO     | architecture information:
[2025-04-19 16:01:04] 2025-04-19 14:00:51,910 | INFO     | executing command: cat /etc/os-release
[2025-04-19 16:01:04] 2025-04-19 14:00:51,919 | INFO     | cat /etc/os-release:
[2025-04-19 16:01:04] NAME="CentOS Linux"
[2025-04-19 16:01:04] VERSION="7 (Core)"
[2025-04-19 16:01:04] ID="centos"
[2025-04-19 16:01:04] ID_LIKE="rhel fedora"
[2025-04-19 16:01:04] VERSION_ID="7"
[2025-04-19 16:01:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 16:01:04] ANSI_COLOR="0;31"
[2025-04-19 16:01:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 16:01:04] HOME_URL="https://www.centos.org/"
[2025-04-19 16:01:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 16:01:04] 
[2025-04-19 16:01:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 16:01:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 16:01:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 16:01:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 16:01:04] 
[2025-04-19 16:01:04] 2025-04-19 14:00:51,919 | INFO     | **************************************
[2025-04-19 16:01:04] 2025-04-19 14:00:52,422 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | INFO     | sufficient remaining disk space (378696368128 B)
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | INFO     | update_server=False
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 16:01:04] 2025-04-19 14:00:52,436 | INFO     | aborting loop
[2025-04-19 16:01:04] 2025-04-19 14:00:52,437 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 16:01:04] 2025-04-19 14:00:52,437 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 16:01:04] 2025-04-19 14:00:52,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 16:01:04] 2025-04-19 14:00:52,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 16:01:04] 2025-04-19 14:00:53,095 | INFO     | all payload control threads have been joined
[2025-04-19 16:01:04] 2025-04-19 14:00:53,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 16:01:04] 2025-04-19 14:00:53,441 | INFO     | all data control threads have been joined
[2025-04-19 16:01:04] 2025-04-19 14:00:53,442 | INFO     | [job] retrieve thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:53,442 | INFO     | [job] job monitor thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:53,486 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:53,837 | INFO     | all job control threads have been joined
[2025-04-19 16:01:04] 2025-04-19 14:00:53,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,100 | INFO     | [payload] control thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,146 | INFO     | [payload] validate_post thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,447 | INFO     | [data] control thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 16:01:04] 2025-04-19 14:00:54,611 | INFO     | [data] copytool_in thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,843 | INFO     | [payload] failed_post thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,843 | INFO     | [job] control thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,844 | INFO     | [job] validate thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,908 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:54,913 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:55,164 | INFO     | [data] copytool_out thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:55,384 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 16:01:04] 2025-04-19 14:00:56,390 | INFO     | [job] queue monitor thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:58,614 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 16:01:04] 2025-04-19 14:00:59,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556018239296)>', '<ExcThread(monitor, started 140555052889856)>']
[2025-04-19 16:01:04] 2025-04-19 14:00:59,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 16:01:04] 2025-04-19 14:00:59,474 | INFO     | [monitor] control thread has ended
[2025-04-19 16:01:04] 2025-04-19 14:01:04,409 | INFO     | all workflow threads have been joined
[2025-04-19 16:01:04] 2025-04-19 14:01:04,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 16:01:04] 2025-04-19 14:01:04,410 | INFO     | traces error code: 0
[2025-04-19 16:01:04] 2025-04-19 14:01:04,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 16:01:04] 2025-04-19 14:01:04,463 [wrapper] ==== pilot stdout END ====
[2025-04-19 16:01:04] 2025-04-19 14:01:04,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 16:01:04] 2025-04-19 14:01:04,468 [wrapper] pilotpid: 1261468
[2025-04-19 16:01:04] 2025-04-19 14:01:04,471 [wrapper] Pilot exit status: 0
[2025-04-19 16:01:04] 2025-04-19 14:01:04,478 [wrapper] pandaids: 6606968369
[2025-04-19 16:01:04] 2025-04-19 14:01:04,497 [wrapper] cleanup supervisor_pilot 1279845 1261469
[2025-04-19 16:01:04] 2025-04-19 14:01:04,500 [wrapper] Test setup, not cleaning
[2025-04-19 16:01:04] 2025-04-19 14:01:04,502 [wrapper] apfmon messages muted
[2025-04-19 16:01:04] 2025-04-19 14:01:04,505 [wrapper] ==== wrapper stdout END ====
[2025-04-19 16:01:04] 2025-04-19 14:01:04,507 [wrapper] ==== wrapper stderr END ====
[2025-04-19 16:01:04]  *** Error codes and diagnostics ***
[2025-04-19 16:01:04]     "exeErrorCode": 0,
[2025-04-19 16:01:04]     "exeErrorDiag": "",
[2025-04-19 16:01:04]     "pilotErrorCode": 0,
[2025-04-19 16:01:04]     "pilotErrorDiag": "",
[2025-04-19 16:01:04]  *** Listing of results directory ***
[2025-04-19 16:01:04] total 412684
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc    495897 Apr 19 00:32 pilot3.tar.gz
[2025-04-19 16:01:04] -rwx------ 1 boinc boinc     37140 Apr 19 00:36 runpilot2-wrapper.sh
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc      5111 Apr 19 00:36 queuedata.json
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc       100 Apr 19 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 16:01:04] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 14:33 run_atlas
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc       105 Apr 19 14:33 job.xml
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc 226555077 Apr 19 14:33 EVNT.44075481._002889.pool.root.1
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc      6933 Apr 19 14:33 init_data.xml
[2025-04-19 16:01:04] drwxrwx--x 2 boinc boinc      4096 Apr 19 14:33 shared
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc    508892 Apr 19 14:33 input.tar.gz
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc     17569 Apr 19 14:33 start_atlas.sh
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc         0 Apr 19 14:33 boinc_lockfile
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc      2578 Apr 19 14:33 pandaJob.out
[2025-04-19 16:01:04] -rw------- 1 boinc boinc       424 Apr 19 14:33 setup.sh.local
[2025-04-19 16:01:04] -rw------- 1 boinc boinc    991292 Apr 19 14:34 agis_schedconf.cvmfs.json
[2025-04-19 16:01:04] -rw------- 1 boinc boinc   1618536 Apr 19 14:34 agis_ddmendpoints.agis.ALL.json
[2025-04-19 16:01:04] drwx------ 4 boinc boinc      4096 Apr 19 14:34 pilot3
[2025-04-19 16:01:04] -rw------- 1 boinc boinc 190691327 Apr 19 16:00 HITS.44075483._074415.pool.root.1
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc       529 Apr 19 16:00 boinc_task_state.xml
[2025-04-19 16:01:04] -rw------- 1 boinc boinc        95 Apr 19 16:00 pilot_heartbeat.json
[2025-04-19 16:01:04] -rw------- 1 boinc boinc      1015 Apr 19 16:00 memory_monitor_summary.json
[2025-04-19 16:01:04] -rw------- 1 boinc boinc    233359 Apr 19 16:00 log.44075483._074415.job.log.tgz.1
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc      8192 Apr 19 16:00 boinc_mmap_file
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc        27 Apr 19 16:00 wrapper_checkpoint.txt
[2025-04-19 16:01:04] -rw------- 1 boinc boinc      7656 Apr 19 16:00 heartbeat.json
[2025-04-19 16:01:04] -rw------- 1 boinc boinc      4480 Apr 19 16:01 pilotlog.txt
[2025-04-19 16:01:04] -rw------- 1 boinc boinc    502474 Apr 19 16:01 log.44075483._074415.job.log.1
[2025-04-19 16:01:04] -rw------- 1 boinc boinc       357 Apr 19 16:01 output.list
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc       620 Apr 19 16:01 runtime_log
[2025-04-19 16:01:04] -rw------- 1 boinc boinc    757760 Apr 19 16:01 result.tar.gz
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc     11124 Apr 19 16:01 runtime_log.err
[2025-04-19 16:01:04] -rw------- 1 boinc boinc       663 Apr 19 16:01 BnbNDmPV9P7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmnh5KDmS0hB1m.diag
[2025-04-19 16:01:04] -rw-r--r-- 1 boinc boinc     21329 Apr 19 16:01 stderr.txt
[2025-04-19 16:01:04] HITS file was successfully produced:
[2025-04-19 16:01:04] -rw------- 1 boinc boinc 190691327 Apr 19 16:00 shared/HITS.pool.root.1
[2025-04-19 16:01:04]  *** Contents of shared directory: ***
[2025-04-19 16:01:04] total 408740
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc 226555077 Apr 19 14:33 ATLAS.root_0
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc    508892 Apr 19 14:33 input.tar.gz
[2025-04-19 16:01:04] -rw-r--r-- 2 boinc boinc     17569 Apr 19 14:33 start_atlas.sh
[2025-04-19 16:01:04] -rw------- 1 boinc boinc 190691327 Apr 19 16:00 HITS.pool.root.1
[2025-04-19 16:01:04] -rw------- 1 boinc boinc    757760 Apr 19 16:01 result.tar.gz
16:01:05 (1257819): run_atlas exited; CPU time 13697.540977
16:01:05 (1257819): called boinc_finish(0)

</stderr_txt>
]]>

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