Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:54:01 (23743): wrapper (7.7.26015): starting
20:54:01 (23743): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 20:54:01] Arguments: --nthreads 8
[2025-04-18 20:54:01] Threads: 8
[2025-04-18 20:54:01] Checking for CVMFS
[2025-04-18 20:54:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 20:54:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 20:54:01] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 20:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 20:54:01] 2.11.2.0 2699 161160 126256 145020 2 58 14185672 20275200 1 130560 0 19641567 99.951 8946546 44743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 20:54:01] CVMFS is ok
[2025-04-18 20:54:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 20:54:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 20:54:01] Further information can be found at the LHC@home message board.
[2025-04-18 20:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 20:54:01] Checking for apptainer binary...
[2025-04-18 20:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 20:54:01] Running /usr/bin/apptainer --version
[2025-04-18 20:54:01] apptainer version 1.3.2-1.el7
[2025-04-18 20:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 20:54:03] c-204-21.aglt2.org
[2025-04-18 20:54:03] apptainer works
[2025-04-18 20:54:03] Set ATHENA_PROC_NUMBER=8
[2025-04-18 20:54:03] Set ATHENA_CORE_NUMBER=8
[2025-04-18 20:54:03] Starting ATLAS job with PandaID=6606935148
[2025-04-18 20:54:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:49:57 (32279): wrapper (7.7.26015): starting
22:49:57 (32279): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 22:49:57] Arguments: --nthreads 8
[2025-04-18 22:49:57] Threads: 8
[2025-04-18 22:49:57] This job has been restarted, cleaning up previous attempt
[2025-04-18 22:49:57] Checking for CVMFS
[2025-04-18 22:49:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 22:49:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 22:49:57] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 22:49:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 22:49:58] 2.11.2.0 2699 161276 125916 145023 2 38 14300018 20275200 1 130560 0 19728356 99.951 8976594 44748 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 22:49:58] CVMFS is ok
[2025-04-18 22:49:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 22:49:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 22:49:58] Further information can be found at the LHC@home message board.
[2025-04-18 22:49:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 22:49:58] Checking for apptainer binary...
[2025-04-18 22:49:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 22:49:58] Running /usr/bin/apptainer --version
[2025-04-18 22:49:58] apptainer version 1.3.2-1.el7
[2025-04-18 22:49:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 22:49:59] c-204-21.aglt2.org
[2025-04-18 22:49:59] apptainer works
[2025-04-18 22:49:59] Set ATHENA_PROC_NUMBER=8
[2025-04-18 22:49:59] Set ATHENA_CORE_NUMBER=8
[2025-04-18 22:49:59] Starting ATLAS job with PandaID=6606935148
[2025-04-18 22:49:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 01:01:53]  *** The last 200 lines of the pilot log: ***
[2025-04-19 01:01:53] 2025-04-19 05:01:31,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:01:53] 2025-04-19 05:01:31,667 | INFO     | PID=4520 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-19 01:01:53] 2025-04-19 05:01:33,516 | INFO     | monitor loop #582: job 0:6606935148 is in state 'finished'
[2025-04-19 01:01:53] 2025-04-19 05:01:33,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,868 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-19 01:01:53] 2025-04-19 05:01:33,869 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606935148/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,870 | INFO     | extracted standard info from prmon json
[2025-04-19 01:01:53] 2025-04-19 05:01:33,871 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 01:01:53] 2025-04-19 05:01:33,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 01:01:53] 2025-04-19 05:01:33,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 01:01:53] 2025-04-19 05:01:33,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 01:01:53] 2025-04-19 05:01:33,875 | INFO     | fitting pss+swap vs Time
[2025-04-19 01:01:53] 2025-04-19 05:01:33,875 | INFO     | sum of square deviations: 665612480.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,876 | INFO     | sum of deviations: 12605780112.999998
[2025-04-19 01:01:53] 2025-04-19 05:01:33,876 | INFO     | mean x: 1745034952.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,876 | INFO     | mean y: 2451191.8294573645
[2025-04-19 01:01:53] 2025-04-19 05:01:33,876 | INFO     | -- intersect: -33046098159.906715
[2025-04-19 01:01:53] 2025-04-19 05:01:33,876 | INFO     | intersect: -33046098159.906715
[2025-04-19 01:01:53] 2025-04-19 05:01:33,877 | INFO     | chi2: 3.345646803745236
[2025-04-19 01:01:53] 2025-04-19 05:01:33,877 | INFO     | sum of square deviations: 591173875.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | sum of deviations: 20859569149.999992
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | mean x: 1745034799.5
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | mean y: 2467527.2419354836
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | -- intersect: -61571082334.59292
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | intersect: -61571082334.59292
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | chi2: 2.524241114126906
[2025-04-19 01:01:53] 2025-04-19 05:01:33,878 | INFO     | current chi2=2.524241114126906 (change=24.551476524623556 %)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,879 | INFO     | right removable region: 123
[2025-04-19 01:01:53] 2025-04-19 05:01:33,879 | INFO     | sum of square deviations: 591173875.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,879 | INFO     | sum of deviations: -17060203975.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | mean x: 1745035104.5
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | mean y: 2511660.4516129033
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | -- intersect: 50361054358.74903
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | intersect: 50361054358.74903
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | chi2: 1.0882564652961846
[2025-04-19 01:01:53] 2025-04-19 05:01:33,880 | INFO     | current chi2=1.0882564652961846 (change=67.47246409639082 %)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,881 | INFO     | sum of square deviations: 522502820.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,881 | INFO     | sum of deviations: -20595966190.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,881 | INFO     | mean x: 1745035257.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,881 | INFO     | mean y: 2519285.2268907563
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | -- intersect: 68788152161.86853
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | intersect: 68788152161.86853
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | chi2: 0.9886214369406461
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | current chi2=0.9886214369406461 (change=9.155473138257111 %)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | left removable region: 20
[2025-04-19 01:01:53] 2025-04-19 05:01:33,882 | INFO     | sum of square deviations: 338804492.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,883 | INFO     | sum of deviations: -3979785546.0000014
[2025-04-19 01:01:53] 2025-04-19 05:01:33,883 | INFO     | mean x: 1745035379.0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,883 | INFO     | mean y: 2518661.7669902914
[2025-04-19 01:01:53] 2025-04-19 05:01:33,883 | INFO     | -- intersect: 20500672442.451912
[2025-04-19 01:01:53] 2025-04-19 05:01:33,883 | INFO     | intersect: 20500672442.451912
[2025-04-19 01:01:53] 2025-04-19 05:01:33,884 | INFO     | chi2: 0.06223252249851559
[2025-04-19 01:01:53] 2025-04-19 05:01:33,884 | INFO     | -- intersect: 20500672442.451912
[2025-04-19 01:01:53] 2025-04-19 05:01:33,884 | INFO     | current memory leak: -11.75 B/s (using 103 data points, chi2=0.06)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | ..............................
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . Timing measurements:
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . get job = 0 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . initial setup = 1 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . payload setup = 9 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . stage-in = 0 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,885 | INFO     | . payload execution = 7840 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,886 | INFO     | . stage-out = 2 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,886 | INFO     | . log creation = 0 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,886 | INFO     | ..............................
[2025-04-19 01:01:53] 2025-04-19 05:01:33,992 | INFO     | 
[2025-04-19 01:01:53] 2025-04-19 05:01:33,993 | INFO     | job summary report
[2025-04-19 01:01:53] 2025-04-19 05:01:33,993 | INFO     | --------------------------------------------------
[2025-04-19 01:01:53] 2025-04-19 05:01:33,993 | INFO     | PanDA job id: 6606935148
[2025-04-19 01:01:53] 2025-04-19 05:01:33,993 | INFO     | task id: 44075483
[2025-04-19 01:01:53] 2025-04-19 05:01:33,993 | INFO     | errors: (none)
[2025-04-19 01:01:53] 2025-04-19 05:01:33,994 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 01:01:53] 2025-04-19 05:01:33,994 | INFO     | pilot state: finished 
[2025-04-19 01:01:53] 2025-04-19 05:01:33,994 | INFO     | transexitcode: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,994 | INFO     | exeerrorcode: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,994 | INFO     | exeerrordiag: 
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | exitcode: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | exitmsg: OK
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | cpuconsumptiontime: 57269 s
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | nevents: 400
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | neventsw: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:33,995 | INFO     | pid: 10965
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | pgrp: 10965
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | corecount: 8
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | event service: False
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | sizes: {0: 2426652, 1: 2426851, 7: 2427057, 11: 2427085, 7853: 2454545, 7854: 2454544, 7856: 2463725, 7862: 2463839}
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | --------------------------------------------------
[2025-04-19 01:01:53] 2025-04-19 05:01:33,996 | INFO     | 
[2025-04-19 01:01:53] 2025-04-19 05:01:33,997 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-19 01:01:53] 2025-04-19 05:01:34,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,026 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 01:01:53] 2025-04-19 05:01:34,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 01:01:53] 2025-04-19 05:01:34,030 | INFO     | job 6606935148 has completed (purged errors)
[2025-04-19 01:01:53] 2025-04-19 05:01:34,030 | INFO     | overall cleanup function is called
[2025-04-19 01:01:53] 2025-04-19 05:01:35,038 | INFO     | --- collectZombieJob: --- 10, [10965]
[2025-04-19 01:01:53] 2025-04-19 05:01:35,038 | INFO     | zombie collector waiting for pid 10965
[2025-04-19 01:01:53] 2025-04-19 05:01:35,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 01:01:53] 2025-04-19 05:01:35,039 | INFO     | collected zombie processes
[2025-04-19 01:01:53] 2025-04-19 05:01:35,039 | INFO     | will attempt to kill all subprocesses of pid=10965
[2025-04-19 01:01:53] 2025-04-19 05:01:35,135 | INFO     | process IDs to be killed: [10965] (in reverse order)
[2025-04-19 01:01:53] 2025-04-19 05:01:35,196 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 01:01:53] 2025-04-19 05:01:35,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 01:01:53] 2025-04-19 05:01:35,201 | INFO     | did not find any defunct processes belonging to 10965
[2025-04-19 01:01:53] 2025-04-19 05:01:35,205 | INFO     | did not find any defunct processes belonging to 10965
[2025-04-19 01:01:53] 2025-04-19 05:01:35,205 | INFO     | ready for new job
[2025-04-19 01:01:53] 2025-04-19 05:01:35,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 01:01:53] 2025-04-19 05:01:35,208 | INFO     | **************************************
[2025-04-19 01:01:53] 2025-04-19 05:01:35,208 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 01:01:53] 2025-04-19 05:01:35,208 | INFO     | **************************************
[2025-04-19 01:01:53] 2025-04-19 05:01:35,208 | INFO     | 
[2025-04-19 01:01:53] 2025-04-19 05:01:35,209 | INFO     | architecture information:
[2025-04-19 01:01:53] 2025-04-19 05:01:35,210 | INFO     | executing command: cat /etc/os-release
[2025-04-19 01:01:53] 2025-04-19 05:01:35,228 | INFO     | cat /etc/os-release:
[2025-04-19 01:01:53] NAME="CentOS Linux"
[2025-04-19 01:01:53] VERSION="7 (Core)"
[2025-04-19 01:01:53] ID="centos"
[2025-04-19 01:01:53] ID_LIKE="rhel fedora"
[2025-04-19 01:01:53] VERSION_ID="7"
[2025-04-19 01:01:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 01:01:53] ANSI_COLOR="0;31"
[2025-04-19 01:01:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 01:01:53] HOME_URL="https://www.centos.org/"
[2025-04-19 01:01:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 01:01:53] 
[2025-04-19 01:01:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 01:01:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 01:01:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 01:01:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 01:01:53] 
[2025-04-19 01:01:53] 2025-04-19 05:01:35,229 | INFO     | **************************************
[2025-04-19 01:01:53] 2025-04-19 05:01:35,732 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-19 01:01:53] 2025-04-19 05:01:35,754 | INFO     | sufficient remaining disk space (18577620992 B)
[2025-04-19 01:01:53] 2025-04-19 05:01:35,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 01:01:53] 2025-04-19 05:01:35,755 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 01:01:53] 2025-04-19 05:01:35,755 | INFO     | update_server=False
[2025-04-19 01:01:53] 2025-04-19 05:01:35,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 01:01:53] 2025-04-19 05:01:35,756 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 01:01:53] 2025-04-19 05:01:35,756 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 01:01:53] 2025-04-19 05:01:35,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 01:01:53] 2025-04-19 05:01:35,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 01:01:53] 2025-04-19 05:01:35,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 01:01:53] 2025-04-19 05:01:35,857 | INFO     | all data control threads have been joined
[2025-04-19 01:01:53] 2025-04-19 05:01:36,027 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 01:01:53] 2025-04-19 05:01:36,027 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 01:01:53] 2025-04-19 05:01:36,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 01:01:53] 2025-04-19 05:01:36,027 | INFO     | will abort loop
[2025-04-19 01:01:53] 2025-04-19 05:01:36,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 01:01:53] 2025-04-19 05:01:36,549 | INFO     | all job control threads have been joined
[2025-04-19 01:01:53] 2025-04-19 05:01:36,761 | INFO     | [job] queue monitor thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:36,762 | INFO     | [job] retrieve thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:36,840 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:36,859 | INFO     | [data] control thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,033 | INFO     | [job] job monitor thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,052 | INFO     | all payload control threads have been joined
[2025-04-19 01:01:53] 2025-04-19 05:01:37,080 | INFO     | [payload] failed_post thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,309 | INFO     | [job] validate thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,551 | INFO     | [job] control thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,739 | INFO     | [payload] validate_post thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:37,837 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:38,057 | INFO     | [payload] control thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:38,156 | INFO     | [data] copytool_out thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:38,187 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:38,193 | INFO     | [data] copytool_in thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:38,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 01:01:53] 2025-04-19 05:01:42,745 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:45,937 | INFO     | job.realtimelogging is not enabled
[2025-04-19 01:01:53] 2025-04-19 05:01:46,942 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 01:01:53] 2025-04-19 05:01:48,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135895852864)>', '<ExcThread(monitor, started 140135245014784)>']
[2025-04-19 01:01:53] 2025-04-19 05:01:48,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 01:01:53] 2025-04-19 05:01:48,800 | INFO     | [monitor] control thread has ended
[2025-04-19 01:01:53] 2025-04-19 05:01:53,514 | INFO     | all workflow threads have been joined
[2025-04-19 01:01:53] 2025-04-19 05:01:53,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 01:01:53] 2025-04-19 05:01:53,515 | INFO     | traces error code: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:53,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 01:01:53] 2025-04-19 05:01:53,632 [wrapper] ==== pilot stdout END ====
[2025-04-19 01:01:53] 2025-04-19 05:01:53,636 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 01:01:53] 2025-04-19 05:01:53,641 [wrapper] pilotpid: 4520
[2025-04-19 01:01:53] 2025-04-19 05:01:53,645 [wrapper] Pilot exit status: 0
[2025-04-19 01:01:53] 2025-04-19 05:01:53,663 [wrapper] pandaids: 6606935148 6606935148
[2025-04-19 01:01:53] 2025-04-19 05:01:53,707 [wrapper] cleanup supervisor_pilot 17218 4521
[2025-04-19 01:01:53] 2025-04-19 05:01:53,712 [wrapper] Test setup, not cleaning
[2025-04-19 01:01:53] 2025-04-19 05:01:53,717 [wrapper] apfmon messages muted
[2025-04-19 01:01:53] 2025-04-19 05:01:53,721 [wrapper] ==== wrapper stdout END ====
[2025-04-19 01:01:53] 2025-04-19 05:01:53,726 [wrapper] ==== wrapper stderr END ====
[2025-04-19 01:01:53]  *** Error codes and diagnostics ***
[2025-04-19 01:01:53]     "exeErrorCode": 0,
[2025-04-19 01:01:53]     "exeErrorDiag": "",
[2025-04-19 01:01:53]     "pilotErrorCode": 0,
[2025-04-19 01:01:53]     "pilotErrorDiag": "",
[2025-04-19 01:01:53]  *** Listing of results directory ***
[2025-04-19 01:01:53] total 642968
[2025-04-19 01:01:53] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 17:39 pilot3.tar.gz
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 17:55 queuedata.json
[2025-04-19 01:01:53] -rwx------ 1 boincer umatlas     37140 Apr 18 17:55 runpilot2-wrapper.sh
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas       100 Apr 18 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 01:01:53] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 20:54 run_atlas
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas       105 Apr 18 20:54 job.xml
[2025-04-19 01:01:53] -rw-r--r-- 3 boincer umatlas 227432021 Apr 18 20:54 EVNT.44075481._002881.pool.root.1
[2025-04-19 01:01:53] -rw-r--r-- 3 boincer umatlas 227432021 Apr 18 20:54 ATLAS.root_0
[2025-04-19 01:01:53] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 20:54 start_atlas.sh
[2025-04-19 01:01:53] drwxrwx--x 2 boincer umatlas      4096 Apr 18 20:54 shared
[2025-04-19 01:01:53] -rw-r--r-- 2 boincer umatlas    508888 Apr 18 20:54 input.tar.gz
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas         0 Apr 18 20:54 boinc_lockfile
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 22:49 pandaJob.out
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas       462 Apr 18 22:50 setup.sh.local
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas    991292 Apr 18 22:50 agis_schedconf.cvmfs.json
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas      5907 Apr 19 00:55 init_data.xml
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas 197534080 Apr 19 01:00 HITS.44075483._074211.pool.root.1
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas       531 Apr 19 01:00 boinc_task_state.xml
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas        96 Apr 19 01:01 pilot_heartbeat.json
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas      1049 Apr 19 01:01 memory_monitor_summary.json
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas   1618536 Apr 19 01:01 agis_ddmendpoints.agis.ALL.json
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas    346846 Apr 19 01:01 log.44075483._074211.job.log.tgz.1
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas      7747 Apr 19 01:01 heartbeat.json
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas        29 Apr 19 01:01 wrapper_checkpoint.txt
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 01:01 boinc_mmap_file
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas      4734 Apr 19 01:01 pilotlog.txt
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas    718192 Apr 19 01:01 log.44075483._074211.job.log.1
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas       357 Apr 19 01:01 output.list
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas       620 Apr 19 01:01 runtime_log
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas   1085440 Apr 19 01:01 result.tar.gz
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas       784 Apr 19 01:01 tNIKDmbr8P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm2FgLDmzWhXLm.diag
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas     11473 Apr 19 01:01 runtime_log.err
[2025-04-19 01:01:53] -rw-r--r-- 1 boincer umatlas     23277 Apr 19 01:01 stderr.txt
[2025-04-19 01:01:53] HITS file was successfully produced:
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas 197534080 Apr 19 01:00 shared/HITS.pool.root.1
[2025-04-19 01:01:53]  *** Contents of shared directory: ***
[2025-04-19 01:01:53] total 416596
[2025-04-19 01:01:53] -rw-r--r-- 3 boincer umatlas 227432021 Apr 18 20:54 ATLAS.root_0
[2025-04-19 01:01:53] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 20:54 start_atlas.sh
[2025-04-19 01:01:53] -rw-r--r-- 2 boincer umatlas    508888 Apr 18 20:54 input.tar.gz
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas 197534080 Apr 19 01:00 HITS.pool.root.1
[2025-04-19 01:01:53] -rw------- 1 boincer umatlas   1085440 Apr 19 01:01 result.tar.gz
01:01:55 (32279): run_atlas exited; CPU time 57219.564023
01:01:55 (32279): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN