Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 09:55:09 (8992): Detected: vboxwrapper 26206
2025-04-19 09:55:09 (8992): Detected: BOINC client v7.16.20
2025-04-19 09:55:10 (8992): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-19 09:55:10 (8992): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 09:55:10 (8992): Create VM. (boinc_10d8815ad0da7852, slot#1)
2025-04-19 09:55:11 (8992): Setting Memory Size for VM. (4700MB)
2025-04-19 09:55:11 (8992): Setting CPU Count for VM. (7)
2025-04-19 09:55:11 (8992): Setting Chipset Options for VM.
2025-04-19 09:55:12 (8992): Setting Graphics Controller Options for VM.
2025-04-19 09:55:12 (8992): Setting Boot Options for VM.
2025-04-19 09:55:12 (8992): Setting Network Configuration for NAT.
2025-04-19 09:55:12 (8992): Enabling VM Network Access.
2025-04-19 09:55:13 (8992): Disabling USB Support for VM.
2025-04-19 09:55:13 (8992): Disabling COM Port Support for VM.
2025-04-19 09:55:13 (8992): Disabling LPT Port Support for VM.
2025-04-19 09:55:13 (8992): Disabling Audio Support for VM.
2025-04-19 09:55:14 (8992): Disabling Clipboard Support for VM.
2025-04-19 09:55:14 (8992): Disabling Drag and Drop Support for VM.
2025-04-19 09:55:14 (8992): Adding storage controller(s) to VM.
2025-04-19 09:55:14 (8992): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 09:55:15 (8992): Adding VirtualBox Guest Additions to VM.
2025-04-19 09:55:15 (8992): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 09:55:15 (8992): forwarding host port 56685 to guest port 80
2025-04-19 09:55:16 (8992): Enabling remote desktop for VM.
2025-04-19 09:55:16 (8992): Required extension pack not installed, remote desktop not enabled.
2025-04-19 09:55:16 (8992): Enabling shared directory for VM.
2025-04-19 09:55:17 (8992): Starting VM using VBoxManage interface. (boinc_10d8815ad0da7852, slot#1)
2025-04-19 09:55:21 (8992): Successfully started VM. (PID = '1480')
2025-04-19 09:55:21 (8992): Reporting VM Process ID to BOINC.
2025-04-19 09:55:21 (8992): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-19 09:55:21 (8992): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 09:55:21 (8992): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 09:55:21 (8992): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 09:55:21 (8992): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 09:55:21 (8992): Detected: Web Application Enabled (http://localhost:56685)
2025-04-19 09:55:21 (8992): Preference change detected
2025-04-19 09:55:21 (8992): Setting CPU throttle for VM. (100%)
2025-04-19 09:55:21 (8992): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 09:55:23 (8992): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 09:55:23 (8992): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 09:55:26 (8992): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 09:55:26 (8992): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 09:55:26 (8992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 09:55:33 (8992): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 09:55:33 (8992): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 09:55:38 (8992): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000119 main     Log opened 2025-04-19T09:55:37.286455000Z
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000180 main     OS Product: Linux
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000198 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000213 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000232 main     Process ID: 1347
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 09:55:38 (8992): Guest Log: 00:00:00.001105 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 09:55:38 (8992): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 09:55:38 (8992): Guest Log: [INFO] Mounting shared directory
2025-04-19 09:55:38 (8992): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 09:55:42 (8992): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 09:55:42 (8992): Guest Log: [INFO] Detected branch: prod
2025-04-19 09:55:42 (8992): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 09:55:42 (8992): Guest Log: Copying input files
2025-04-19 09:55:43 (8992): Guest Log: Copied input files into RunAtlas.
2025-04-19 09:55:43 (8992): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 09:55:43 (8992): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 09:55:43 (8992): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 09:55:43 (8992): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 09:55:48 (8992): Guest Log: 00:00:10.003256 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 106 124 000ns (GuestNow=1 745 049 348 182 716 000 ns GuestLast=1 745 056 537 288 840 000 ns fSetTimeLastLoop=true )
2025-04-19 09:55:50 (8992): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 09:55:50 (8992): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 09:55:50 (8992): Guest Log: 2.6.3.0 1624 0 32172 145030 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 09:55:51 (8992): Guest Log: copied the webapp to /var/www
2025-04-19 09:55:51 (8992): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-19 09:55:51 (8992): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-19 09:55:51 (8992): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 09:55:51 (8992): Guest Log:  *** Starting ATLAS job. (PandaID=6600379286 taskID=44075164) ***
2025-04-19 11:14:10 (8992): Guest Log:  *** Job finished ***
2025-04-19 11:14:10 (8992): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:13:57,368 | INFO     | [data] copytool_out thread has finished
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:13:57,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:01,738 | INFO     | [data] queue_monitor thread has finished
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:02,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559370893120)>', '<ExcThread(monitor, started 140558550943488)>']
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:02,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:02,422 | INFO     | [monitor] control thread has ended
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,269 | INFO     | all workflow threads have been joined
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,269 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,270 | INFO     | traces error code: 0
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,340 [wrapper] ==== pilot stdout END ====
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,345 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,349 [wrapper] pilotpid: 5974
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,352 [wrapper] Pilot exit status: 0
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,432 [wrapper] pandaids: 6600379286
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,458 [wrapper] cleanup supervisor_pilot   768 5975
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,463 [wrapper] Test setup, not cleaning
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,468 [wrapper] apfmon messages muted
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,472 [wrapper] ==== wrapper stdout END ====
2025-04-19 11:14:10 (8992): Guest Log: 2025-04-19 09:14:07,478 [wrapper] ==== wrapper stderr END ====
2025-04-19 11:14:10 (8992): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 11:14:10 (8992): Guest Log:     "exeErrorCode": 0,
2025-04-19 11:14:10 (8992): Guest Log:     "exeErrorDiag": "",
2025-04-19 11:14:10 (8992): Guest Log:     "pilotErrorCode": 0,
2025-04-19 11:14:10 (8992): Guest Log:     "pilotErrorDiag": "",
2025-04-19 11:14:10 (8992): Guest Log:  *** Listing of results directory ***
2025-04-19 11:14:10 (8992): Guest Log: total 197884
2025-04-19 11:14:10 (8992): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 11 21:44 pilot3.tar.gz
2025-04-19 11:14:10 (8992): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 11 21:48 runpilot2-wrapper.sh
2025-04-19 11:14:10 (8992): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 11 21:49 queuedata.json
2025-04-19 11:14:10 (8992): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 07:55 start_atlas.sh
2025-04-19 11:14:10 (8992): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Apr 19 07:55 input.tar.gz
2025-04-19 11:14:10 (8992): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Apr 19 07:55 init_data.xml
2025-04-19 11:14:10 (8992): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 07:55 EVNT.44075162._001230.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 11:14:10 (8992): Guest Log: -rw-r--r--. 1 atlas atlas      2551 Apr 19 07:55 pandaJob.out
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 07:55 setup.sh.local
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas    991300 Apr 19 07:56 agis_schedconf.cvmfs.json
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 07:56 agis_ddmendpoints.agis.ALL.json
2025-04-19 11:14:10 (8992): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 07:56 pilot3
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 09:13 pilot_heartbeat.json
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas 197427114 Apr 19 09:13 HITS.44075164._032036.pool.root.1
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 19 09:13 memory_monitor_summary.json
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas    278524 Apr 19 09:13 log.44075164._032036.job.log.tgz.1
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas      7709 Apr 19 09:13 heartbeat.json
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 19 09:14 pilotlog.txt
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas    424733 Apr 19 09:14 log.44075164._032036.job.log.1
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 09:14 output.list
2025-04-19 11:14:10 (8992): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 09:14 runtime_log
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas    727040 Apr 19 09:14 result.tar.gz
2025-04-19 11:14:10 (8992): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 19 09:14 runtime_log.err
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas       651 Apr 19 09:14 oLgMDmIQbN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmWMPLDmFPKDUm.diag
2025-04-19 11:14:10 (8992): Guest Log: Looking for outputfile HITS.44075164._032036.pool.root.1
2025-04-19 11:14:10 (8992): Guest Log: HITS file was successfully produced
2025-04-19 11:14:10 (8992): Guest Log: -rw-------. 1 atlas atlas 197427114 Apr 19 09:13 /home/atlas/RunAtlas/HITS.44075164._032036.pool.root.1
2025-04-19 11:14:11 (8992): Guest Log: Successfully finished the ATLAS job!
2025-04-19 11:14:11 (8992): Guest Log: Copying the results back to the shared directory!
2025-04-19 11:14:11 (8992): Guest Log:  *** Contents of shared directory: ***
2025-04-19 11:14:11 (8992): Guest Log: total 409024
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root 220137616 Apr 19 07:55 ATLAS.root_0
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root 197427114 Apr 19  2025 HITS.pool.root.1
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root      8774 Apr 19 07:55 init_data.xml
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root    508884 Apr 19 00:19 input.tar.gz
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root    727040 Apr 19  2025 result.tar.gz
2025-04-19 11:14:11 (8992): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 00:19 start_atlas.sh
2025-04-19 11:14:11 (8992): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 11:14:11 (8992): VM Completion File Detected.
2025-04-19 11:14:11 (8992): Powering off VM.
2025-04-19 11:14:11 (8992): Successfully stopped VM.
2025-04-19 11:14:11 (8992): Deregistering VM. (boinc_10d8815ad0da7852, slot#1)
2025-04-19 11:14:11 (8992): Removing network bandwidth throttle group from VM.
2025-04-19 11:14:11 (8992): Removing VM from VirtualBox.
11:14:17 (8992): called boinc_finish(0)

</stderr_txt>
]]>

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