Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 20:25:22 (28308): Detected: vboxwrapper 26206
2025-04-18 20:25:22 (28308): Detected: BOINC client v8.0.2
2025-04-18 20:25:22 (28308): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-18 20:25:23 (28308): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 20:25:23 (28308): Create VM. (boinc_564776f04f5ae526, slot#1)
2025-04-18 20:25:24 (28308): Setting Memory Size for VM. (4800MB)
2025-04-18 20:25:24 (28308): Setting CPU Count for VM. (8)
2025-04-18 20:25:24 (28308): Setting Chipset Options for VM.
2025-04-18 20:25:25 (28308): Setting Graphics Controller Options for VM.
2025-04-18 20:25:25 (28308): Setting Boot Options for VM.
2025-04-18 20:25:25 (28308): Setting Network Configuration for NAT.
2025-04-18 20:25:25 (28308): Enabling VM Network Access.
2025-04-18 20:25:26 (28308): Disabling USB Support for VM.
2025-04-18 20:25:26 (28308): Disabling COM Port Support for VM.
2025-04-18 20:25:26 (28308): Disabling LPT Port Support for VM.
2025-04-18 20:25:26 (28308): Disabling Audio Support for VM.
2025-04-18 20:25:27 (28308): Disabling Clipboard Support for VM.
2025-04-18 20:25:27 (28308): Disabling Drag and Drop Support for VM.
2025-04-18 20:25:27 (28308): Adding storage controller(s) to VM.
2025-04-18 20:25:27 (28308): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 20:25:28 (28308): Adding VirtualBox Guest Additions to VM.
2025-04-18 20:25:28 (28308): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 20:25:28 (28308): forwarding host port 53078 to guest port 80
2025-04-18 20:25:29 (28308): Enabling remote desktop for VM.
2025-04-18 20:25:29 (28308): Required extension pack not installed, remote desktop not enabled.
2025-04-18 20:25:29 (28308): Enabling shared directory for VM.
2025-04-18 20:25:29 (28308): Starting VM using VBoxManage interface. (boinc_564776f04f5ae526, slot#1)
2025-04-18 20:25:35 (28308): Successfully started VM. (PID = '26992')
2025-04-18 20:25:35 (28308): Reporting VM Process ID to BOINC.
2025-04-18 20:25:35 (28308): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-18 20:25:35 (28308): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 20:25:35 (28308): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 20:25:35 (28308): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 20:25:35 (28308): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 20:25:35 (28308): Detected: Web Application Enabled (http://localhost:53078)
2025-04-18 20:25:35 (28308): Preference change detected
2025-04-18 20:25:35 (28308): Setting CPU throttle for VM. (100%)
2025-04-18 20:25:35 (28308): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 20:25:37 (28308): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 20:25:37 (28308): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 20:25:40 (28308): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 20:25:40 (28308): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 20:25:40 (28308): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 20:25:46 (28308): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 20:25:46 (28308): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 20:25:55 (28308): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000146 main     Log opened 2025-04-18T20:25:53.488895000Z
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000227 main     OS Product: Linux
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000306 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000324 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000325 main     Process ID: 1378
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.000326 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 20:25:55 (28308): Guest Log: 00:00:00.002041 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 20:25:55 (28308): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 20:25:55 (28308): Guest Log: [INFO] Mounting shared directory
2025-04-18 20:25:55 (28308): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 20:26:03 (28308): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 20:26:03 (28308): Guest Log: [INFO] Detected branch: prod
2025-04-18 20:26:04 (28308): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 20:26:04 (28308): Guest Log: Copying input files
2025-04-18 20:26:05 (28308): Guest Log: 00:00:10.005330 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 013 003 000ns (GuestNow=1 745 022 364 506 513 000 ns GuestLast=1 745 007 953 493 510 000 ns fSetTimeLastLoop=true )
2025-04-18 20:26:05 (28308): Guest Log: Copied input files into RunAtlas.
2025-04-18 20:26:05 (28308): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 20:26:05 (28308): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 20:26:05 (28308): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 20:26:05 (28308): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 20:26:13 (28308): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 20:26:13 (28308): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 20:26:13 (28308): Guest Log: 2.6.3.0 1679 0 30016 145020 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 20:26:15 (28308): Guest Log: copied the webapp to /var/www
2025-04-18 20:26:15 (28308): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-18 20:26:15 (28308): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-18 20:26:15 (28308): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 20:26:15 (28308): Guest Log:  *** Starting ATLAS job. (PandaID=6606782774 taskID=44075483) ***
2025-04-18 20:39:35 (28308): Guest Log:  *** Job finished ***
2025-04-18 20:39:35 (28308): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:23,960 | INFO     | [data] copytool_out thread has finished
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:24,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:28,228 | INFO     | [data] queue_monitor thread has finished
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:28,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285180946240)>', '<ExcThread(monitor, started 140284738385664)>']
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:29,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:29,723 | INFO     | [monitor] control thread has ended
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,797 | INFO     | all workflow threads have been joined
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,797 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,798 | INFO     | traces error code: 0
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,903 [wrapper] ==== pilot stdout END ====
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,914 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,925 [wrapper] pilotpid: 6021
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:33,934 [wrapper] Pilot exit status: 0
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,025 [wrapper] pandaids: 6606782774
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,097 [wrapper] cleanup supervisor_pilot  6027 6022
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,107 [wrapper] Test setup, not cleaning
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,116 [wrapper] apfmon messages muted
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,126 [wrapper] ==== wrapper stdout END ====
2025-04-18 20:39:35 (28308): Guest Log: 2025-04-19 00:39:34,135 [wrapper] ==== wrapper stderr END ====
2025-04-18 20:39:35 (28308): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 20:39:35 (28308): Guest Log:     "exeErrorCode": 65,
2025-04-18 20:39:35 (28308): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"DetectorStore_Impl                                               FATAL in sysInitialize(): standard std::exception is caught\"",
2025-04-18 20:39:35 (28308): Guest Log:     "pilotErrorCode": 1305,
2025-04-18 20:39:35 (28308): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"DetectorStore_Impl                                               FATAL in sysInitia",
2025-04-18 20:39:35 (28308): Guest Log:  *** Listing of results directory ***
2025-04-18 20:39:35 (28308): Guest Log: total 4032
2025-04-18 20:39:35 (28308): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 18 18:26 pilot3.tar.gz
2025-04-18 20:39:35 (28308): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 18 18:29 runpilot2-wrapper.sh
2025-04-18 20:39:35 (28308): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 18 18:29 queuedata.json
2025-04-18 20:39:35 (28308): Guest Log: -rwxr-xr-x. 1 atlas atlas    9325 Apr 19 00:26 init_data.xml
2025-04-18 20:39:35 (28308): Guest Log: -rwxr-xr-x. 1 atlas atlas  508884 Apr 19 00:26 input.tar.gz
2025-04-18 20:39:35 (28308): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 19 00:26 start_atlas.sh
2025-04-18 20:39:35 (28308): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 19 00:26 EVNT.44075481._002823.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 20:39:35 (28308): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 19 00:26 pandaJob.out
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas     424 Apr 19 00:26 setup.sh.local
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas  991292 Apr 19 00:26 agis_schedconf.cvmfs.json
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 19 00:26 agis_ddmendpoints.agis.ALL.json
2025-04-18 20:39:35 (28308): Guest Log: drwx------. 4 atlas atlas    4096 Apr 19 00:27 pilot3
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas    1016 Apr 19 00:37 memory_monitor_summary.json
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas   47557 Apr 19 00:37 log.44075483._072703.job.log.tgz.1
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas      95 Apr 19 00:39 pilot_heartbeat.json
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas   11735 Apr 19 00:39 heartbeat.json
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas    4599 Apr 19 00:39 pilotlog.txt
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas  118291 Apr 19 00:39 log.44075483._072703.job.log.1
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas     188 Apr 19 00:39 output.list
2025-04-18 20:39:35 (28308): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 19 00:39 runtime_log
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas  184320 Apr 19 00:39 result.tar.gz
2025-04-18 20:39:35 (28308): Guest Log: -rw-------. 1 atlas atlas     645 Apr 19 00:39 TfZMDmAe5P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm3tfLDmVnElwm.diag
2025-04-18 20:39:35 (28308): Guest Log: -rw-r--r--. 1 atlas atlas   10787 Apr 19 00:39 runtime_log.err
2025-04-18 20:39:35 (28308): Guest Log: Looking for outputfile HITS.44075483._072703.pool.root.1
2025-04-18 20:39:35 (28308): Guest Log: No HITS file was produced
2025-04-18 20:39:35 (28308): Guest Log: Successfully finished the ATLAS job!
2025-04-18 20:39:35 (28308): Guest Log: Copying the results back to the shared directory!
2025-04-18 20:39:35 (28308): Guest Log:  *** Contents of shared directory: ***
2025-04-18 20:39:36 (28308): Guest Log: total 217684
2025-04-18 20:39:36 (28308): Guest Log: -rwxrwxrwx. 1 root root 222178917 Apr 19 00:25 ATLAS.root_0
2025-04-18 20:39:36 (28308): Guest Log: -rwxrwxrwx. 1 root root      9325 Apr 19 00:25 init_data.xml
2025-04-18 20:39:36 (28308): Guest Log: -rwxrwxrwx. 1 root root    508884 Apr 19 00:25 input.tar.gz
2025-04-18 20:39:36 (28308): Guest Log: -rwxrwxrwx. 1 root root    184320 Apr 19 00:39 result.tar.gz
2025-04-18 20:39:36 (28308): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 19 00:25 start_atlas.sh
2025-04-18 20:39:36 (28308): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 20:39:36 (28308): VM Completion File Detected.
2025-04-18 20:39:36 (28308): Powering off VM.
2025-04-18 20:39:37 (28308): Successfully stopped VM.
2025-04-18 20:39:37 (28308): Deregistering VM. (boinc_564776f04f5ae526, slot#1)
2025-04-18 20:39:37 (28308): Removing network bandwidth throttle group from VM.
2025-04-18 20:39:37 (28308): Removing VM from VirtualBox.
20:39:42 (28308): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN