Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:37:27 (32129): wrapper (7.7.26015): starting
19:37:27 (32129): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 19:37:27] Arguments: --nthreads 12
[2025-04-18 19:37:27] Threads: 12
[2025-04-18 19:37:27] Checking for CVMFS
[2025-04-18 19:37:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 19:37:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 19:37:27] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 19:37:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 19:37:28] 2.11.2.0 5876 87116 149820 145019 0 55 19049340 20275200 1 130560 0 23127683 99.970 7399079 52243 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 19:37:28] CVMFS is ok
[2025-04-18 19:37:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 19:37:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 19:37:28] Further information can be found at the LHC@home message board.
[2025-04-18 19:37:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 19:37:28] Checking for apptainer binary...
[2025-04-18 19:37:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 19:37:28] Running /usr/bin/apptainer --version
[2025-04-18 19:37:28] apptainer version 1.3.2-1.el7
[2025-04-18 19:37:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 19:37:29] c-205-31.aglt2.org
[2025-04-18 19:37:29] apptainer works
[2025-04-18 19:37:29] Set ATHENA_PROC_NUMBER=12
[2025-04-18 19:37:29] Set ATHENA_CORE_NUMBER=12
[2025-04-18 19:37:29] Starting ATLAS job with PandaID=6606874667
[2025-04-18 19:37:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 20:58:54]  *** The last 200 lines of the pilot log: ***
[2025-04-18 20:58:54]  workdir=None
[2025-04-18 20:58:54] ]
[2025-04-18 20:58:54] 2025-04-19 00:58:27,028 | INFO     | transferring file log.44075483._073933.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/log.44075483._073933.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 20:58:54] 2025-04-19 00:58:27,028 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/log.44075483._073933.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._073933.job
[2025-04-18 20:58:54] 2025-04-19 00:58:27,052 | INFO     | adding to output.list: log.44075483._073933.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/f5/log.44075483._073933.job.log.tg
[2025-04-18 20:58:54] 2025-04-19 00:58:27,053 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 20:58:54] 2025-04-19 00:58:27,053 | INFO     | summary of transferred files:
[2025-04-18 20:58:54] 2025-04-19 00:58:27,054 | INFO     |  -- lfn=log.44075483._073933.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 20:58:54] 2025-04-19 00:58:27,054 | INFO     | stage-out finished correctly
[2025-04-18 20:58:54] 2025-04-19 00:58:27,664 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 20:58:54] 2025-04-19 00:58:29,363 | WARNING  | process 9857 can no longer be monitored (due to stat problems) - aborting
[2025-04-18 20:58:54] 2025-04-19 00:58:29,363 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,364 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,365 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4317445 B
[2025-04-18 20:58:54] 2025-04-19 00:58:29,365 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15307 B
[2025-04-18 20:58:54] 2025-04-19 00:58:29,365 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 20:58:54] 2025-04-19 00:58:29,384 | INFO     | sufficient remaining disk space (29396828160 B)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,385 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,386 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6606874667: 4617284 B (within 2537553920 B limit)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,386 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6606874667/HITS.44075483._073933.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,387 | INFO     | total size of present files: 0 B (workdir size: 4617284 B)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,387 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/HITS.44075483._073933.pool.root.1 since it does not exist
[2025-04-18 20:58:54] 2025-04-19 00:58:29,478 | INFO     | number of running child processes to parent process 9857: 1
[2025-04-18 20:58:54] 2025-04-19 00:58:29,478 | INFO     | maximum number of monitored processes: 6
[2025-04-18 20:58:54] 2025-04-19 00:58:29,560 | INFO     | job 6606874667 has state=finished
[2025-04-18 20:58:54] 2025-04-19 00:58:29,560 | INFO     | preparing for final server update for job 6606874667 in state='finished'
[2025-04-18 20:58:54] 2025-04-19 00:58:29,561 | INFO     | this job has now completed (state=finished)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,561 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,561 | INFO     | log transfer has been attempted: DONE
[2025-04-18 20:58:54] 2025-04-19 00:58:29,561 | INFO     | job 6606874667 has finished - writing final server update
[2025-04-18 20:58:54] 2025-04-19 00:58:29,562 | INFO     | total number of processed events: 400 (read)
[2025-04-18 20:58:54] 2025-04-19 00:58:29,563 | INFO     | executing command: lscpu
[2025-04-18 20:58:54] 2025-04-19 00:58:29,591 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 20:58:54] 2025-04-19 00:58:31,981 | INFO     | monitor loop #362: job 0:6606874667 is in state 'finished'
[2025-04-18 20:58:54] 2025-04-19 00:58:31,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,482 | INFO     | monitor loop #363: job 0:6606874667 is in state 'finished'
[2025-04-18 20:58:54] 2025-04-19 00:58:34,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,625 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 20:58:54] 2025-04-19 00:58:34,626 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606874667/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,627 | INFO     | extracted standard info from prmon json
[2025-04-18 20:58:54] 2025-04-19 00:58:34,627 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 20:58:54] 2025-04-19 00:58:34,627 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 20:58:54] 2025-04-19 00:58:34,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 20:58:54] 2025-04-19 00:58:34,628 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 20:58:54] 2025-04-19 00:58:34,630 | INFO     | fitting pss+swap vs Time
[2025-04-18 20:58:54] 2025-04-19 00:58:34,630 | INFO     | sum of square deviations: 115715658.0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,630 | INFO     | sum of deviations: 17381488748.5
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | mean x: 1745021962.5
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | mean y: 2591958.097222222
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | -- intersect: -262114740573.33197
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | intersect: -262114740573.33197
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | chi2: 2.2836304465751227
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | -- intersect: -262114740573.33197
[2025-04-18 20:58:54] 2025-04-19 00:58:34,631 | INFO     | current memory leak: 150.21 B/s (using 72 data points, chi2=2.28)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | ..............................
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . Timing measurements:
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . get job = 0 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . initial setup = 2 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . payload setup = 7 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . stage-in = 0 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . payload execution = 4816 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,632 | INFO     | . stage-out = 0 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,633 | INFO     | . log creation = 0 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,633 | INFO     | ..............................
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | 
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | job summary report
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | --------------------------------------------------
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | PanDA job id: 6606874667
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | task id: 44075483
[2025-04-18 20:58:54] 2025-04-19 00:58:34,717 | INFO     | errors: (none)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | pilot state: finished 
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | transexitcode: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | exeerrorcode: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | exeerrordiag: 
[2025-04-18 20:58:54] 2025-04-19 00:58:34,718 | INFO     | exitcode: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | exitmsg: OK
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | cpuconsumptiontime: 45376 s
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | nevents: 400
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | neventsw: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | pid: 9857
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | pgrp: 9857
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | corecount: 12
[2025-04-18 20:58:54] 2025-04-19 00:58:34,719 | INFO     | event service: False
[2025-04-18 20:58:54] 2025-04-19 00:58:34,720 | INFO     | sizes: {0: 2426653, 1: 2426852, 6: 2427058, 11: 2427086, 4827: 2453150, 4828: 2462091, 4829: 2462275, 4836: 2462473}
[2025-04-18 20:58:54] 2025-04-19 00:58:34,720 | INFO     | --------------------------------------------------
[2025-04-18 20:58:54] 2025-04-19 00:58:34,720 | INFO     | 
[2025-04-18 20:58:54] 2025-04-19 00:58:34,720 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 20:58:54] 2025-04-19 00:58:34,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,745 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,745 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 20:58:54] 2025-04-19 00:58:34,749 | INFO     | job 6606874667 has completed (purged errors)
[2025-04-18 20:58:54] 2025-04-19 00:58:34,749 | INFO     | overall cleanup function is called
[2025-04-18 20:58:54] 2025-04-19 00:58:35,756 | INFO     | --- collectZombieJob: --- 10, [9857]
[2025-04-18 20:58:54] 2025-04-19 00:58:35,756 | INFO     | zombie collector waiting for pid 9857
[2025-04-18 20:58:54] 2025-04-19 00:58:35,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 20:58:54] 2025-04-19 00:58:35,756 | INFO     | collected zombie processes
[2025-04-18 20:58:54] 2025-04-19 00:58:35,756 | INFO     | will attempt to kill all subprocesses of pid=9857
[2025-04-18 20:58:54] 2025-04-19 00:58:35,850 | INFO     | process IDs to be killed: [9857] (in reverse order)
[2025-04-18 20:58:54] 2025-04-19 00:58:35,904 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 20:58:54] 2025-04-19 00:58:35,904 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 20:58:54] 2025-04-19 00:58:35,908 | INFO     | did not find any defunct processes belonging to 9857
[2025-04-18 20:58:54] 2025-04-19 00:58:35,911 | INFO     | did not find any defunct processes belonging to 9857
[2025-04-18 20:58:54] 2025-04-19 00:58:35,911 | INFO     | ready for new job
[2025-04-18 20:58:54] 2025-04-19 00:58:35,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 20:58:54] 2025-04-19 00:58:35,912 | INFO     | **************************************
[2025-04-18 20:58:54] 2025-04-19 00:58:35,913 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 20:58:54] 2025-04-19 00:58:35,913 | INFO     | **************************************
[2025-04-18 20:58:54] 2025-04-19 00:58:35,913 | INFO     | 
[2025-04-18 20:58:54] 2025-04-19 00:58:35,914 | INFO     | architecture information:
[2025-04-18 20:58:54] 2025-04-19 00:58:35,914 | INFO     | executing command: cat /etc/os-release
[2025-04-18 20:58:54] 2025-04-19 00:58:35,929 | INFO     | cat /etc/os-release:
[2025-04-18 20:58:54] NAME="CentOS Linux"
[2025-04-18 20:58:54] VERSION="7 (Core)"
[2025-04-18 20:58:54] ID="centos"
[2025-04-18 20:58:54] ID_LIKE="rhel fedora"
[2025-04-18 20:58:54] VERSION_ID="7"
[2025-04-18 20:58:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 20:58:54] ANSI_COLOR="0;31"
[2025-04-18 20:58:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 20:58:54] HOME_URL="https://www.centos.org/"
[2025-04-18 20:58:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 20:58:54] 
[2025-04-18 20:58:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 20:58:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 20:58:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 20:58:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 20:58:54] 
[2025-04-18 20:58:54] 2025-04-19 00:58:35,929 | INFO     | **************************************
[2025-04-18 20:58:54] 2025-04-19 00:58:36,431 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 20:58:54] 2025-04-19 00:58:36,500 | INFO     | sufficient remaining disk space (29402071040 B)
[2025-04-18 20:58:54] 2025-04-19 00:58:36,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 20:58:54] 2025-04-19 00:58:36,500 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 20:58:54] 2025-04-19 00:58:36,500 | INFO     | update_server=False
[2025-04-18 20:58:54] 2025-04-19 00:58:36,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 20:58:54] 2025-04-19 00:58:36,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 20:58:54] 2025-04-19 00:58:36,501 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 20:58:54] 2025-04-19 00:58:36,502 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 20:58:54] 2025-04-19 00:58:36,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 20:58:54] 2025-04-19 00:58:36,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 20:58:54] 2025-04-19 00:58:36,984 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 20:58:54] 2025-04-19 00:58:36,984 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 20:58:54] 2025-04-19 00:58:36,984 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 20:58:54] 2025-04-19 00:58:36,984 | INFO     | will abort loop
[2025-04-18 20:58:54] 2025-04-19 00:58:37,312 | INFO     | all payload control threads have been joined
[2025-04-18 20:58:54] 2025-04-19 00:58:37,418 | INFO     | all data control threads have been joined
[2025-04-18 20:58:54] 2025-04-19 00:58:37,506 | INFO     | [job] retrieve thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,507 | INFO     | [job] queue monitor thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,576 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,602 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,620 | INFO     | all job control threads have been joined
[2025-04-18 20:58:54] 2025-04-19 00:58:37,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 20:58:54] 2025-04-19 00:58:37,847 | INFO     | [data] copytool_in thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,915 | INFO     | [payload] failed_post thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:37,989 | INFO     | [job] job monitor thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 20:58:54] 2025-04-19 00:58:38,317 | INFO     | [payload] control thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,424 | INFO     | [data] control thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,500 | INFO     | [payload] validate_post thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,614 | INFO     | [job] validate thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,626 | INFO     | [job] control thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:38,766 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:39,664 | INFO     | [data] copytool_out thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:42,261 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:46,983 | INFO     | job.realtimelogging is not enabled
[2025-04-18 20:58:54] 2025-04-19 00:58:47,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 20:58:54] 2025-04-19 00:58:49,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347887773504)>', '<ExcThread(monitor, started 140347158021888)>']
[2025-04-18 20:58:54] 2025-04-19 00:58:49,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 20:58:54] 2025-04-19 00:58:49,567 | INFO     | [monitor] control thread has ended
[2025-04-18 20:58:54] 2025-04-19 00:58:54,102 | INFO     | all workflow threads have been joined
[2025-04-18 20:58:54] 2025-04-19 00:58:54,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 20:58:54] 2025-04-19 00:58:54,103 | INFO     | traces error code: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:54,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 20:58:54] 2025-04-19 00:58:54,188 [wrapper] ==== pilot stdout END ====
[2025-04-18 20:58:54] 2025-04-19 00:58:54,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 20:58:54] 2025-04-19 00:58:54,196 [wrapper] pilotpid: 3447
[2025-04-18 20:58:54] 2025-04-19 00:58:54,200 [wrapper] Pilot exit status: 0
[2025-04-18 20:58:54] 2025-04-19 00:58:54,216 [wrapper] pandaids: 6606874667
[2025-04-18 20:58:54] 2025-04-19 00:58:54,253 [wrapper] cleanup supervisor_pilot 14626 3448
[2025-04-18 20:58:54] 2025-04-19 00:58:54,257 [wrapper] Test setup, not cleaning
[2025-04-18 20:58:54] 2025-04-19 00:58:54,261 [wrapper] apfmon messages muted
[2025-04-18 20:58:54] 2025-04-19 00:58:54,265 [wrapper] ==== wrapper stdout END ====
[2025-04-18 20:58:54] 2025-04-19 00:58:54,268 [wrapper] ==== wrapper stderr END ====
[2025-04-18 20:58:54]  *** Error codes and diagnostics ***
[2025-04-18 20:58:54]     "exeErrorCode": 0,
[2025-04-18 20:58:54]     "exeErrorDiag": "",
[2025-04-18 20:58:54]     "pilotErrorCode": 0,
[2025-04-18 20:58:54]     "pilotErrorDiag": "",
[2025-04-18 20:58:54]  *** Listing of results directory ***
[2025-04-18 20:58:54] total 412332
[2025-04-18 20:58:54] -rwx------ 1 boincer umatlas     37140 Apr 18 16:50 runpilot2-wrapper.sh
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 16:50 queuedata.json
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 16:50 pilot3.tar.gz
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas       100 Apr 18 19:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 20:58:54] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 19:37 run_atlas
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas       105 Apr 18 19:37 job.xml
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas 222326045 Apr 18 19:37 EVNT.44075481._002871.pool.root.1
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 19:37 start_atlas.sh
[2025-04-18 20:58:54] drwxrwx--x 2 boincer umatlas      4096 Apr 18 19:37 shared
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas    508885 Apr 18 19:37 input.tar.gz
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas         0 Apr 18 19:37 boinc_lockfile
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 19:37 pandaJob.out
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas       424 Apr 18 19:37 setup.sh.local
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas    991300 Apr 18 19:37 agis_schedconf.cvmfs.json
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas   1618536 Apr 18 19:37 agis_ddmendpoints.agis.ALL.json
[2025-04-18 20:58:54] drwx------ 4 boincer umatlas      4096 Apr 18 19:37 pilot3
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas      5868 Apr 18 20:54 init_data.xml
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas        95 Apr 18 20:57 pilot_heartbeat.json
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas 194378260 Apr 18 20:57 HITS.44075483._073933.pool.root.1
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas       529 Apr 18 20:58 boinc_task_state.xml
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas      1048 Apr 18 20:58 memory_monitor_summary.json
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas    365518 Apr 18 20:58 log.44075483._073933.job.log.tgz.1
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas      7765 Apr 18 20:58 heartbeat.json
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 20:58 boinc_mmap_file
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas        27 Apr 18 20:58 wrapper_checkpoint.txt
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas      4734 Apr 18 20:58 pilotlog.txt
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas    461835 Apr 18 20:58 log.44075483._073933.job.log.1
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas       357 Apr 18 20:58 output.list
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas       620 Apr 18 20:58 runtime_log
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas    849920 Apr 18 20:58 result.tar.gz
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 20:58 runtime_log.err
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas       658 Apr 18 20:58 EjVMDmCq7P7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmzb5KDmb9xDVn.diag
[2025-04-18 20:58:54] -rw-r--r-- 1 boincer umatlas     22445 Apr 18 20:58 stderr.txt
[2025-04-18 20:58:54] HITS file was successfully produced:
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas 194378260 Apr 18 20:57 shared/HITS.pool.root.1
[2025-04-18 20:58:54]  *** Contents of shared directory: ***
[2025-04-18 20:58:54] total 408296
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas 222326045 Apr 18 19:37 ATLAS.root_0
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 19:37 start_atlas.sh
[2025-04-18 20:58:54] -rw-r--r-- 2 boincer umatlas    508885 Apr 18 19:37 input.tar.gz
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas 194378260 Apr 18 20:57 HITS.pool.root.1
[2025-04-18 20:58:54] -rw------- 1 boincer umatlas    849920 Apr 18 20:58 result.tar.gz
20:58:55 (32129): run_atlas exited; CPU time 45361.924723
20:58:55 (32129): called boinc_finish(0)

</stderr_txt>
]]>

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