Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:55:55 (2080000): wrapper (7.7.26015): starting
21:55:55 (2080000): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 21:55:55] Arguments: --nthreads 12
[2025-04-18 21:55:55] Threads: 12
[2025-04-18 21:55:55] Checking for CVMFS
[2025-04-18 21:55:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 21:55:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 21:55:55] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 21:55:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 21:55:55] 2.10.0.0 2005716 34 45548 145023 1 187 2185942 4096001 0 130560 0 59934 99.997 1175 1596 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://172.16.0.26:3128 1
[2025-04-18 21:55:55] CVMFS is ok
[2025-04-18 21:55:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 21:55:55] Checking for apptainer binary...
[2025-04-18 21:55:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 21:55:55] Running /usr/bin/apptainer --version
[2025-04-18 21:55:55] apptainer version 1.3.6-6.1
[2025-04-18 21:55:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 21:55:55] sofia
[2025-04-18 21:55:55] apptainer works
[2025-04-18 21:55:55] Set ATHENA_PROC_NUMBER=12
[2025-04-18 21:55:55] Set ATHENA_CORE_NUMBER=12
[2025-04-18 21:55:55] Starting ATLAS job with PandaID=6606461236
[2025-04-18 21:55:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 22:28:24]  *** The last 200 lines of the pilot log: ***
[2025-04-18 22:28:24]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-18 22:28:24]  is_altstaged=None
[2025-04-18 22:28:24]  is_tar=False
[2025-04-18 22:28:24]  lfn=log.44075483._069385.job.log.tgz.1
[2025-04-18 22:28:24]  mtime=0
[2025-04-18 22:28:24]  protocol_id=None
[2025-04-18 22:28:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 22:28:24]  replicas=None
[2025-04-18 22:28:24]  scope=mc23_13p6TeV
[2025-04-18 22:28:24]  status=None
[2025-04-18 22:28:24]  status_code=0
[2025-04-18 22:28:24]  storage_token=
[2025-04-18 22:28:24]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6606461236/log.44075483._069385.job.log.tgz.1
[2025-04-18 22:28:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/3c/log.44075483._069385.job.log.tgz.1
[2025-04-18 22:28:24]  workdir=None
[2025-04-18 22:28:24] ]
[2025-04-18 22:28:24] 2025-04-19 03:28:00,001 | INFO     | transferring file log.44075483._069385.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6606461236/log.44075483._069385.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-04-18 22:28:24] 2025-04-19 03:28:00,001 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6606461236/log.44075483._069385.job.log.tgz.1 /var/lib/boinc/slots/1/log.44075483._069385.job
[2025-04-18 22:28:24] 2025-04-19 03:28:00,010 | INFO     | adding to output.list: log.44075483._069385.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/3c/log.44075483._069385.job.log.tg
[2025-04-18 22:28:24] 2025-04-19 03:28:00,010 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 22:28:24] 2025-04-19 03:28:00,010 | INFO     | summary of transferred files:
[2025-04-18 22:28:24] 2025-04-19 03:28:00,010 | INFO     |  -- lfn=log.44075483._069385.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 22:28:24] 2025-04-19 03:28:00,010 | INFO     | stage-out finished correctly
[2025-04-18 22:28:24] 2025-04-19 03:28:01,974 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 22:28:24] 2025-04-19 03:28:02,363 | INFO     | job 6606461236 has state=finished
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | preparing for final server update for job 6606461236 in state='finished'
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | this job has now completed (state=finished)
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | log transfer has been attempted: DONE
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | job 6606461236 has finished - writing final server update
[2025-04-18 22:28:24] 2025-04-19 03:28:02,364 | INFO     | total number of processed events: 400 (read)
[2025-04-18 22:28:24] 2025-04-19 03:28:02,365 | INFO     | executing command: lscpu
[2025-04-18 22:28:24] 2025-04-19 03:28:02,378 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 22:28:24] 2025-04-19 03:28:02,919 | WARNING  | process 2090786 can no longer be monitored (due to stat problems) - aborting
[2025-04-18 22:28:24] 2025-04-19 03:28:02,919 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6606461236/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 22:28:24] 2025-04-19 03:28:02,945 | INFO     | number of running child processes to parent process 2090786: 1
[2025-04-18 22:28:24] 2025-04-19 03:28:02,945 | INFO     | maximum number of monitored processes: 6
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6606461236/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | INFO     | extracted standard info from prmon json
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 22:28:24] 2025-04-19 03:28:03,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | fitting pss+swap vs Time
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | sum of square deviations: 4837300.0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | sum of deviations: 1011329003.9999998
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | mean x: 1745032415.0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | mean y: 2807324.04
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | -- intersect: -364829205205.6076
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | intersect: -364829205205.6076
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | chi2: 0.613694972957589
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | -- intersect: -364829205205.6076
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | current memory leak: 209.07 B/s (using 25 data points, chi2=0.61)
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | ..............................
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . Timing measurements:
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . get job = 0 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . initial setup = 3 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . payload setup = 2 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . stage-in = 0 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . payload execution = 1900 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . stage-out = 0 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | . log creation = 0 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,820 | INFO     | ..............................
[2025-04-18 22:28:24] 2025-04-19 03:28:03,845 | INFO     | 
[2025-04-18 22:28:24] 2025-04-19 03:28:03,845 | INFO     | job summary report
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | --------------------------------------------------
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | PanDA job id: 6606461236
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | task id: 44075483
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | errors: (none)
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | pilot state: finished 
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | transexitcode: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | exeerrorcode: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | exeerrordiag: 
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | exitcode: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | exitmsg: OK
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | cpuconsumptiontime: 16998 s
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | nevents: 400
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | neventsw: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | pid: 2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | pgrp: 2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | corecount: 12
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | event service: False
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | sizes: {0: 2426821, 1: 2427027, 10: 2427055, 1906: 2460881, 1908: 2460881, 1910: 2461051}
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | --------------------------------------------------
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | 
[2025-04-18 22:28:24] 2025-04-19 03:28:03,846 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | job 6606461236 has completed (purged errors)
[2025-04-18 22:28:24] 2025-04-19 03:28:03,855 | INFO     | overall cleanup function is called
[2025-04-18 22:28:24] 2025-04-19 03:28:04,862 | INFO     | --- collectZombieJob: --- 10, [2090786]
[2025-04-18 22:28:24] 2025-04-19 03:28:04,862 | INFO     | zombie collector waiting for pid 2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:04,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 22:28:24] 2025-04-19 03:28:04,862 | INFO     | collected zombie processes
[2025-04-18 22:28:24] 2025-04-19 03:28:04,862 | INFO     | will attempt to kill all subprocesses of pid=2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:04,889 | INFO     | process IDs to be killed: [2090786] (in reverse order)
[2025-04-18 22:28:24] 2025-04-19 03:28:04,906 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 22:28:24] 2025-04-19 03:28:04,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 22:28:24] 2025-04-19 03:28:04,908 | INFO     | did not find any defunct processes belonging to 2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:04,909 | INFO     | did not find any defunct processes belonging to 2090786
[2025-04-18 22:28:24] 2025-04-19 03:28:04,909 | INFO     | ready for new job
[2025-04-18 22:28:24] 2025-04-19 03:28:04,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 22:28:24] 2025-04-19 03:28:04,909 | INFO     | **************************************
[2025-04-18 22:28:24] 2025-04-19 03:28:04,910 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 22:28:24] 2025-04-19 03:28:04,910 | INFO     | **************************************
[2025-04-18 22:28:24] 2025-04-19 03:28:04,910 | INFO     | 
[2025-04-18 22:28:24] 2025-04-19 03:28:04,910 | INFO     | architecture information:
[2025-04-18 22:28:24] 2025-04-19 03:28:04,910 | INFO     | executing command: cat /etc/os-release
[2025-04-18 22:28:24] 2025-04-19 03:28:04,915 | INFO     | cat /etc/os-release:
[2025-04-18 22:28:24] NAME="CentOS Linux"
[2025-04-18 22:28:24] VERSION="7 (Core)"
[2025-04-18 22:28:24] ID="centos"
[2025-04-18 22:28:24] ID_LIKE="rhel fedora"
[2025-04-18 22:28:24] VERSION_ID="7"
[2025-04-18 22:28:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 22:28:24] ANSI_COLOR="0;31"
[2025-04-18 22:28:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 22:28:24] HOME_URL="https://www.centos.org/"
[2025-04-18 22:28:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 22:28:24] 
[2025-04-18 22:28:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 22:28:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 22:28:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 22:28:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 22:28:24] 
[2025-04-18 22:28:24] 2025-04-19 03:28:04,916 | INFO     | **************************************
[2025-04-18 22:28:24] 2025-04-19 03:28:05,418 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-04-18 22:28:24] 2025-04-19 03:28:05,425 | INFO     | sufficient remaining disk space (1840402923520 B)
[2025-04-18 22:28:24] 2025-04-19 03:28:05,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 22:28:24] 2025-04-19 03:28:05,426 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 22:28:24] 2025-04-19 03:28:05,426 | INFO     | update_server=False
[2025-04-18 22:28:24] 2025-04-19 03:28:05,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 22:28:24] 2025-04-19 03:28:05,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 22:28:24] 2025-04-19 03:28:05,448 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 22:28:24] 2025-04-19 03:28:05,448 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 22:28:24] 2025-04-19 03:28:05,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 22:28:24] 2025-04-19 03:28:05,448 | INFO     | will abort loop
[2025-04-18 22:28:24] 2025-04-19 03:28:05,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 22:28:24] 2025-04-19 03:28:05,594 | INFO     | all data control threads have been joined
[2025-04-18 22:28:24] 2025-04-19 03:28:05,947 | INFO     | PID=2083784 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-18 22:28:24] 2025-04-19 03:28:05,947 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 22:28:24] 2025-04-19 03:28:05,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 22:28:24] 2025-04-19 03:28:05,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 22:28:24] 2025-04-19 03:28:06,128 | INFO     | all payload control threads have been joined
[2025-04-18 22:28:24] 2025-04-19 03:28:06,431 | INFO     | [job] retrieve thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:06,431 | INFO     | [job] queue monitor thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:06,448 | INFO     | [job] job monitor thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:06,600 | INFO     | [data] control thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:06,751 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,109 | INFO     | all job control threads have been joined
[2025-04-18 22:28:24] 2025-04-19 03:28:07,134 | INFO     | [payload] control thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,174 | INFO     | [payload] validate_post thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,379 | INFO     | [job] validate thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,418 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,475 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,531 | INFO     | [data] copytool_in thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,545 | INFO     | [data] copytool_out thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:07,591 | INFO     | [payload] failed_post thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:08,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 22:28:24] 2025-04-19 03:28:08,114 | INFO     | [job] control thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:12,008 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:16,437 | INFO     | job.realtimelogging is not enabled
[2025-04-18 22:28:24] 2025-04-19 03:28:17,443 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 22:28:24] 2025-04-19 03:28:18,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584276952896)>', '<ExcThread(monitor, started 140583783876352)>']
[2025-04-18 22:28:24] 2025-04-19 03:28:19,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 22:28:24] 2025-04-19 03:28:19,012 | INFO     | [monitor] control thread has ended
[2025-04-18 22:28:24] 2025-04-19 03:28:24,016 | INFO     | all workflow threads have been joined
[2025-04-18 22:28:24] 2025-04-19 03:28:24,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 22:28:24] 2025-04-19 03:28:24,016 | INFO     | traces error code: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:24,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 22:28:24] 2025-04-19 03:28:24,073 [wrapper] ==== pilot stdout END ====
[2025-04-18 22:28:24] 2025-04-19 03:28:24,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 22:28:24] 2025-04-19 03:28:24,075 [wrapper] pilotpid: 2083784
[2025-04-18 22:28:24] 2025-04-19 03:28:24,075 [wrapper] Pilot exit status: 0
[2025-04-18 22:28:24] 2025-04-19 03:28:24,081 [wrapper] pandaids: 6606461236
[2025-04-18 22:28:24] 2025-04-19 03:28:24,092 [wrapper] cleanup supervisor_pilot 2138247 2083785
[2025-04-18 22:28:24] 2025-04-19 03:28:24,093 [wrapper] Test setup, not cleaning
[2025-04-18 22:28:24] 2025-04-19 03:28:24,094 [wrapper] apfmon messages muted
[2025-04-18 22:28:24] 2025-04-19 03:28:24,095 [wrapper] ==== wrapper stdout END ====
[2025-04-18 22:28:24] 2025-04-19 03:28:24,096 [wrapper] ==== wrapper stderr END ====
[2025-04-18 22:28:24]  *** Error codes and diagnostics ***
[2025-04-18 22:28:24]     "exeErrorCode": 0,
[2025-04-18 22:28:24]     "exeErrorDiag": "",
[2025-04-18 22:28:24]     "pilotErrorCode": 0,
[2025-04-18 22:28:24]     "pilotErrorDiag": "",
[2025-04-18 22:28:24]  *** Listing of results directory ***
[2025-04-18 22:28:24] total 408144
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc    495897 Apr 18 07:26 pilot3.tar.gz
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc      5111 Apr 18 07:50 queuedata.json
[2025-04-18 22:28:24] -rwx------ 1 boinc boinc     37140 Apr 18 07:51 runpilot2-wrapper.sh
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc       100 Apr 18 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 22:28:24] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 21:55 run_atlas
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc       105 Apr 18 21:55 job.xml
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc 221548809 Apr 18 21:55 EVNT.44075481._002696.pool.root.1
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc      9570 Apr 18 21:55 init_data.xml
[2025-04-18 22:28:24] drwxrwx--x 1 boinc boinc        76 Apr 18 21:55 shared
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc    508889 Apr 18 21:55 input.tar.gz
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc     17569 Apr 18 21:55 start_atlas.sh
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc         0 Apr 18 21:55 boinc_lockfile
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc      2577 Apr 18 21:55 pandaJob.out
[2025-04-18 22:28:24] -rw------- 1 boinc boinc       473 Apr 18 21:55 setup.sh.local
[2025-04-18 22:28:24] -rw------- 1 boinc boinc    991292 Apr 18 21:55 agis_schedconf.cvmfs.json
[2025-04-18 22:28:24] -rw------- 1 boinc boinc   1618536 Apr 18 21:56 agis_ddmendpoints.agis.ALL.json
[2025-04-18 22:28:24] drwx------ 1 boinc boinc       368 Apr 18 21:56 pilot3
[2025-04-18 22:28:24] -rw------- 1 boinc boinc        95 Apr 18 22:27 pilot_heartbeat.json
[2025-04-18 22:28:24] -rw------- 1 boinc boinc 191450177 Apr 18 22:27 HITS.44075483._069385.pool.root.1
[2025-04-18 22:28:24] -rw------- 1 boinc boinc      1052 Apr 18 22:27 memory_monitor_summary.json
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc       529 Apr 18 22:27 boinc_task_state.xml
[2025-04-18 22:28:24] -rw------- 1 boinc boinc    323234 Apr 18 22:27 log.44075483._069385.job.log.tgz.1
[2025-04-18 22:28:24] -rw------- 1 boinc boinc      7712 Apr 18 22:28 heartbeat.json
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc      8192 Apr 18 22:28 boinc_mmap_file
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc        27 Apr 18 22:28 wrapper_checkpoint.txt
[2025-04-18 22:28:24] -rw------- 1 boinc boinc      4932 Apr 18 22:28 pilotlog.txt
[2025-04-18 22:28:24] -rw------- 1 boinc boinc    220257 Apr 18 22:28 log.44075483._069385.job.log.1
[2025-04-18 22:28:24] -rw------- 1 boinc boinc       357 Apr 18 22:28 output.list
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc       620 Apr 18 22:28 runtime_log
[2025-04-18 22:28:24] -rw------- 1 boinc boinc    563200 Apr 18 22:28 result.tar.gz
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc     11443 Apr 18 22:28 runtime_log.err
[2025-04-18 22:28:24] -rw------- 1 boinc boinc       648 Apr 18 22:28 QVlKDmLN0P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmLKfLDmks3I6m.diag
[2025-04-18 22:28:24] -rw-r--r-- 1 boinc boinc     21072 Apr 18 22:28 stderr.txt
[2025-04-18 22:28:24] HITS file was successfully produced:
[2025-04-18 22:28:24] -rw------- 1 boinc boinc 191450177 Apr 18 22:27 shared/HITS.pool.root.1
[2025-04-18 22:28:24]  *** Contents of shared directory: ***
[2025-04-18 22:28:24] total 404396
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc 221548809 Apr 18 21:55 ATLAS.root_0
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc    508889 Apr 18 21:55 input.tar.gz
[2025-04-18 22:28:24] -rw-r--r-- 2 boinc boinc     17569 Apr 18 21:55 start_atlas.sh
[2025-04-18 22:28:24] -rw------- 1 boinc boinc 191450177 Apr 18 22:27 HITS.pool.root.1
[2025-04-18 22:28:24] -rw------- 1 boinc boinc    563200 Apr 18 22:28 result.tar.gz
22:28:25 (2080000): run_atlas exited; CPU time 16988.158404
22:28:25 (2080000): called boinc_finish(0)

</stderr_txt>
]]>

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