Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:24:22 (1724298): wrapper (7.7.26015): starting
11:24:22 (1724298): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 11:24:22] Arguments: --nthreads 3
[2025-04-19 11:24:22] Threads: 3
[2025-04-19 11:24:22] Checking for CVMFS
[2025-04-19 11:24:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 11:24:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 11:24:23] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 11:24:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 11:24:23] 2.9.2.0 1421216 1063 74208 145033 2 56 23849934 36864000 0 130560 0 785469 99.991 309604 35206 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 11:24:23] CVMFS is ok
[2025-04-19 11:24:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 11:24:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 11:24:23] Further information can be found at the LHC@home message board.
[2025-04-19 11:24:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 11:24:23] Checking for apptainer binary...
[2025-04-19 11:24:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 11:24:23] Running /usr/bin/apptainer --version
[2025-04-19 11:24:23] apptainer version 1.3.6-6.1
[2025-04-19 11:24:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 11:24:23] thA385
[2025-04-19 11:24:23] apptainer works
[2025-04-19 11:24:23] Set ATHENA_PROC_NUMBER=3
[2025-04-19 11:24:23] Set ATHENA_CORE_NUMBER=3
[2025-04-19 11:24:23] Starting ATLAS job with PandaID=6606785526
[2025-04-19 11:24:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:03:51 (1747072): wrapper (7.7.26015): starting
13:03:51 (1747072): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 13:03:51] Arguments: --nthreads 3
[2025-04-19 13:03:51] Threads: 3
[2025-04-19 13:03:51] This job has been restarted, cleaning up previous attempt
[2025-04-19 13:03:51] Checking for CVMFS
[2025-04-19 13:03:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 13:03:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 13:03:53] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 13:03:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 13:03:53] 2.9.2.0 1747198 0 29700 145035 3 1 23871238 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 13:03:53] CVMFS is ok
[2025-04-19 13:03:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 13:03:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 13:03:53] Further information can be found at the LHC@home message board.
[2025-04-19 13:03:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 13:03:53] Checking for apptainer binary...
[2025-04-19 13:03:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 13:03:53] Running /usr/bin/apptainer --version
[2025-04-19 13:03:53] apptainer version 1.3.6-6.1
[2025-04-19 13:03:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 13:03:53] thA385
[2025-04-19 13:03:53] apptainer works
[2025-04-19 13:03:53] Set ATHENA_PROC_NUMBER=3
[2025-04-19 13:03:53] Set ATHENA_CORE_NUMBER=3
[2025-04-19 13:03:53] Starting ATLAS job with PandaID=6606785526
[2025-04-19 13:03:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 14:32:11]  *** The last 200 lines of the pilot log: ***
[2025-04-19 14:32:11]  guid=8f4678fd-8cc2-4210-9318-ab20c2f248b2
[2025-04-19 14:32:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 14:32:11]  is_altstaged=None
[2025-04-19 14:32:11]  is_tar=False
[2025-04-19 14:32:11]  lfn=log.44075483._073508.job.log.tgz.1
[2025-04-19 14:32:11]  mtime=0
[2025-04-19 14:32:11]  protocol_id=None
[2025-04-19 14:32:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 14:32:11]  replicas=None
[2025-04-19 14:32:11]  scope=mc23_13p6TeV
[2025-04-19 14:32:11]  status=None
[2025-04-19 14:32:11]  status_code=0
[2025-04-19 14:32:11]  storage_token=
[2025-04-19 14:32:11]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6606785526/log.44075483._073508.job.log.tgz.1
[2025-04-19 14:32:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/41/log.44075483._073508.job.log.tgz.1
[2025-04-19 14:32:11]  workdir=None
[2025-04-19 14:32:11] ]
[2025-04-19 14:32:11] 2025-04-19 12:31:49,599 | INFO     | transferring file log.44075483._073508.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6606785526/log.44075483._073508.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 14:32:11] 2025-04-19 12:31:49,599 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6606785526/log.44075483._073508.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0735
[2025-04-19 14:32:11] 2025-04-19 12:31:49,613 | INFO     | adding to output.list: log.44075483._073508.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/41/log.44075483._073508.job.log.tg
[2025-04-19 14:32:11] 2025-04-19 12:31:49,614 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 14:32:11] 2025-04-19 12:31:49,614 | INFO     | summary of transferred files:
[2025-04-19 14:32:11] 2025-04-19 12:31:49,614 | INFO     |  -- lfn=log.44075483._073508.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 14:32:11] 2025-04-19 12:31:49,614 | INFO     | stage-out finished correctly
[2025-04-19 14:32:11] 2025-04-19 12:31:50,114 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 14:32:11] 2025-04-19 12:31:50,778 | WARNING  | process 1757635 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 14:32:11] 2025-04-19 12:31:50,778 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606785526/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 14:32:11] 2025-04-19 12:31:50,814 | INFO     | number of running child processes to parent process 1757635: 1
[2025-04-19 14:32:11] 2025-04-19 12:31:50,814 | INFO     | maximum number of monitored processes: 6
[2025-04-19 14:32:11] 2025-04-19 12:31:52,173 | INFO     | job 6606785526 has state=finished
[2025-04-19 14:32:11] 2025-04-19 12:31:52,174 | INFO     | preparing for final server update for job 6606785526 in state='finished'
[2025-04-19 14:32:11] 2025-04-19 12:31:52,174 | INFO     | this job has now completed (state=finished)
[2025-04-19 14:32:11] 2025-04-19 12:31:52,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 14:32:11] 2025-04-19 12:31:52,174 | INFO     | log transfer has been attempted: DONE
[2025-04-19 14:32:11] 2025-04-19 12:31:52,174 | INFO     | job 6606785526 has finished - writing final server update
[2025-04-19 14:32:11] 2025-04-19 12:31:52,175 | INFO     | total number of processed events: 400 (read)
[2025-04-19 14:32:11] 2025-04-19 12:31:52,176 | INFO     | executing command: lscpu
[2025-04-19 14:32:11] 2025-04-19 12:31:52,193 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 14:32:11] 2025-04-19 12:31:53,317 | INFO     | monitor loop #406: job 0:6606785526 is in state 'finished'
[2025-04-19 14:32:11] 2025-04-19 12:31:53,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,798 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 14:32:11] 2025-04-19 12:31:55,798 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606785526/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,798 | INFO     | extracted standard info from prmon json
[2025-04-19 14:32:11] 2025-04-19 12:31:55,798 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 14:32:11] 2025-04-19 12:31:55,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 14:32:11] 2025-04-19 12:31:55,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 14:32:11] 2025-04-19 12:31:55,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 14:32:11] 2025-04-19 12:31:55,799 | INFO     | fitting pss+swap vs Time
[2025-04-19 14:32:11] 2025-04-19 12:31:55,799 | INFO     | sum of square deviations: 152858680.0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | sum of deviations: 13208428637.000002
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | mean x: 1745063343.0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | mean y: 2286238.2911392404
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | -- intersect: -150787610894.53873
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | intersect: -150787610894.53873
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | chi2: 1.0936863698505113
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | -- intersect: -150787610894.53873
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | current memory leak: 86.41 B/s (using 79 data points, chi2=1.09)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | ..............................
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . Timing measurements:
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . get job = 0 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . initial setup = 0 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . payload setup = 3 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . stage-in = 0 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . payload execution = 5248 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . stage-out = 0 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | . log creation = 0 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,800 | INFO     | ..............................
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | 
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | job summary report
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | --------------------------------------------------
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | PanDA job id: 6606785526
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | task id: 44075483
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | errors: (none)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | pilot state: finished 
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | transexitcode: 0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | exeerrorcode: 0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | exeerrordiag: 
[2025-04-19 14:32:11] 2025-04-19 12:31:55,832 | INFO     | exitcode: 0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | exitmsg: OK
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | cpuconsumptiontime: 13872 s
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | nevents: 400
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | neventsw: 0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | pid: 1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | pgrp: 1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | corecount: 3
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | event service: False
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | sizes: {0: 2426826, 3: 2427032, 11: 2427060, 5255: 2453577, 5257: 2462580, 5263: 2462694}
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | --------------------------------------------------
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | 
[2025-04-19 14:32:11] 2025-04-19 12:31:55,833 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | job 6606785526 has completed (purged errors)
[2025-04-19 14:32:11] 2025-04-19 12:31:55,847 | INFO     | overall cleanup function is called
[2025-04-19 14:32:11] 2025-04-19 12:31:56,853 | INFO     | --- collectZombieJob: --- 10, [1757635]
[2025-04-19 14:32:11] 2025-04-19 12:31:56,854 | INFO     | zombie collector waiting for pid 1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:56,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 14:32:11] 2025-04-19 12:31:56,854 | INFO     | collected zombie processes
[2025-04-19 14:32:11] 2025-04-19 12:31:56,854 | INFO     | will attempt to kill all subprocesses of pid=1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:56,896 | INFO     | process IDs to be killed: [1757635] (in reverse order)
[2025-04-19 14:32:11] 2025-04-19 12:31:56,922 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 14:32:11] 2025-04-19 12:31:56,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 14:32:11] 2025-04-19 12:31:56,924 | INFO     | did not find any defunct processes belonging to 1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | did not find any defunct processes belonging to 1757635
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | ready for new job
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | **************************************
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | **************************************
[2025-04-19 14:32:11] 2025-04-19 12:31:56,925 | INFO     | 
[2025-04-19 14:32:11] 2025-04-19 12:31:56,926 | INFO     | architecture information:
[2025-04-19 14:32:11] 2025-04-19 12:31:56,926 | INFO     | executing command: cat /etc/os-release
[2025-04-19 14:32:11] 2025-04-19 12:31:56,935 | INFO     | cat /etc/os-release:
[2025-04-19 14:32:11] NAME="CentOS Linux"
[2025-04-19 14:32:11] VERSION="7 (Core)"
[2025-04-19 14:32:11] ID="centos"
[2025-04-19 14:32:11] ID_LIKE="rhel fedora"
[2025-04-19 14:32:11] VERSION_ID="7"
[2025-04-19 14:32:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 14:32:11] ANSI_COLOR="0;31"
[2025-04-19 14:32:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 14:32:11] HOME_URL="https://www.centos.org/"
[2025-04-19 14:32:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 14:32:11] 
[2025-04-19 14:32:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 14:32:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 14:32:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 14:32:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 14:32:11] 
[2025-04-19 14:32:11] 2025-04-19 12:31:56,935 | INFO     | **************************************
[2025-04-19 14:32:11] 2025-04-19 12:31:57,439 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | INFO     | sufficient remaining disk space (376446124032 B)
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | INFO     | update_server=False
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 14:32:11] 2025-04-19 12:31:57,452 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | INFO     | aborting loop
[2025-04-19 14:32:11] 2025-04-19 12:31:57,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 14:32:11] 2025-04-19 12:31:57,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 14:32:11] 2025-04-19 12:31:57,705 | INFO     | all data control threads have been joined
[2025-04-19 14:32:11] 2025-04-19 12:31:58,458 | INFO     | [job] retrieve thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,458 | INFO     | [job] queue monitor thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,459 | INFO     | [job] job monitor thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,545 | INFO     | [payload] validate_post thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,710 | INFO     | [data] control thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,806 | INFO     | all payload control threads have been joined
[2025-04-19 14:32:11] 2025-04-19 12:31:58,940 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:58,980 | INFO     | [payload] failed_post thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,076 | INFO     | all job control threads have been joined
[2025-04-19 14:32:11] 2025-04-19 12:31:59,154 | INFO     | [job] validate thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,225 | INFO     | [data] copytool_in thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,604 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,661 | INFO     | [data] copytool_out thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,669 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:31:59,812 | INFO     | [payload] control thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:32:00,081 | INFO     | [job] control thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:32:00,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 14:32:11] 2025-04-19 12:32:04,659 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 14:32:11] 2025-04-19 12:32:06,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140281743431488)>', '<ExcThread(monitor, started 140280728639232)>']
[2025-04-19 14:32:11] 2025-04-19 12:32:06,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 14:32:11] 2025-04-19 12:32:06,502 | INFO     | [monitor] control thread has ended
[2025-04-19 14:32:11] 2025-04-19 12:32:11,172 | INFO     | all workflow threads have been joined
[2025-04-19 14:32:11] 2025-04-19 12:32:11,173 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 14:32:11] 2025-04-19 12:32:11,173 | INFO     | traces error code: 0
[2025-04-19 14:32:11] 2025-04-19 12:32:11,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 14:32:11] 2025-04-19 12:32:11,223 [wrapper] ==== pilot stdout END ====
[2025-04-19 14:32:11] 2025-04-19 12:32:11,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 14:32:11] 2025-04-19 12:32:11,228 [wrapper] pilotpid: 1751199
[2025-04-19 14:32:11] 2025-04-19 12:32:11,230 [wrapper] Pilot exit status: 0
[2025-04-19 14:32:11] 2025-04-19 12:32:11,238 [wrapper] pandaids: 6606785526 6606785526
[2025-04-19 14:32:11] 2025-04-19 12:32:11,255 [wrapper] cleanup supervisor_pilot 1769487 1751200
[2025-04-19 14:32:11] 2025-04-19 12:32:11,257 [wrapper] Test setup, not cleaning
[2025-04-19 14:32:11] 2025-04-19 12:32:11,260 [wrapper] apfmon messages muted
[2025-04-19 14:32:11] 2025-04-19 12:32:11,262 [wrapper] ==== wrapper stdout END ====
[2025-04-19 14:32:11] 2025-04-19 12:32:11,265 [wrapper] ==== wrapper stderr END ====
[2025-04-19 14:32:11]  *** Error codes and diagnostics ***
[2025-04-19 14:32:11]     "exeErrorCode": 0,
[2025-04-19 14:32:11]     "exeErrorDiag": "",
[2025-04-19 14:32:11]     "pilotErrorCode": 0,
[2025-04-19 14:32:11]     "pilotErrorDiag": "",
[2025-04-19 14:32:11]  *** Listing of results directory ***
[2025-04-19 14:32:11] total 638260
[2025-04-19 14:32:11] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc    495897 Apr 18 21:39 pilot3.tar.gz
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc      5111 Apr 18 21:45 queuedata.json
[2025-04-19 14:32:11] -rwx------ 1 boinc boinc     37140 Apr 18 21:47 runpilot2-wrapper.sh
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc       100 Apr 19 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 14:32:11] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 11:24 run_atlas
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc       105 Apr 19 11:24 job.xml
[2025-04-19 14:32:11] -rw-r--r-- 3 boinc boinc 226721576 Apr 19 11:24 EVNT.44075481._002855.pool.root.1
[2025-04-19 14:32:11] -rw-r--r-- 3 boinc boinc 226721576 Apr 19 11:24 ATLAS.root_0
[2025-04-19 14:32:11] drwxrwx--x 2 boinc boinc      4096 Apr 19 11:24 shared
[2025-04-19 14:32:11] -rw-r--r-- 2 boinc boinc    508891 Apr 19 11:24 input.tar.gz
[2025-04-19 14:32:11] -rw-r--r-- 2 boinc boinc     17569 Apr 19 11:24 start_atlas.sh
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc         0 Apr 19 11:24 boinc_lockfile
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc      6936 Apr 19 13:03 init_data.xml
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc      2578 Apr 19 13:03 pandaJob.out
[2025-04-19 14:32:11] -rw------- 1 boinc boinc       424 Apr 19 13:03 setup.sh.local
[2025-04-19 14:32:11] -rw------- 1 boinc boinc    991292 Apr 19 13:03 agis_schedconf.cvmfs.json
[2025-04-19 14:32:11] -rw------- 1 boinc boinc        97 Apr 19 14:31 pilot_heartbeat.json
[2025-04-19 14:32:11] -rw------- 1 boinc boinc 194759568 Apr 19 14:31 HITS.44075483._073508.pool.root.1
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc       530 Apr 19 14:31 boinc_task_state.xml
[2025-04-19 14:32:11] -rw------- 1 boinc boinc      1028 Apr 19 14:31 memory_monitor_summary.json
[2025-04-19 14:32:11] -rw------- 1 boinc boinc   1618536 Apr 19 14:31 agis_ddmendpoints.agis.ALL.json
[2025-04-19 14:32:11] -rw------- 1 boinc boinc    242051 Apr 19 14:31 log.44075483._073508.job.log.tgz.1
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc      8192 Apr 19 14:31 boinc_mmap_file
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc        28 Apr 19 14:31 wrapper_checkpoint.txt
[2025-04-19 14:32:11] -rw------- 1 boinc boinc      7647 Apr 19 14:31 heartbeat.json
[2025-04-19 14:32:11] -rw------- 1 boinc boinc      4480 Apr 19 14:32 pilotlog.txt
[2025-04-19 14:32:11] -rw------- 1 boinc boinc    508723 Apr 19 14:32 log.44075483._073508.job.log.1
[2025-04-19 14:32:11] -rw------- 1 boinc boinc       357 Apr 19 14:32 output.list
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc       620 Apr 19 14:32 runtime_log
[2025-04-19 14:32:11] -rw------- 1 boinc boinc    768000 Apr 19 14:32 result.tar.gz
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc     11184 Apr 19 14:32 runtime_log.err
[2025-04-19 14:32:11] -rw------- 1 boinc boinc       783 Apr 19 14:32 185NDmFr6P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmf2fLDmN2aA9m.diag
[2025-04-19 14:32:11] -rw-r--r-- 1 boinc boinc     23432 Apr 19 14:32 stderr.txt
[2025-04-19 14:32:11] HITS file was successfully produced:
[2025-04-19 14:32:11] -rw------- 1 boinc boinc 194759568 Apr 19 14:31 shared/HITS.pool.root.1
[2025-04-19 14:32:11]  *** Contents of shared directory: ***
[2025-04-19 14:32:11] total 412884
[2025-04-19 14:32:11] -rw-r--r-- 3 boinc boinc 226721576 Apr 19 11:24 ATLAS.root_0
[2025-04-19 14:32:11] -rw-r--r-- 2 boinc boinc    508891 Apr 19 11:24 input.tar.gz
[2025-04-19 14:32:11] -rw-r--r-- 2 boinc boinc     17569 Apr 19 11:24 start_atlas.sh
[2025-04-19 14:32:11] -rw------- 1 boinc boinc 194759568 Apr 19 14:31 HITS.pool.root.1
[2025-04-19 14:32:11] -rw------- 1 boinc boinc    768000 Apr 19 14:32 result.tar.gz
14:32:12 (1747072): run_atlas exited; CPU time 13890.574542
14:32:12 (1747072): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN