Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:55:51 (17607): wrapper (7.7.26015): starting
17:55:51 (17607): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 17:55:51] Arguments: --nthreads 12
[2025-04-18 17:55:51] Threads: 12
[2025-04-18 17:55:51] Checking for CVMFS
[2025-04-18 17:55:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 17:55:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 17:55:51] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 17:55:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 17:55:51] 2.11.2.0 2994 217819 165588 145016 2 56 10996016 20275200 1 130560 0 23770674 99.951 8177467 49485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 17:55:51] CVMFS is ok
[2025-04-18 17:55:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 17:55:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 17:55:51] Further information can be found at the LHC@home message board.
[2025-04-18 17:55:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 17:55:51] Checking for apptainer binary...
[2025-04-18 17:55:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 17:55:51] Running /usr/bin/apptainer --version
[2025-04-18 17:55:51] apptainer version 1.3.2-1.el7
[2025-04-18 17:55:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 17:55:53] c-205-21.aglt2.org
[2025-04-18 17:55:53] apptainer works
[2025-04-18 17:55:53] Set ATHENA_PROC_NUMBER=12
[2025-04-18 17:55:53] Set ATHENA_CORE_NUMBER=12
[2025-04-18 17:55:53] Starting ATLAS job with PandaID=6606783929
[2025-04-18 17:55:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:31:07 (25207): wrapper (7.7.26015): starting
18:31:07 (25207): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 18:31:07] Arguments: --nthreads 12
[2025-04-18 18:31:07] Threads: 12
[2025-04-18 18:31:07] This job has been restarted, cleaning up previous attempt
[2025-04-18 18:31:07] Checking for CVMFS
[2025-04-18 18:31:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 18:31:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 18:31:07] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 18:31:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 18:31:07] 2.11.2.0 2994 217854 166372 145018 2 10 11014724 20275200 1 130560 0 23829386 99.951 8182406 49476 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 18:31:07] CVMFS is ok
[2025-04-18 18:31:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 18:31:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 18:31:07] Further information can be found at the LHC@home message board.
[2025-04-18 18:31:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 18:31:07] Checking for apptainer binary...
[2025-04-18 18:31:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 18:31:07] Running /usr/bin/apptainer --version
[2025-04-18 18:31:08] apptainer version 1.3.2-1.el7
[2025-04-18 18:31:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 18:31:09] c-205-21.aglt2.org
[2025-04-18 18:31:09] apptainer works
[2025-04-18 18:31:09] Set ATHENA_PROC_NUMBER=12
[2025-04-18 18:31:09] Set ATHENA_CORE_NUMBER=12
[2025-04-18 18:31:09] Starting ATLAS job with PandaID=6606783929
[2025-04-18 18:31:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 19:51:21]  *** The last 200 lines of the pilot log: ***
[2025-04-18 19:51:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-18 19:51:21]  is_altstaged=None
[2025-04-18 19:51:21]  is_tar=False
[2025-04-18 19:51:21]  lfn=log.44075483._073143.job.log.tgz.1
[2025-04-18 19:51:21]  mtime=0
[2025-04-18 19:51:21]  protocol_id=None
[2025-04-18 19:51:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 19:51:21]  replicas=None
[2025-04-18 19:51:21]  scope=mc23_13p6TeV
[2025-04-18 19:51:21]  status=None
[2025-04-18 19:51:21]  status_code=0
[2025-04-18 19:51:21]  storage_token=
[2025-04-18 19:51:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606783929/log.44075483._073143.job.log.tgz.1
[2025-04-18 19:51:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/b2/log.44075483._073143.job.log.tgz.1
[2025-04-18 19:51:21]  workdir=None
[2025-04-18 19:51:21] ]
[2025-04-18 19:51:21] 2025-04-18 23:50:53,581 | INFO     | transferring file log.44075483._073143.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606783929/log.44075483._073143.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 19:51:21] 2025-04-18 23:50:53,581 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606783929/log.44075483._073143.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._073143.job
[2025-04-18 19:51:21] 2025-04-18 23:50:53,604 | INFO     | adding to output.list: log.44075483._073143.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/b2/log.44075483._073143.job.log.tg
[2025-04-18 19:51:21] 2025-04-18 23:50:53,605 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 19:51:21] 2025-04-18 23:50:53,605 | INFO     | summary of transferred files:
[2025-04-18 19:51:21] 2025-04-18 23:50:53,605 | INFO     |  -- lfn=log.44075483._073143.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 19:51:21] 2025-04-18 23:50:53,605 | INFO     | stage-out finished correctly
[2025-04-18 19:51:21] 2025-04-18 23:50:54,336 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 19:51:21] 2025-04-18 23:50:55,902 | WARNING  | process 2888 can no longer be monitored (due to stat problems) - aborting
[2025-04-18 19:51:21] 2025-04-18 23:50:55,903 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606783929/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 19:51:21] 2025-04-18 23:50:56,021 | INFO     | number of running child processes to parent process 2888: 1
[2025-04-18 19:51:21] 2025-04-18 23:50:56,022 | INFO     | maximum number of monitored processes: 6
[2025-04-18 19:51:21] 2025-04-18 23:50:56,042 | INFO     | job 6606783929 has state=finished
[2025-04-18 19:51:21] 2025-04-18 23:50:56,042 | INFO     | preparing for final server update for job 6606783929 in state='finished'
[2025-04-18 19:51:21] 2025-04-18 23:50:56,044 | INFO     | this job has now completed (state=finished)
[2025-04-18 19:51:21] 2025-04-18 23:50:56,044 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 19:51:21] 2025-04-18 23:50:56,044 | INFO     | log transfer has been attempted: DONE
[2025-04-18 19:51:21] 2025-04-18 23:50:56,044 | INFO     | job 6606783929 has finished - writing final server update
[2025-04-18 19:51:21] 2025-04-18 23:50:56,045 | INFO     | total number of processed events: 400 (read)
[2025-04-18 19:51:21] 2025-04-18 23:50:56,047 | INFO     | executing command: lscpu
[2025-04-18 19:51:21] 2025-04-18 23:50:56,074 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 19:51:21] 2025-04-18 23:50:58,524 | INFO     | monitor loop #356: job 0:6606783929 is in state 'finished'
[2025-04-18 19:51:21] 2025-04-18 23:50:58,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 19:51:21] 2025-04-18 23:51:00,665 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 19:51:21] 2025-04-18 23:51:00,665 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606783929/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 19:51:21] 2025-04-18 23:51:00,666 | INFO     | extracted standard info from prmon json
[2025-04-18 19:51:21] 2025-04-18 23:51:00,667 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 19:51:21] 2025-04-18 23:51:00,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 19:51:21] 2025-04-18 23:51:00,667 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 19:51:21] 2025-04-18 23:51:00,668 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 19:51:21] 2025-04-18 23:51:00,671 | INFO     | fitting pss+swap vs Time
[2025-04-18 19:51:21] 2025-04-18 23:51:00,671 | INFO     | sum of square deviations: 110960220.0
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | sum of deviations: 17075373759.999994
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | mean x: 1745017951.0
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | mean y: 2656464.9859154928
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | -- intersect: -268533524620.76135
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | intersect: -268533524620.76135
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | chi2: 2.3626429330354424
[2025-04-18 19:51:21] 2025-04-18 23:51:00,672 | INFO     | -- intersect: -268533524620.76135
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | current memory leak: 153.89 B/s (using 71 data points, chi2=2.36)
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | ..............................
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | . Timing measurements:
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | . get job = 0 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | . initial setup = 1 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | . payload setup = 7 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,673 | INFO     | . stage-in = 0 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,674 | INFO     | . payload execution = 4743 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,674 | INFO     | . stage-out = 0 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,674 | INFO     | . log creation = 0 s
[2025-04-18 19:51:21] 2025-04-18 23:51:00,674 | INFO     | ..............................
[2025-04-18 19:51:21] 2025-04-18 23:51:01,022 | INFO     | 
[2025-04-18 19:51:21] 2025-04-18 23:51:01,023 | INFO     | job summary report
[2025-04-18 19:51:21] 2025-04-18 23:51:01,031 | INFO     | --------------------------------------------------
[2025-04-18 19:51:21] 2025-04-18 23:51:01,032 | INFO     | PanDA job id: 6606783929
[2025-04-18 19:51:21] 2025-04-18 23:51:01,032 | INFO     | task id: 44075483
[2025-04-18 19:51:21] 2025-04-18 23:51:01,032 | INFO     | errors: (none)
[2025-04-18 19:51:21] 2025-04-18 23:51:01,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 19:51:21] 2025-04-18 23:51:01,032 | INFO     | pilot state: finished 
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | transexitcode: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | exeerrorcode: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | exeerrordiag: 
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | exitcode: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | exitmsg: OK
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | cpuconsumptiontime: 45026 s
[2025-04-18 19:51:21] 2025-04-18 23:51:01,033 | INFO     | nevents: 400
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | neventsw: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | pid: 2888
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | pgrp: 2888
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | corecount: 12
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | event service: False
[2025-04-18 19:51:21] 2025-04-18 23:51:01,034 | INFO     | sizes: {0: 2426823, 5: 2427029, 11: 2427085, 4755: 2453177, 4756: 2462118, 4757: 2462174, 4763: 2462472}
[2025-04-18 19:51:21] 2025-04-18 23:51:01,035 | INFO     | --------------------------------------------------
[2025-04-18 19:51:21] 2025-04-18 23:51:01,035 | INFO     | 
[2025-04-18 19:51:21] 2025-04-18 23:51:01,035 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 19:51:21] 2025-04-18 23:51:01,060 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,060 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,060 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 19:51:21] 2025-04-18 23:51:01,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 19:51:21] 2025-04-18 23:51:01,063 | INFO     | job 6606783929 has completed (purged errors)
[2025-04-18 19:51:21] 2025-04-18 23:51:01,063 | INFO     | overall cleanup function is called
[2025-04-18 19:51:21] 2025-04-18 23:51:02,071 | INFO     | --- collectZombieJob: --- 10, [2888]
[2025-04-18 19:51:21] 2025-04-18 23:51:02,071 | INFO     | zombie collector waiting for pid 2888
[2025-04-18 19:51:21] 2025-04-18 23:51:02,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 19:51:21] 2025-04-18 23:51:02,071 | INFO     | collected zombie processes
[2025-04-18 19:51:21] 2025-04-18 23:51:02,072 | INFO     | will attempt to kill all subprocesses of pid=2888
[2025-04-18 19:51:21] 2025-04-18 23:51:02,163 | INFO     | process IDs to be killed: [2888] (in reverse order)
[2025-04-18 19:51:21] 2025-04-18 23:51:02,212 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 19:51:21] 2025-04-18 23:51:02,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 19:51:21] 2025-04-18 23:51:02,216 | INFO     | did not find any defunct processes belonging to 2888
[2025-04-18 19:51:21] 2025-04-18 23:51:02,220 | INFO     | did not find any defunct processes belonging to 2888
[2025-04-18 19:51:21] 2025-04-18 23:51:02,220 | INFO     | ready for new job
[2025-04-18 19:51:21] 2025-04-18 23:51:02,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 19:51:21] 2025-04-18 23:51:02,222 | INFO     | **************************************
[2025-04-18 19:51:21] 2025-04-18 23:51:02,222 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 19:51:21] 2025-04-18 23:51:02,222 | INFO     | **************************************
[2025-04-18 19:51:21] 2025-04-18 23:51:02,223 | INFO     | 
[2025-04-18 19:51:21] 2025-04-18 23:51:02,223 | INFO     | architecture information:
[2025-04-18 19:51:21] 2025-04-18 23:51:02,224 | INFO     | executing command: cat /etc/os-release
[2025-04-18 19:51:21] 2025-04-18 23:51:02,236 | INFO     | cat /etc/os-release:
[2025-04-18 19:51:21] NAME="CentOS Linux"
[2025-04-18 19:51:21] VERSION="7 (Core)"
[2025-04-18 19:51:21] ID="centos"
[2025-04-18 19:51:21] ID_LIKE="rhel fedora"
[2025-04-18 19:51:21] VERSION_ID="7"
[2025-04-18 19:51:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 19:51:21] ANSI_COLOR="0;31"
[2025-04-18 19:51:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 19:51:21] HOME_URL="https://www.centos.org/"
[2025-04-18 19:51:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 19:51:21] 
[2025-04-18 19:51:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 19:51:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 19:51:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 19:51:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 19:51:21] 
[2025-04-18 19:51:21] 2025-04-18 23:51:02,236 | INFO     | **************************************
[2025-04-18 19:51:21] 2025-04-18 23:51:02,739 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 19:51:21] 2025-04-18 23:51:02,755 | INFO     | sufficient remaining disk space (29394731008 B)
[2025-04-18 19:51:21] 2025-04-18 23:51:02,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 19:51:21] 2025-04-18 23:51:02,756 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 19:51:21] 2025-04-18 23:51:02,756 | INFO     | update_server=False
[2025-04-18 19:51:21] 2025-04-18 23:51:02,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 19:51:21] 2025-04-18 23:51:02,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 19:51:21] 2025-04-18 23:51:02,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 19:51:21] 2025-04-18 23:51:02,757 | INFO     | aborting loop
[2025-04-18 19:51:21] 2025-04-18 23:51:02,757 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 19:51:21] 2025-04-18 23:51:02,758 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 19:51:21] 2025-04-18 23:51:02,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 19:51:21] 2025-04-18 23:51:02,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 19:51:21] 2025-04-18 23:51:02,976 | INFO     | all job control threads have been joined
[2025-04-18 19:51:21] 2025-04-18 23:51:03,520 | INFO     | all payload control threads have been joined
[2025-04-18 19:51:21] 2025-04-18 23:51:03,702 | INFO     | all data control threads have been joined
[2025-04-18 19:51:21] 2025-04-18 23:51:03,762 | INFO     | [job] retrieve thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,762 | INFO     | [job] job monitor thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,762 | INFO     | [job] queue monitor thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,888 | INFO     | [payload] failed_post thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,968 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,980 | INFO     | [job] control thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:03,990 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:04,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 19:51:21] 2025-04-18 23:51:04,284 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:04,522 | INFO     | [payload] control thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:04,530 | INFO     | [data] copytool_in thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:04,707 | INFO     | [data] control thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:04,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 19:51:21] 2025-04-18 23:51:05,078 | INFO     | [payload] validate_post thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:05,182 | INFO     | [job] validate thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:06,211 | INFO     | [data] copytool_out thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:08,933 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:13,243 | INFO     | job.realtimelogging is not enabled
[2025-04-18 19:51:21] 2025-04-18 23:51:14,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 19:51:21] 2025-04-18 23:51:15,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470518196032)>', '<ExcThread(monitor, started 140469539411712)>']
[2025-04-18 19:51:21] 2025-04-18 23:51:15,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 19:51:21] 2025-04-18 23:51:15,816 | INFO     | [monitor] control thread has ended
[2025-04-18 19:51:21] 2025-04-18 23:51:20,713 | INFO     | all workflow threads have been joined
[2025-04-18 19:51:21] 2025-04-18 23:51:20,713 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 19:51:21] 2025-04-18 23:51:20,713 | INFO     | traces error code: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:20,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 19:51:21] 2025-04-18 23:51:20,811 [wrapper] ==== pilot stdout END ====
[2025-04-18 19:51:21] 2025-04-18 23:51:20,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 19:51:21] 2025-04-18 23:51:20,818 [wrapper] pilotpid: 28825
[2025-04-18 19:51:21] 2025-04-18 23:51:20,822 [wrapper] Pilot exit status: 0
[2025-04-18 19:51:21] 2025-04-18 23:51:20,838 [wrapper] pandaids: 6606783929 6606783929
[2025-04-18 19:51:21] 2025-04-18 23:51:20,877 [wrapper] cleanup supervisor_pilot 25756 28826
[2025-04-18 19:51:21] 2025-04-18 23:51:20,881 [wrapper] Test setup, not cleaning
[2025-04-18 19:51:21] 2025-04-18 23:51:20,885 [wrapper] apfmon messages muted
[2025-04-18 19:51:21] 2025-04-18 23:51:20,889 [wrapper] ==== wrapper stdout END ====
[2025-04-18 19:51:21] 2025-04-18 23:51:20,893 [wrapper] ==== wrapper stderr END ====
[2025-04-18 19:51:21]  *** Error codes and diagnostics ***
[2025-04-18 19:51:21]     "exeErrorCode": 0,
[2025-04-18 19:51:21]     "exeErrorDiag": "",
[2025-04-18 19:51:21]     "pilotErrorCode": 0,
[2025-04-18 19:51:21]     "pilotErrorDiag": "",
[2025-04-18 19:51:21]  *** Listing of results directory ***
[2025-04-18 19:51:21] total 633544
[2025-04-18 19:51:21] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 15:10 queuedata.json
[2025-04-18 19:51:21] -rwx------ 1 boincer umatlas     37140 Apr 18 15:11 runpilot2-wrapper.sh
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 15:11 pilot3.tar.gz
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas       100 Apr 18 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 19:51:21] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 17:55 run_atlas
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas       105 Apr 18 17:55 job.xml
[2025-04-18 19:51:21] -rw-r--r-- 3 boincer umatlas 225708204 Apr 18 17:55 EVNT.44075481._002841.pool.root.1
[2025-04-18 19:51:21] -rw-r--r-- 3 boincer umatlas 225708204 Apr 18 17:55 ATLAS.root_0
[2025-04-18 19:51:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 17:55 start_atlas.sh
[2025-04-18 19:51:21] drwxrwx--x 2 boincer umatlas      4096 Apr 18 17:55 shared
[2025-04-18 19:51:21] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 17:55 input.tar.gz
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas         0 Apr 18 17:55 boinc_lockfile
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas   1618536 Apr 18 17:56 agis_ddmendpoints.agis.ALL.json
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 18:31 pandaJob.out
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas       424 Apr 18 18:31 setup.sh.local
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas    991300 Apr 18 18:31 agis_schedconf.cvmfs.json
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas      5868 Apr 18 19:47 init_data.xml
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas        96 Apr 18 19:50 pilot_heartbeat.json
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas 191848195 Apr 18 19:50 HITS.44075483._073143.pool.root.1
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas       529 Apr 18 19:50 boinc_task_state.xml
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas      1057 Apr 18 19:50 memory_monitor_summary.json
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas        27 Apr 18 19:50 wrapper_checkpoint.txt
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 19:50 boinc_mmap_file
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas    354696 Apr 18 19:50 log.44075483._073143.job.log.tgz.1
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas      7748 Apr 18 19:51 heartbeat.json
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas      4548 Apr 18 19:51 pilotlog.txt
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas    454596 Apr 18 19:51 log.44075483._073143.job.log.1
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas       357 Apr 18 19:51 output.list
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas       620 Apr 18 19:51 runtime_log
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas    829440 Apr 18 19:51 result.tar.gz
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas       783 Apr 18 19:51 xVQNDmzI6P7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmwU5KDmBGPyPn.diag
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas     11100 Apr 18 19:51 runtime_log.err
[2025-04-18 19:51:21] -rw-r--r-- 1 boincer umatlas     23491 Apr 18 19:51 stderr.txt
[2025-04-18 19:51:21] HITS file was successfully produced:
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas 191848195 Apr 18 19:50 shared/HITS.pool.root.1
[2025-04-18 19:51:21]  *** Contents of shared directory: ***
[2025-04-18 19:51:21] total 409108
[2025-04-18 19:51:21] -rw-r--r-- 3 boincer umatlas 225708204 Apr 18 17:55 ATLAS.root_0
[2025-04-18 19:51:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 17:55 start_atlas.sh
[2025-04-18 19:51:21] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 17:55 input.tar.gz
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas 191848195 Apr 18 19:50 HITS.pool.root.1
[2025-04-18 19:51:21] -rw------- 1 boincer umatlas    829440 Apr 18 19:51 result.tar.gz
19:51:22 (25207): run_atlas exited; CPU time 45006.627062
19:51:22 (25207): called boinc_finish(0)

</stderr_txt>
]]>

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