Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 15:32:11 (5596): Detected: vboxwrapper 26206
2025-04-18 15:32:11 (5596): Detected: BOINC client v8.0.4
2025-04-18 15:32:23 (5596): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-18 15:32:34 (5596): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 15:32:45 (5596): Create VM. (boinc_bdf1a0acbaac92cd, slot#4)
2025-04-18 15:32:57 (5596): Setting Memory Size for VM. (4300MB)
2025-04-18 15:33:03 (5596): Setting CPU Count for VM. (3)
2025-04-18 15:33:09 (5596): Setting Chipset Options for VM.
2025-04-18 15:33:15 (5596): Setting Graphics Controller Options for VM.
2025-04-18 15:33:25 (5596): Setting Boot Options for VM.
2025-04-18 15:33:31 (5596): Setting Network Configuration for NAT.
2025-04-18 15:33:37 (5596): Enabling VM Network Access.
2025-04-18 15:33:43 (5596): Disabling USB Support for VM.
2025-04-18 15:33:49 (5596): Disabling COM Port Support for VM.
2025-04-18 15:33:55 (5596): Disabling LPT Port Support for VM.
2025-04-18 15:34:01 (5596): Disabling Audio Support for VM.
2025-04-18 15:34:07 (5596): Disabling Clipboard Support for VM.
2025-04-18 15:34:13 (5596): Disabling Drag and Drop Support for VM.
2025-04-18 15:34:19 (5596): Adding storage controller(s) to VM.
2025-04-18 15:34:19 (5596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 15:35:02 (5596): Adding VirtualBox Guest Additions to VM.
2025-04-18 15:35:08 (5596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 15:35:14 (5596): forwarding host port 60128 to guest port 80
2025-04-18 15:35:20 (5596): Enabling remote desktop for VM.
2025-04-18 15:35:32 (5596): Enabling shared directory for VM.
2025-04-18 15:35:46 (5596): Starting VM using VBoxManage interface. (boinc_bdf1a0acbaac92cd, slot#4)
2025-04-18 15:36:01 (5596): Successfully started VM. (PID = '14852')
2025-04-18 15:36:01 (5596): Reporting VM Process ID to BOINC.
2025-04-18 15:36:01 (5596): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-18 15:36:01 (5596): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 15:36:01 (5596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 15:36:01 (5596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 15:36:01 (5596): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 15:36:01 (5596): Detected: Web Application Enabled (http://localhost:60128)
2025-04-18 15:36:01 (5596): Detected: Remote Desktop Enabled (localhost:60140)
2025-04-18 15:36:07 (5596): Preference change detected
2025-04-18 15:36:07 (5596): Setting CPU throttle for VM. (100%)
2025-04-18 15:36:12 (5596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 15:36:12 (5596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 15:36:12 (5596): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 15:36:12 (5596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 15:36:12 (5596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 15:36:12 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 15:36:18 (5596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 15:36:18 (5596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 15:36:18 (5596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 15:36:25 (5596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 15:36:25 (5596): Guest Log: 00:00:00.000217 main     Log opened 2025-04-18T15:36:22.315975000Z
2025-04-18 15:36:25 (5596): Guest Log: 00:00:00.000475 main     OS Product: Linux
2025-04-18 15:36:25 (5596): Guest Log: 00:00:00.000531 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 15:36:25 (5596): Guest Log: 00:00:00.000583 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 15:36:25 (5596): Guest Log: 00:00:00.000636 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 15:36:30 (5596): Guest Log: 00:00:00.000637 main     Process ID: 1288
2025-04-18 15:36:30 (5596): Guest Log: 00:00:00.000639 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 15:36:30 (5596): Guest Log: 00:00:00.001896 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 15:36:30 (5596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 15:36:30 (5596): Guest Log: [INFO] Mounting shared directory
2025-04-18 15:36:30 (5596): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 15:36:34 (5596): Guest Log: 00:00:10.007779 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 950 627 000ns (GuestNow=1 745 015 794 270 147 000 ns GuestLast=1 744 990 582 319 520 000 ns fSetTimeLastLoop=true )
2025-04-18 15:36:48 (5596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 15:36:48 (5596): Guest Log: [INFO] Detected branch: prod
2025-04-18 15:36:49 (5596): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 15:36:49 (5596): Guest Log: Copying input files
2025-04-18 15:36:54 (5596): Guest Log: Copied input files into RunAtlas.
2025-04-18 15:36:54 (5596): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 15:36:54 (5596): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 15:36:54 (5596): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 15:36:54 (5596): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 15:37:02 (5596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 15:37:02 (5596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 15:37:07 (5596): Guest Log: 2.6.3.0 1572 0 32212 145018 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 15:37:07 (5596): Guest Log: copied the webapp to /var/www
2025-04-18 15:37:07 (5596): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-18 15:37:07 (5596): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-18 15:37:07 (5596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 15:37:07 (5596): Guest Log:  *** Starting ATLAS job. (PandaID=6602130679 taskID=44075483) ***
2025-04-18 17:23:10 (5596): Status Report: Elapsed Time: '6000.383867'
2025-04-18 17:23:10 (5596): Status Report: CPU Time: '15219.046875'
2025-04-18 19:11:52 (5596): Status Report: Elapsed Time: '12000.684448'
2025-04-18 19:11:52 (5596): Status Report: CPU Time: '34718.000000'
2025-04-18 21:01:58 (5596): Status Report: Elapsed Time: '18001.229097'
2025-04-18 21:01:59 (5596): Status Report: CPU Time: '54465.359375'
2025-04-18 22:52:27 (5596): Status Report: Elapsed Time: '24001.928698'
2025-04-18 22:52:27 (5596): Status Report: CPU Time: '74282.250000'
2025-04-19 00:42:39 (5596): Status Report: Elapsed Time: '30002.101116'
2025-04-19 00:42:39 (5596): Status Report: CPU Time: '94024.250000'
2025-04-19 01:41:13 (5596): Guest Log:  *** Job finished ***
2025-04-19 01:41:13 (5596): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:03,183 | INFO     | [payload] validate_post thread has finished
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:03,566 | INFO     | [payload] failed_post thread has finished
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:05,627 | INFO     | [data] queue_monitor thread has finished
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:06,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231104825152)>', '<ExcThread(monitor, started 140230069839616)>']
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:07,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:07,015 | INFO     | [monitor] control thread has ended
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,684 | INFO     | all workflow threads have been joined
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,684 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,684 | INFO     | traces error code: 0
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,820 [wrapper] ==== pilot stdout END ====
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,826 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,831 [wrapper] pilotpid: 5896
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,839 [wrapper] Pilot exit status: 0
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:11,952 [wrapper] pandaids: 6602130679
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:12,001 [wrapper] cleanup supervisor_pilot 14559 5897
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:12,008 [wrapper] Test setup, not cleaning
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:12,014 [wrapper] apfmon messages muted
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:12,020 [wrapper] ==== wrapper stdout END ====
2025-04-19 01:41:13 (5596): Guest Log: 2025-04-19 08:41:12,026 [wrapper] ==== wrapper stderr END ====
2025-04-19 01:41:13 (5596): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 01:41:13 (5596): Guest Log:     "exeErrorCode": 0,
2025-04-19 01:41:13 (5596): Guest Log:     "exeErrorDiag": "",
2025-04-19 01:41:13 (5596): Guest Log:     "pilotErrorCode": 0,
2025-04-19 01:41:13 (5596): Guest Log:     "pilotErrorDiag": "",
2025-04-19 01:41:13 (5596): Guest Log:  *** Listing of results directory ***
2025-04-19 01:41:13 (5596): Guest Log: total 203928
2025-04-19 01:41:13 (5596): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 15:02 pilot3.tar.gz
2025-04-19 01:41:13 (5596): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 15:05 queuedata.json
2025-04-19 01:41:13 (5596): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 15:05 runpilot2-wrapper.sh
2025-04-19 01:41:13 (5596): Guest Log: -rwxr-xr-x. 1 atlas atlas      9082 Apr 18 22:36 init_data.xml
2025-04-19 01:41:13 (5596): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr 18 22:36 input.tar.gz
2025-04-19 01:41:13 (5596): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 22:36 start_atlas.sh
2025-04-19 01:41:13 (5596): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 22:36 EVNT.44075481._000716.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 01:41:13 (5596): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 18 22:37 pandaJob.out
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 22:37 setup.sh.local
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas    991300 Apr 18 22:38 agis_schedconf.cvmfs.json
2025-04-19 01:41:13 (5596): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 22:39 pilot3
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas 198230702 Apr 19 08:39 HITS.44075483._018094.pool.root.1
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 08:40 pilot_heartbeat.json
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas      1043 Apr 19 08:40 memory_monitor_summary.json
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 08:40 agis_ddmendpoints.agis.ALL.json
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas    483658 Apr 19 08:40 log.44075483._018094.job.log.tgz.1
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas      7689 Apr 19 08:40 heartbeat.json
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 19 08:41 pilotlog.txt
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas   2911920 Apr 19 08:41 log.44075483._018094.job.log.1
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 08:41 output.list
2025-04-19 01:41:13 (5596): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 08:41 runtime_log
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas   3409920 Apr 19 08:41 result.tar.gz
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas       658 Apr 19 08:41 HkaKDmqYaO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmeSWLDmLuDomn.diag
2025-04-19 01:41:13 (5596): Guest Log: -rw-r--r--. 1 atlas atlas     10923 Apr 19 08:41 runtime_log.err
2025-04-19 01:41:13 (5596): Guest Log: Looking for outputfile HITS.44075483._018094.pool.root.1
2025-04-19 01:41:13 (5596): Guest Log: HITS file was successfully produced
2025-04-19 01:41:13 (5596): Guest Log: -rw-------. 1 atlas atlas 198230702 Apr 19 08:39 /home/atlas/RunAtlas/HITS.44075483._018094.pool.root.1
2025-04-19 01:41:14 (5596): Guest Log: Successfully finished the ATLAS job!
2025-04-19 01:41:14 (5596): Guest Log: Copying the results back to the shared directory!
2025-04-19 01:41:15 (5596): Guest Log:  *** Contents of shared directory: ***
2025-04-19 01:41:15 (5596): Guest Log: total 414476
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root 222228768 Apr 18 22:32 ATLAS.root_0
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root 198230702 Apr 19 08:41 HITS.pool.root.1
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root      9082 Apr 18 22:32 init_data.xml
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr 18 21:54 input.tar.gz
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root   3409920 Apr 19 08:41 result.tar.gz
2025-04-19 01:41:15 (5596): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 21:54 start_atlas.sh
2025-04-19 01:41:15 (5596): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 01:41:15 (5596): VM Completion File Detected.
2025-04-19 01:41:15 (5596): Powering off VM.
2025-04-19 01:41:17 (5596): Successfully stopped VM.
2025-04-19 01:41:17 (5596): Deregistering VM. (boinc_bdf1a0acbaac92cd, slot#4)
2025-04-19 01:41:17 (5596): Removing network bandwidth throttle group from VM.
2025-04-19 01:41:17 (5596): Removing VM from VirtualBox.
01:41:22 (5596): called boinc_finish(0)

</stderr_txt>
]]>

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