Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:42:26 (31592): wrapper (7.7.26015): starting
17:42:26 (31592): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 17:42:26] Arguments: --nthreads 12
[2025-04-18 17:42:26] Threads: 12
[2025-04-18 17:42:26] Checking for CVMFS
[2025-04-18 17:42:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 17:42:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 17:42:26] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 17:42:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 17:42:26] 2.11.2.0 20204 374312 165424 145016 0 56 19763481 20275200 1 130560 0 22794755 99.969 7461264 50481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 17:42:26] CVMFS is ok
[2025-04-18 17:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 17:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 17:42:26] Further information can be found at the LHC@home message board.
[2025-04-18 17:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 17:42:26] Checking for apptainer binary...
[2025-04-18 17:42:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 17:42:26] Running /usr/bin/apptainer --version
[2025-04-18 17:42:26] apptainer version 1.3.2-1.el7
[2025-04-18 17:42:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 17:42:28] c-205-28.aglt2.org
[2025-04-18 17:42:28] apptainer works
[2025-04-18 17:42:28] Set ATHENA_PROC_NUMBER=12
[2025-04-18 17:42:28] Set ATHENA_CORE_NUMBER=12
[2025-04-18 17:42:28] Starting ATLAS job with PandaID=6606629520
[2025-04-18 17:42:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 19:08:40]  *** The last 200 lines of the pilot log: ***
[2025-04-18 19:08:40]  filetype=log
[2025-04-18 19:08:40]  guid=36322218-4d13-4d7c-bfab-1e653770b1b7
[2025-04-18 19:08:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-18 19:08:40]  is_altstaged=None
[2025-04-18 19:08:40]  is_tar=False
[2025-04-18 19:08:40]  lfn=log.44075483._070957.job.log.tgz.1
[2025-04-18 19:08:40]  mtime=0
[2025-04-18 19:08:40]  protocol_id=None
[2025-04-18 19:08:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 19:08:40]  replicas=None
[2025-04-18 19:08:40]  scope=mc23_13p6TeV
[2025-04-18 19:08:40]  status=None
[2025-04-18 19:08:40]  status_code=0
[2025-04-18 19:08:40]  storage_token=
[2025-04-18 19:08:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606629520/log.44075483._070957.job.log.tgz.1
[2025-04-18 19:08:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/80/log.44075483._070957.job.log.tgz.1
[2025-04-18 19:08:40]  workdir=None
[2025-04-18 19:08:40] ]
[2025-04-18 19:08:40] 2025-04-18 23:08:20,131 | INFO     | transferring file log.44075483._070957.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606629520/log.44075483._070957.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 19:08:40] 2025-04-18 23:08:20,131 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606629520/log.44075483._070957.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._070957.job
[2025-04-18 19:08:40] 2025-04-18 23:08:20,156 | INFO     | adding to output.list: log.44075483._070957.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/80/log.44075483._070957.job.log.tg
[2025-04-18 19:08:40] 2025-04-18 23:08:20,157 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 19:08:40] 2025-04-18 23:08:20,157 | INFO     | summary of transferred files:
[2025-04-18 19:08:40] 2025-04-18 23:08:20,158 | INFO     |  -- lfn=log.44075483._070957.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 19:08:40] 2025-04-18 23:08:20,158 | INFO     | stage-out finished correctly
[2025-04-18 19:08:40] 2025-04-18 23:08:20,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 19:08:40] 2025-04-18 23:08:21,309 | INFO     | job 6606629520 has state=finished
[2025-04-18 19:08:40] 2025-04-18 23:08:21,310 | INFO     | preparing for final server update for job 6606629520 in state='finished'
[2025-04-18 19:08:40] 2025-04-18 23:08:21,310 | INFO     | this job has now completed (state=finished)
[2025-04-18 19:08:40] 2025-04-18 23:08:21,310 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 19:08:40] 2025-04-18 23:08:21,310 | INFO     | log transfer has been attempted: DONE
[2025-04-18 19:08:40] 2025-04-18 23:08:21,311 | INFO     | job 6606629520 has finished - writing final server update
[2025-04-18 19:08:40] 2025-04-18 23:08:21,311 | INFO     | total number of processed events: 400 (read)
[2025-04-18 19:08:40] 2025-04-18 23:08:21,313 | INFO     | executing command: lscpu
[2025-04-18 19:08:40] 2025-04-18 23:08:21,339 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 19:08:40] 2025-04-18 23:08:22,476 | INFO     | monitor loop #385: job 0:6606629520 is in state 'finished'
[2025-04-18 19:08:40] 2025-04-18 23:08:22,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 19:08:40] 2025-04-18 23:08:24,979 | INFO     | monitor loop #386: job 0:6606629520 is in state 'finished'
[2025-04-18 19:08:40] 2025-04-18 23:08:24,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,046 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 19:08:40] 2025-04-18 23:08:26,046 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606629520/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,047 | INFO     | extracted standard info from prmon json
[2025-04-18 19:08:40] 2025-04-18 23:08:26,047 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 19:08:40] 2025-04-18 23:08:26,048 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 19:08:40] 2025-04-18 23:08:26,048 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 19:08:40] 2025-04-18 23:08:26,048 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 19:08:40] 2025-04-18 23:08:26,051 | INFO     | fitting pss+swap vs Time
[2025-04-18 19:08:40] 2025-04-18 23:08:26,051 | INFO     | sum of square deviations: 141539398.0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,052 | INFO     | sum of deviations: 19859179702.999996
[2025-04-18 19:08:40] 2025-04-18 23:08:26,052 | INFO     | mean x: 1745015214.0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,052 | INFO     | mean y: 2577185.7662337665
[2025-04-18 19:08:40] 2025-04-18 23:08:26,052 | INFO     | -- intersect: -244837878609.411
[2025-04-18 19:08:40] 2025-04-18 23:08:26,052 | INFO     | intersect: -244837878609.411
[2025-04-18 19:08:40] 2025-04-18 23:08:26,053 | INFO     | chi2: 2.1574501855552786
[2025-04-18 19:08:40] 2025-04-18 23:08:26,053 | INFO     | -- intersect: -244837878609.411
[2025-04-18 19:08:40] 2025-04-18 23:08:26,053 | INFO     | current memory leak: 140.31 B/s (using 77 data points, chi2=2.16)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,053 | INFO     | ..............................
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . Timing measurements:
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . get job = 0 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . initial setup = 3 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . payload setup = 7 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . stage-in = 0 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . payload execution = 5109 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,054 | INFO     | . stage-out = 0 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,055 | INFO     | . log creation = 0 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,055 | INFO     | ..............................
[2025-04-18 19:08:40] 2025-04-18 23:08:26,139 | INFO     | 
[2025-04-18 19:08:40] 2025-04-18 23:08:26,139 | INFO     | job summary report
[2025-04-18 19:08:40] 2025-04-18 23:08:26,139 | INFO     | --------------------------------------------------
[2025-04-18 19:08:40] 2025-04-18 23:08:26,139 | INFO     | PanDA job id: 6606629520
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | task id: 44075483
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | errors: (none)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | pilot state: finished 
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | transexitcode: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,140 | INFO     | exeerrorcode: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | exeerrordiag: 
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | exitcode: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | exitmsg: OK
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | cpuconsumptiontime: 48590 s
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | nevents: 400
[2025-04-18 19:08:40] 2025-04-18 23:08:26,141 | INFO     | neventsw: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | pid: 9976
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | pgrp: 9976
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | corecount: 12
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | event service: False
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | sizes: {0: 2426653, 1: 2426852, 6: 2427058, 11: 2427086, 5121: 2453262, 5122: 2462387, 5128: 2462501}
[2025-04-18 19:08:40] 2025-04-18 23:08:26,142 | INFO     | --------------------------------------------------
[2025-04-18 19:08:40] 2025-04-18 23:08:26,143 | INFO     | 
[2025-04-18 19:08:40] 2025-04-18 23:08:26,143 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 19:08:40] 2025-04-18 23:08:26,166 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,166 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 19:08:40] 2025-04-18 23:08:26,170 | INFO     | job 6606629520 has completed (purged errors)
[2025-04-18 19:08:40] 2025-04-18 23:08:26,170 | INFO     | overall cleanup function is called
[2025-04-18 19:08:40] 2025-04-18 23:08:27,178 | INFO     | --- collectZombieJob: --- 10, [9976]
[2025-04-18 19:08:40] 2025-04-18 23:08:27,178 | INFO     | zombie collector waiting for pid 9976
[2025-04-18 19:08:40] 2025-04-18 23:08:27,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 19:08:40] 2025-04-18 23:08:27,179 | INFO     | collected zombie processes
[2025-04-18 19:08:40] 2025-04-18 23:08:27,179 | INFO     | will attempt to kill all subprocesses of pid=9976
[2025-04-18 19:08:40] 2025-04-18 23:08:27,270 | INFO     | process IDs to be killed: [9976] (in reverse order)
[2025-04-18 19:08:40] 2025-04-18 23:08:27,320 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 19:08:40] 2025-04-18 23:08:27,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 19:08:40] 2025-04-18 23:08:27,324 | INFO     | did not find any defunct processes belonging to 9976
[2025-04-18 19:08:40] 2025-04-18 23:08:27,327 | INFO     | did not find any defunct processes belonging to 9976
[2025-04-18 19:08:40] 2025-04-18 23:08:27,327 | INFO     | ready for new job
[2025-04-18 19:08:40] 2025-04-18 23:08:27,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 19:08:40] 2025-04-18 23:08:27,328 | INFO     | **************************************
[2025-04-18 19:08:40] 2025-04-18 23:08:27,328 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 19:08:40] 2025-04-18 23:08:27,328 | INFO     | **************************************
[2025-04-18 19:08:40] 2025-04-18 23:08:27,328 | INFO     | 
[2025-04-18 19:08:40] 2025-04-18 23:08:27,329 | INFO     | architecture information:
[2025-04-18 19:08:40] 2025-04-18 23:08:27,329 | INFO     | executing command: cat /etc/os-release
[2025-04-18 19:08:40] 2025-04-18 23:08:27,343 | INFO     | cat /etc/os-release:
[2025-04-18 19:08:40] NAME="CentOS Linux"
[2025-04-18 19:08:40] VERSION="7 (Core)"
[2025-04-18 19:08:40] ID="centos"
[2025-04-18 19:08:40] ID_LIKE="rhel fedora"
[2025-04-18 19:08:40] VERSION_ID="7"
[2025-04-18 19:08:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 19:08:40] ANSI_COLOR="0;31"
[2025-04-18 19:08:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 19:08:40] HOME_URL="https://www.centos.org/"
[2025-04-18 19:08:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 19:08:40] 
[2025-04-18 19:08:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 19:08:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 19:08:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 19:08:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 19:08:40] 
[2025-04-18 19:08:40] 2025-04-18 23:08:27,343 | INFO     | **************************************
[2025-04-18 19:08:40] 2025-04-18 23:08:27,793 | INFO     | PID=2894 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-18 19:08:40] 2025-04-18 23:08:27,846 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 19:08:40] 2025-04-18 23:08:27,863 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-04-18 19:08:40] 2025-04-18 23:08:27,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 19:08:40] 2025-04-18 23:08:27,863 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 19:08:40] 2025-04-18 23:08:27,864 | INFO     | update_server=False
[2025-04-18 19:08:40] 2025-04-18 23:08:27,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 19:08:40] 2025-04-18 23:08:27,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 19:08:40] 2025-04-18 23:08:27,864 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 19:08:40] 2025-04-18 23:08:27,865 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 19:08:40] 2025-04-18 23:08:27,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 19:08:40] 2025-04-18 23:08:27,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 19:08:40] 2025-04-18 23:08:28,257 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 19:08:40] 2025-04-18 23:08:28,375 | INFO     | all job control threads have been joined
[2025-04-18 19:08:40] 2025-04-18 23:08:28,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 19:08:40] 2025-04-18 23:08:28,488 | INFO     | aborting loop
[2025-04-18 19:08:40] 2025-04-18 23:08:28,823 | INFO     | all data control threads have been joined
[2025-04-18 19:08:40] 2025-04-18 23:08:28,866 | INFO     | [job] queue monitor thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:28,869 | INFO     | [job] retrieve thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:28,890 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,160 | INFO     | all payload control threads have been joined
[2025-04-18 19:08:40] 2025-04-18 23:08:29,201 | INFO     | [data] copytool_in thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,381 | INFO     | [job] control thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,412 | INFO     | [payload] failed_post thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,493 | INFO     | [job] job monitor thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,720 | INFO     | [job] validate thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,828 | INFO     | [data] control thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:29,987 | INFO     | [payload] validate_post thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:30,035 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:30,165 | INFO     | [payload] control thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:30,260 | INFO     | [data] copytool_out thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:30,331 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:30,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 19:08:40] 2025-04-18 23:08:34,845 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 19:08:40] 2025-04-18 23:08:35,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140248690399040)>', '<ExcThread(monitor, started 140247568467712)>']
[2025-04-18 19:08:40] 2025-04-18 23:08:35,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 19:08:40] 2025-04-18 23:08:35,902 | INFO     | [monitor] control thread has ended
[2025-04-18 19:08:40] 2025-04-18 23:08:40,178 | INFO     | all workflow threads have been joined
[2025-04-18 19:08:40] 2025-04-18 23:08:40,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 19:08:40] 2025-04-18 23:08:40,183 | INFO     | traces error code: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:40,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 19:08:40] 2025-04-18 23:08:40,274 [wrapper] ==== pilot stdout END ====
[2025-04-18 19:08:40] 2025-04-18 23:08:40,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 19:08:40] 2025-04-18 23:08:40,282 [wrapper] pilotpid: 2894
[2025-04-18 19:08:40] 2025-04-18 23:08:40,286 [wrapper] Pilot exit status: 0
[2025-04-18 19:08:40] 2025-04-18 23:08:40,302 [wrapper] pandaids: 6606629520
[2025-04-18 19:08:40] 2025-04-18 23:08:40,339 [wrapper] cleanup supervisor_pilot  1357 2895
[2025-04-18 19:08:40] 2025-04-18 23:08:40,343 [wrapper] Test setup, not cleaning
[2025-04-18 19:08:40] 2025-04-18 23:08:40,346 [wrapper] apfmon messages muted
[2025-04-18 19:08:40] 2025-04-18 23:08:40,350 [wrapper] ==== wrapper stdout END ====
[2025-04-18 19:08:40] 2025-04-18 23:08:40,354 [wrapper] ==== wrapper stderr END ====
[2025-04-18 19:08:40]  *** Error codes and diagnostics ***
[2025-04-18 19:08:40]     "exeErrorCode": 0,
[2025-04-18 19:08:40]     "exeErrorDiag": "",
[2025-04-18 19:08:40]     "pilotErrorCode": 0,
[2025-04-18 19:08:40]     "pilotErrorDiag": "",
[2025-04-18 19:08:40]  *** Listing of results directory ***
[2025-04-18 19:08:40] total 425824
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 11:37 pilot3.tar.gz
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 11:38 queuedata.json
[2025-04-18 19:08:40] -rwx------ 1 boincer umatlas     37140 Apr 18 11:38 runpilot2-wrapper.sh
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas       100 Apr 18 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 19:08:40] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 17:42 run_atlas
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas       105 Apr 18 17:42 job.xml
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas 226574815 Apr 18 17:42 EVNT.44075481._002756.pool.root.1
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 17:42 start_atlas.sh
[2025-04-18 19:08:40] drwxrwx--x 2 boincer umatlas      4096 Apr 18 17:42 shared
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas    508887 Apr 18 17:42 input.tar.gz
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas         0 Apr 18 17:42 boinc_lockfile
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 17:42 pandaJob.out
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas       424 Apr 18 17:42 setup.sh.local
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas    991300 Apr 18 17:42 agis_schedconf.cvmfs.json
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas   1618536 Apr 18 17:42 agis_ddmendpoints.agis.ALL.json
[2025-04-18 19:08:40] drwx------ 4 boincer umatlas      4096 Apr 18 17:42 pilot3
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas      5867 Apr 18 19:04 init_data.xml
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas        95 Apr 18 19:07 pilot_heartbeat.json
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas 203895731 Apr 18 19:07 HITS.44075483._070957.pool.root.1
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 19:08 boinc_mmap_file
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas        27 Apr 18 19:08 wrapper_checkpoint.txt
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas       529 Apr 18 19:08 boinc_task_state.xml
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas      1061 Apr 18 19:08 memory_monitor_summary.json
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas    364719 Apr 18 19:08 log.44075483._070957.job.log.tgz.1
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas      7755 Apr 18 19:08 heartbeat.json
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas      4792 Apr 18 19:08 pilotlog.txt
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas    485225 Apr 18 19:08 log.44075483._070957.job.log.1
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas       357 Apr 18 19:08 output.list
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas       620 Apr 18 19:08 runtime_log
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas    870400 Apr 18 19:08 result.tar.gz
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 19:08 runtime_log.err
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas       658 Apr 18 19:08 pKTLDmzy2P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmOcfLDmTyGC4n.diag
[2025-04-18 19:08:40] -rw-r--r-- 1 boincer umatlas     21296 Apr 18 19:08 stderr.txt
[2025-04-18 19:08:40] HITS file was successfully produced:
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas 203895731 Apr 18 19:07 shared/HITS.pool.root.1
[2025-04-18 19:08:40]  *** Contents of shared directory: ***
[2025-04-18 19:08:40] total 421764
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas 226574815 Apr 18 17:42 ATLAS.root_0
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 17:42 start_atlas.sh
[2025-04-18 19:08:40] -rw-r--r-- 2 boincer umatlas    508887 Apr 18 17:42 input.tar.gz
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas 203895731 Apr 18 19:07 HITS.pool.root.1
[2025-04-18 19:08:40] -rw------- 1 boincer umatlas    870400 Apr 18 19:08 result.tar.gz
19:08:42 (31592): run_atlas exited; CPU time 48578.252462
19:08:42 (31592): called boinc_finish(0)

</stderr_txt>
]]>

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