Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 21:47:41 (43268): Detected: vboxwrapper 26206
2025-04-18 21:47:41 (43268): Detected: BOINC client v8.2.0
2025-04-18 21:47:41 (43268): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-18 21:47:42 (43268): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 21:47:42 (43268): Create VM. (boinc_126868232840f453, slot#8)
2025-04-18 21:47:43 (43268): Setting Memory Size for VM. (4096MB)
2025-04-18 21:47:43 (43268): Setting CPU Count for VM. (1)
2025-04-18 21:47:43 (43268): Setting Chipset Options for VM.
2025-04-18 21:47:43 (43268): Setting Graphics Controller Options for VM.
2025-04-18 21:47:44 (43268): Setting Boot Options for VM.
2025-04-18 21:47:44 (43268): Setting Network Configuration for NAT.
2025-04-18 21:47:44 (43268): Enabling VM Network Access.
2025-04-18 21:47:44 (43268): Disabling USB Support for VM.
2025-04-18 21:47:45 (43268): Disabling COM Port Support for VM.
2025-04-18 21:47:45 (43268): Disabling LPT Port Support for VM.
2025-04-18 21:47:45 (43268): Disabling Audio Support for VM.
2025-04-18 21:47:45 (43268): Disabling Clipboard Support for VM.
2025-04-18 21:47:46 (43268): Disabling Drag and Drop Support for VM.
2025-04-18 21:47:46 (43268): Adding storage controller(s) to VM.
2025-04-18 21:47:46 (43268): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 21:47:47 (43268): Adding VirtualBox Guest Additions to VM.
2025-04-18 21:47:47 (43268): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 21:47:47 (43268): forwarding host port 55927 to guest port 80
2025-04-18 21:47:47 (43268): Enabling remote desktop for VM.
2025-04-18 21:47:48 (43268): Required extension pack not installed, remote desktop not enabled.
2025-04-18 21:47:48 (43268): Enabling shared directory for VM.
2025-04-18 21:47:48 (43268): Starting VM using VBoxManage interface. (boinc_126868232840f453, slot#8)
2025-04-18 21:47:53 (43268): Successfully started VM. (PID = '16312')
2025-04-18 21:47:53 (43268): Reporting VM Process ID to BOINC.
2025-04-18 21:47:53 (43268): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-18 21:47:53 (43268): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 21:47:53 (43268): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 21:47:53 (43268): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 21:47:53 (43268): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 21:47:53 (43268): Detected: Web Application Enabled (http://localhost:55927)
2025-04-18 21:47:53 (43268): Preference change detected
2025-04-18 21:47:53 (43268): Setting CPU throttle for VM. (100%)
2025-04-18 21:47:53 (43268): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 21:47:55 (43268): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 21:47:55 (43268): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 21:47:57 (43268): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 21:47:57 (43268): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 21:47:57 (43268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 21:48:00 (43268): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 21:48:00 (43268): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 21:48:05 (43268): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000084 main     Log opened 2025-04-18T21:48:03.734700000Z
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000175 main     OS Product: Linux
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000199 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000218 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000236 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000236 main     Process ID: 1247
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000237 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 21:48:05 (43268): Guest Log: 00:00:00.000838 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 21:48:05 (43268): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 21:48:05 (43268): Guest Log: [INFO] Mounting shared directory
2025-04-18 21:48:05 (43268): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 21:48:08 (43268): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 21:48:08 (43268): Guest Log: [INFO] Detected branch: prod
2025-04-18 21:48:08 (43268): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 21:48:08 (43268): Guest Log: Copying input files
2025-04-18 21:48:09 (43268): Guest Log: Copied input files into RunAtlas.
2025-04-18 21:48:09 (43268): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-18 21:48:15 (43268): Guest Log: 00:00:10.011820 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 424 963 000ns (GuestNow=1 745 005 695 321 216 000 ns GuestLast=1 745 012 883 746 179 000 ns fSetTimeLastLoop=true )
2025-04-18 21:48:18 (43268): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 21:48:18 (43268): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 21:48:18 (43268): Guest Log: 2.6.3.0 1516 0 31568 145013 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-18 21:48:18 (43268): Guest Log: copied the webapp to /var/www
2025-04-18 21:48:18 (43268): Guest Log: core_number=1
2025-04-18 21:48:18 (43268): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 21:48:18 (43268): Guest Log:  *** Starting ATLAS job. (PandaID=6604035627 taskID=44075483) ***
2025-04-18 23:27:56 (43268): Status Report: Elapsed Time: '6000.000000'
2025-04-18 23:27:56 (43268): Status Report: CPU Time: '5765.734375'
2025-04-19 01:07:58 (43268): Status Report: Elapsed Time: '12000.000000'
2025-04-19 01:07:58 (43268): Status Report: CPU Time: '11739.375000'
2025-04-19 02:48:01 (43268): Status Report: Elapsed Time: '18000.000000'
2025-04-19 02:48:01 (43268): Status Report: CPU Time: '17715.593750'
2025-04-19 04:28:03 (43268): Status Report: Elapsed Time: '24000.000000'
2025-04-19 04:28:03 (43268): Status Report: CPU Time: '23690.218750'
2025-04-19 04:43:44 (43268): Guest Log:  *** Job finished ***
2025-04-19 04:43:44 (43268): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:25,347 | INFO     | [payload] validate_pre thread has finished
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:25,347 | INFO     | [job] validate thread has finished
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:28,116 | INFO     | [data] queue_monitor thread has finished
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:28,185 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415189894976)>', '<ExcThread(monitor, started 140414736647936)>']
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:28,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:28,885 | INFO     | [monitor] control thread has ended
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,190 | INFO     | all workflow threads have been joined
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,190 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,191 | INFO     | traces error code: 0
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,266 [wrapper] ==== pilot stdout END ====
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,268 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,270 [wrapper] pilotpid: 5768
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,272 [wrapper] Pilot exit status: 0
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,284 [wrapper] pandaids: 6604035627
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,295 [wrapper] cleanup supervisor_pilot 31723 5769
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,298 [wrapper] Test setup, not cleaning
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,299 [wrapper] apfmon messages muted
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,301 [wrapper] ==== wrapper stdout END ====
2025-04-19 04:43:44 (43268): Guest Log: 2025-04-19 02:43:33,303 [wrapper] ==== wrapper stderr END ====
2025-04-19 04:43:44 (43268): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 04:43:44 (43268): Guest Log:     "exeErrorCode": 0,
2025-04-19 04:43:44 (43268): Guest Log:     "exeErrorDiag": "",
2025-04-19 04:43:44 (43268): Guest Log:     "pilotErrorCode": 0,
2025-04-19 04:43:44 (43268): Guest Log:     "pilotErrorDiag": "",
2025-04-19 04:43:44 (43268): Guest Log:  *** Listing of results directory ***
2025-04-19 04:43:44 (43268): Guest Log: total 194140
2025-04-19 04:43:44 (43268): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 13:46 pilot3.tar.gz
2025-04-19 04:43:44 (43268): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 13:48 queuedata.json
2025-04-19 04:43:44 (43268): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 13:48 runpilot2-wrapper.sh
2025-04-19 04:43:44 (43268): Guest Log: -rwxr-xr-x. 1 atlas atlas      9352 Apr 18 19:48 init_data.xml
2025-04-19 04:43:44 (43268): Guest Log: -rwxr-xr-x. 1 atlas atlas    508891 Apr 18 19:48 input.tar.gz
2025-04-19 04:43:44 (43268): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 19:48 start_atlas.sh
2025-04-19 04:43:44 (43268): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 19:48 EVNT.44075481._001612.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 04:43:44 (43268): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 18 19:48 pandaJob.out
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas       460 Apr 18 19:48 setup.sh.local
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 18 19:48 agis_schedconf.cvmfs.json
2025-04-19 04:43:44 (43268): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 19:48 pilot3
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 02:42 pilot_heartbeat.json
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas 189529517 Apr 19 02:42 HITS.44075483._041165.pool.root.1
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas      1023 Apr 19 02:43 memory_monitor_summary.json
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 02:43 agis_ddmendpoints.agis.ALL.json
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas    402201 Apr 19 02:43 log.44075483._041165.job.log.tgz.1
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas      7674 Apr 19 02:43 heartbeat.json
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 19 02:43 pilotlog.txt
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas   2329536 Apr 19 02:43 log.44075483._041165.job.log.1
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 02:43 output.list
2025-04-19 04:43:44 (43268): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 02:43 runtime_log
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas   2754560 Apr 19 02:43 result.tar.gz
2025-04-19 04:43:44 (43268): Guest Log: -rw-r--r--. 1 atlas atlas     11174 Apr 19 02:43 runtime_log.err
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas       657 Apr 19 02:43 FLQLDmOJIP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmjf2KDm20OUGo.diag
2025-04-19 04:43:44 (43268): Guest Log: Looking for outputfile HITS.44075483._041165.pool.root.1
2025-04-19 04:43:44 (43268): Guest Log: HITS file was successfully produced
2025-04-19 04:43:44 (43268): Guest Log: -rw-------. 1 atlas atlas 189529517 Apr 19 02:42 /home/atlas/RunAtlas/HITS.44075483._041165.pool.root.1
2025-04-19 04:43:45 (43268): Guest Log: Successfully finished the ATLAS job!
2025-04-19 04:43:45 (43268): Guest Log: Copying the results back to the shared directory!
2025-04-19 04:43:45 (43268): Guest Log:  *** Contents of shared directory: ***
2025-04-19 04:43:45 (43268): Guest Log: total 404564
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root 221440180 Apr 18 19:47 ATLAS.root_0
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root 189529517 Apr 19  2025 HITS.pool.root.1
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root      9352 Apr 18 19:47 init_data.xml
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root    508891 Apr 18 19:47 input.tar.gz
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root   2754560 Apr 19  2025 result.tar.gz
2025-04-19 04:43:45 (43268): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 19:47 start_atlas.sh
2025-04-19 04:43:45 (43268): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 04:43:45 (43268): VM Completion File Detected.
2025-04-19 04:43:45 (43268): Powering off VM.
2025-04-19 04:43:45 (43268): Successfully stopped VM.
2025-04-19 04:43:45 (43268): Deregistering VM. (boinc_126868232840f453, slot#8)
2025-04-19 04:43:45 (43268): Removing network bandwidth throttle group from VM.
2025-04-19 04:43:45 (43268): Removing VM from VirtualBox.
04:43:51 (43268): called boinc_finish(0)

</stderr_txt>
]]>

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